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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = PG6

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Search Summary

This query matches 99 Structures.

Refinements

Structure Determination Methodology

experimental (99)

Scientific Name of Source Organism

	Homo sapiens (21)
	Thioalkalivibrio nitratireducens (8)
	Mus musculus (6)
	synthetic construct (6)
	Hepatitis C virus JFH-1 (5)
	Paracoccus denitrificans PD1222 (3)
	Escherichia coli K-12 (2)
	Methanocaldococcus jannaschii (2)
	Streptomyces avidinii (2)
	uncultured bacterium (2)

More...

Taxonomy

	Bacteria (43)
	Eukaryota (41)
	Riboviria (6)
	other sequences (6)
	Archaea (4)
	unclassified sequences (3)
	Duplodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (99)

Polymer Entity Type

	Protein (99)
	RNA (3)
	DNA (2)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (15)
	1.5 - 2.0 (33)
	2.0 - 2.5 (35)
	2.5 - 3.0 (13)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (15)
	2010 - 2014 (24)
	2015 - 2019 (30)
	2020 - 2024 (27)
	2025 - 2029 (2)

Enzyme Classification Name

	Oxidoreductases (19)
	Hydrolases (18)
	Transferases (16)
	Isomerases (3)
	Ligases (2)
	Lyases (2)
	Translocases (1)

Membrane Protein Annotation

	PDBTM (5)
	MemProtMD (3)
	OPM (2)
	mpstruc (3)

Symmetry Type

	Asymmetric (48)
	Cyclic (38)
	Dihedral (15)

SCOP Classification

	All beta proteins (14)
	Alpha and beta proteins (a+b) (9)
	Alpha and beta proteins (a/b) (10)
	Artifacts (6)
	All alpha proteins (3)
	Small proteins (3)
	Multi-domain proteins (alpha and beta) (2)

AllSelected

1 to 25 of 99 Structures

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1D1J \| pdb_00001d1j	Download File View File

CRYSTAL STRUCTURE OF HUMAN PROFILIN II

Nodelman, I.M., Bowman, G.D., Lindberg, U., Schutt, C.E.

(1999) J Mol Biology 294: 1271-1285

Released	2000-12-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	PROFILIN II (protein)
Unique Ligands	PG5, PG6, SO4

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1ZRT \| pdb_00001zrt	Download File View File

Rhodobacter capsulatus cytochrome bc1 complex with stigmatellin bound

Berry, E.A., Huang, L.S., Saechao, L.K., Pon, N.G., Valkova-Valchanov, M., Daldal, F.

(2004) Photosynth Res 81: 251-275

Released	2005-06-07
Method	X-RAY DIFFRACTION 3.51 Å
Organisms	Rhodobacter capsulatus
Macromolecule	Cytochrome b (protein) Cytochrome c1 (protein) Ubiquinol-cytochrome c reductase iron-sulfur subunit (protein)
Unique Ligands	FES, HEC, HEM, PG6, SMA, UNL

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2VLA \| pdb_00002vla	Download File View File

Crystal structure of restriction endonuclease BpuJI recognition domain in complex with cognate DNA

Sukackaite, R., Grazulis, S., Bochtler, M., Siksnys, V.

(2008) J Mol Biology 378: 1084

Released	2008-05-06
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Bacillus pumilus
Macromolecule	RESTRICTION ENDONUCLEASE R.BPUJI (protein) 5'-D(GPGPTPAPCPCPCPGPTPGP GPA)-3' (nucleic acid) 5'-D(TPCPCPAPCPGPGPGPTPAP CPC)-3' (nucleic acid)
Unique Ligands	NA, PG6

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2ZO5 \| pdb_00002zo5	Download File View File

Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in a complex with azide

Polyakov, K.M., Boyko, K.M., Slutsky, A., Tikhonova, T.V., Antipov, A.N., Zvyagilskaya, R.A., Popov, A.N., Lamzin, V.S., Bourenkov, G.P., Popov, V.O.

(2009) J Mol Biology 389: 846-862

Released	2009-05-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thioalkalivibrio nitratireducens
Macromolecule	Eight-heme nitrite reductase (protein)
Unique Ligands	AZI, CA, HEC, NA, PG4, PG6, TRS

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3CNX \| pdb_00003cnx	Download File View File

CRYSTAL STRUCTURE OF A PUTATIVE DEHYDRATASE FROM THE NTF2-LIKE FAMILY (SAV_4671) FROM STREPTOMYCES AVERMITILIS AT 2.10 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

To be published

Released	2008-04-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces avermitilis
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	CL, GOL, MG, PEG, PG6, PGE, UNL

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3D1I \| pdb_00003d1i	Download File View File

Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in a complex with nitrite

Polyakov, K.M., Boyko, K.M., Slutsky, A., Tikhonova, T.V., Antipov, A.N., Zvyagilskaya, R.A., Popov, A.N., Lamzin, V.S., Bourenkov, G.P., Popov, V.O.

(2009) J Mol Biology 389: 846-862

Released	2009-05-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thioalkalivibrio nitratireducens
Macromolecule	Eight-heme nitrite reductase (protein)
Unique Ligands	CA, HEC, NA, NO2, PG4, PG6

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3EEA \| pdb_00003eea	Download File View File

The crystal structure of the GAF domain/HD domain protein from Geobacter sulfurreducens

Zhang, R., Hatzos, C., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-11-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Geobacter sulfurreducens
Macromolecule	GAF domain/HD domain protein (protein)
Unique Ligands	PG6

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3EO4 \| pdb_00003eo4	Download File View File

The crystal structure of a domain from Methanocaldococcus jannaschii DSM 2661

Tan, K., Hatzos, C., Freeman, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-10-14
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Uncharacterized protein MJ1062 (protein)
Unique Ligands	EDO, MES, PG6

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3F29 \| pdb_00003f29	Download File View File

Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with sulfite

Trofimov, A.A., Polyakov, K.M., Boyko, K.M., Slutsky, A., Tikhonova, T.V., Antipov, A.N., Zvyagilskaya, R.A., Popov, A.N., Lamzin, V.S., Bourenkov, G.P., Popov, V.O.

To be published

Released	2008-12-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thioalkalivibrio nitratireducens
Macromolecule	Eight-heme nitrite reductase (protein)
Unique Ligands	CA, HEC, PG4, PG6, SO3

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3FO3 \| pdb_00003fo3	Download File View File

Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase reduced by sodium dithionite (sulfite complex)

Trofimov, A.A., Polyakov, K.M., Boyko, K.M., Slutsky, A., Tikhonova, T.V., Antipov, A.N., Zvyagilskaya, R.A., Popov, A.N., Lamzin, V.S., Bourenkov, G.P., Popov, V.O.

(2010) Acta Crystallogr D Biol Crystallogr 66: 1043-1047

Released	2009-12-29
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Thioalkalivibrio nitratireducens
Macromolecule	Eight-heme nitrite reductase (protein)
Unique Ligands	ACT, CA, HEC, NA, PG4, PG6, SO3, SO4, THJ, TRS

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3G7P \| pdb_00003g7p	Download File View File

Crystal structure of a nifx-associated protein of unknown function (afe_1514) from acidithiobacillus ferrooxidans atcc at 2.00 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2009-03-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Acidithiobacillus ferrooxidans ATCC 23270
Macromolecule	Nitrogen fixation protein (protein)
Unique Ligands	EDO, PG6, SO4

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3GP5 \| pdb_00003gp5	Download File View File

Crystal structure of phosphoglyceromutase from Burkholderia pseudomallei with 3-phosphoglyceric acid and vanadate

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 1044-1050

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Burkholderia pseudomallei
Macromolecule	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (protein)
Unique Ligands	3PG, PG4, PG6, VO4

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3H92 \| pdb_00003h92	Download File View File

The crystal structure of one domain of the protein with unknown function from Methanocaldococcus jannaschii

Zhang, R., Hatzos, C., Moy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-05-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Uncharacterized ATP-binding protein MJECL15 (protein)
Unique Ligands	PG6

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3HID \| pdb_00003hid	Download File View File

Crystal structure of adenylosuccinate synthetase from Yersinia pestis CO92

Zhang, R., Zhou, M., Peterson, S., Anderson, W., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2009-06-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Yersinia pestis CO92
Macromolecule	Adenylosuccinate synthetase (protein)
Unique Ligands	PG6

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3IMK \| pdb_00003imk	Download File View File

Crystal structure of Putative molybdenum carrier protein (YP_461806.1) from SYNTROPHUS ACIDITROPHICUS SB at 1.45 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2009-08-25
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Syntrophus aciditrophicus SB
Macromolecule	Putative molybdenum carrier protein (protein)
Unique Ligands	GOL, MES, PG4, PG6

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3JR7 \| pdb_00003jr7	Download File View File

The crystal structure of the protein of DegV family COG1307 with unknown function from Ruminococcus gnavus ATCC 29149

Zhang, R., Hatzos, C., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-10-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mediterraneibacter gnavus ATCC 29149
Macromolecule	uncharacterized egV family protein COG1307 (protein)
Unique Ligands	NA, PG6, PO4

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3KZQ \| pdb_00003kzq	Download File View File

The crystal structure of the protein with unknown function from Vibrio parahaemolyticus RIMD 2210633

Zhang, R., Weger, A., Shackelford, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2010-02-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Vibrio parahaemolyticus
Macromolecule	Putative uncharacterized protein VP2116 (protein)
Unique Ligands	GOL, MG, PG6

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3LG1 \| pdb_00003lg1	Download File View File

Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase reduced by sodium borohydride (in complex with sulfite)

Trofimov, A.A., Polyakov, K.M., Boyko, K.M., Filimonenkov, A.A., Dorovatovsky, P.V., Tikhonova, T.V., Popov, V.O.

(2012) Acta Crystallogr D Biol Crystallogr 68: 144-153

Released	2010-12-29
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Thioalkalivibrio nitratireducens
Macromolecule	Eight-heme nitrite reductase (protein)
Unique Ligands	CA, HEC, NA, PG4, PG6, SO3

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3MHY \| pdb_00003mhy	Download File View File

A New PII Protein Structure

Winkler, F.K., Truan, D., Li, X.D.

(2010) J Mol Biology 400: 531-539

Released	2010-06-09
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Azospirillum brasilense
Macromolecule	PII-like protein Pz (protein)
Unique Ligands	AKG, ATP, MES, MG, PG6

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3MMO \| pdb_00003mmo	Download File View File

Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with cyanide

Trofimov, A.A., Polyakov, K.M., Boyko, K.M., Tikhonova, T.V., Lamzin, V.S., Bourenkov, G.P., Popov, V.O.

(2010) Acta Crystallogr D Biol Crystallogr 66: 1043-1047

Released	2010-09-29
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Thioalkalivibrio nitratireducens
Macromolecule	Eight-heme nitrite reductase (protein)
Unique Ligands	CA, CYN, HEC, NA, PG4, PG6, TRS

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3ON2 \| pdb_00003on2	Download File View File

Structure of a protein with unknown function from Rhodococcus sp. RHA1

Fan, Y., Evdokimova, E., Egorova, O., Savchenko, A., Joachimiak, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2010-09-22
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Rhodococcus jostii RHA1
Macromolecule	Probable transcriptional regulator (protein)
Unique Ligands	PG6, SO4

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3OWM \| pdb_00003owm	Download File View File

Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in a complex with hydroxylamine

Trofimov, A.A., Polyakov, K.M., Boyko, K.M., Tikhonova, T.V., Lamzin, V.S., Bourenkov, G.P., Popov, V.O.

To be published

Released	2011-10-26
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Thioalkalivibrio nitratireducens
Macromolecule	Eight-heme nitrite reductase (protein)
Unique Ligands	CA, HEC, NA, NO2, PG4, PG6, TRS

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3PXS \| pdb_00003pxs	Download File View File

Crystal Structure of Diferrous MauG in Complex with Pre-Methylamine Dehydrogenase:

Yukl, E.T., Goblirsch, B.R.

(2011) Biochemistry 50: 2931-2938

Released	2011-03-23
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	ACT, CA, HEC, NA, PG4, PG6

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3PXT \| pdb_00003pxt	Download File View File

Crystal Structure of Ferrous CO Adduct of MauG in Complex with Pre-Methylamine Dehydrogenase

Yukl, E.T., Goblirsch, B.R., Wilmot, C.M.

(2011) Biochemistry 50: 2931-2938

Released	2011-03-23
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	ACT, CA, CMO, HEC, NA, PG6

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3PXW \| pdb_00003pxw	Download File View File

Crystal Structure of Ferrous NO Adduct of MauG in Complex with Pre-Methylamine Dehydrogenase

Yukl, E.T., Goblirsch, B.R., Wilmot, C.M.

(2011) Biochemistry 50: 2931-2938

Released	2011-03-23
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	ACT, CA, EDO, HEC, NA, NO, PG6, PGE

1 to 25 of 99 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1D1J | pdb_00001d1j

1ZRT | pdb_00001zrt

2VLA | pdb_00002vla

2ZO5 | pdb_00002zo5

3CNX | pdb_00003cnx

3D1I | pdb_00003d1i

3EEA | pdb_00003eea

3EO4 | pdb_00003eo4

3F29 | pdb_00003f29

3FO3 | pdb_00003fo3

3G7P | pdb_00003g7p

3GP5 | pdb_00003gp5

3H92 | pdb_00003h92

3HID | pdb_00003hid

3IMK | pdb_00003imk

3JR7 | pdb_00003jr7

3KZQ | pdb_00003kzq

3LG1 | pdb_00003lg1

3MHY | pdb_00003mhy

3MMO | pdb_00003mmo

3ON2 | pdb_00003on2

3OWM | pdb_00003owm

3PXS | pdb_00003pxs

3PXT | pdb_00003pxt

3PXW | pdb_00003pxw