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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = Y01

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Search Summary

This query matches 393 Structures.

Refinements

Structure Determination Methodology

experimental (393)

Scientific Name of Source Organism

	Homo sapiens (271)
	Mus musculus (64)
	Lama glama (29)
	Rattus norvegicus (18)
	Drosophila melanogaster (16)
	Arabidopsis thaliana (10)
	synthetic construct (10)
	Saccharomyces cerevisiae (9)
	Paramecium bursaria Chlorella virus CZ-2 (8)
	Meleagris gallopavo (7)

More...

Taxonomy

	Eukaryota (390)
	Bacteria (13)
	other sequences (10)
	Varidnaviria (8)
	Duplodnaviria (3)

Experimental Method

	ELECTRON MICROSCOPY (356)
	X-RAY DIFFRACTION (37)

Polymer Entity Type

Protein (393)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (19)
	2.5 - 3.0 (149)
	3.0 - 3.5 (159)
	3.5 - 4.0 (55)
	4.0 - 4.5 (4)
	> 4.5 (2)

Release Date

	2010 - 2014 (8)
	2015 - 2019 (58)
	2020 - 2024 (309)
	2025 - 2029 (18)

Enzyme Classification Name

	Translocases (39)
	Hydrolases (46)
	Transferases (6)
	Oxidoreductases (2)

Membrane Protein Annotation

	PDBTM (358)
	mpstruc (238)
	MemProtMD (236)
	OPM (202)

Symmetry Type

	Asymmetric (235)
	Cyclic (157)
	Dihedral (7)

SCOP Classification

	All beta proteins (10)
	Membrane and cell surface proteins and peptides (8)
	Artifacts (4)
	All alpha proteins (1)
	Small proteins (1)

AllSelected

1 to 25 of 393 Structures

Page 1 of 16

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2Y00 \| pdb_00002y00	Download File View File

TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONS AND BOUND PARTIAL AGONIST DOBUTAMINE (CRYSTAL DOB92)

Warne, A., Moukhametzianov, R., Baker, J.G., Nehme, R., Edwards, P.C., Leslie, A.G.W., Schertler, G.F.X., Tate, C.G.

(2011) Nature 469: 241

Released	2011-01-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Meleagris gallopavo
Macromolecule	BETA-1 ADRENERGIC RECEPTOR (protein)
Unique Ligands	2CV, NA, Y00, Y01

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2Y01 \| pdb_00002y01	Download File View File

TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONS AND BOUND PARTIAL AGONIST DOBUTAMINE (CRYSTAL DOB102)

Warne, A., Moukhametzianov, R., Baker, J.G., Nehme, R., Edwards, P.C., Leslie, A.G.W., Schertler, G.F.X., Tate, C.G.

(2011) Nature 469: 241

Released	2011-03-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Meleagris gallopavo
Macromolecule	BETA-1 ADRENERGIC RECEPTOR (protein)
Unique Ligands	2CV, Y00, Y01

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2Y02 \| pdb_00002y02	Download File View File

TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONS AND BOUND AGONIST CARMOTEROL

Warne, A., Moukhametzianov, R., Baker, J.G., Nehme, R., Edwards, P.C., Leslie, A.G.W., Schertler, G.F.X., Tate, C.G.

(2011) Nature 469: 241

Released	2011-01-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Meleagris gallopavo
Macromolecule	BETA-1 ADRENERGIC RECEPTOR (protein)
Unique Ligands	2CV, NA, WHJ, Y01

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2Y03 \| pdb_00002y03	Download File View File

TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONS AND BOUND AGONIST ISOPRENALINE

Warne, A., Moukhametzianov, R., Baker, J.G., Nehme, R., Edwards, P.C., Leslie, A.G.W., Schertler, G.F.X., Tate, C.G.

(2011) Nature 469: 241

Released	2011-01-12
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Meleagris gallopavo
Macromolecule	BETA-1 ADRENERGIC RECEPTOR (protein)
Unique Ligands	2CV, 5FW, NA, Y01

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2Y04 \| pdb_00002y04	Download File View File

TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONS AND BOUND PARTIAL AGONIST SALBUTAMOL

Warne, A., Moukhametzianov, R., Baker, J.G., Nehme, R., Edwards, P.C., Leslie, A.G.W., Schertler, G.F.X., Tate, C.G.

(2011) Nature 469: 241

Released	2011-01-12
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Meleagris gallopavo
Macromolecule	BETA-1 ADRENERGIC RECEPTOR (protein)
Unique Ligands	2CV, 68H, NA, Y01

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3ZPQ \| pdb_00003zpq	Download File View File

Thermostabilised turkey beta1 adrenergic receptor with 4-(piperazin-1- yl)-1H-indole bound (compound 19)

Christopher, J.A., Congreve, M., Dore, A.S., Marshall, F.H., Myszka, D.G., Brown, J., Koglin, M., Tehan, B., Errey, J.C., Tate, C.G., Warne, T.

(2013) J Med Chem 56: 3446

Released	2013-04-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Meleagris gallopavo
Macromolecule	BETA-1 ADRENERGIC RECEPTOR (protein)
Unique Ligands	2CV, NA, XF5, Y01

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3ZPR \| pdb_00003zpr	Download File View File

Thermostabilised turkey beta1 adrenergic receptor with 4-methyl-2-(piperazin-1-yl) quinoline bound

Christopher, J.A., Congreve, M., Dore, A.S., Marshall, F.H., Myszka, D.G., Brown, J., Koglin, M., Tehan, B., Errey, J.C., Tate, C.G., Warne, T.

(2013) J Med Chem 56: 3446

Released	2013-04-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Meleagris gallopavo
Macromolecule	BETA-1 ADRENERGIC RECEPTOR (protein)
Unique Ligands	2CV, 3WC, NA, Y01

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4AYW \| pdb_00004ayw	Download File View File

STRUCTURE OF THE HUMAN MITOCHONDRIAL ABC TRANSPORTER, ABCB10 (PLATE FORM)

Pike, A.C.W., Shintre, C.A., Li, Q., Kim, J., von Delft, F., Barr, A.J., Das, S., Chaikuad, A., Xia, X., Quigley, A., Dong, Y., Dong, L., Krojer, T., Vollmar, M., Muniz, J.R.C., Bray, J.E., Berridge, G., Chalk, R., Gileadi, O., Burgess-Brown, N., Shrestha, L., Goubin, S., Yang, J., Mahajan, P., Mukhopadhyay, S., Bullock, A.N., Arrowsmith, C.H., Weigelt, J., Bountra, C., Edwards, A.M., Carpenter, E.P.

(2013) Proc Natl Acad Sci U S A 110: 9710

Released	2012-07-11
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10 (protein)
Unique Ligands	ANP, LMT, Y01

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4XNV \| pdb_00004xnv	Download File View File

The human P2Y1 receptor in complex with BPTU

Zhang, D., Gao, Z., Jacobson, K., Han, G.W., Stevens, R., Zhao, Q., Wu, B., GPCR Network (GPCR)

(2015) Nature 520: 317-321

Released	2015-04-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Clostridium pasteurianum Homo sapiens
Macromolecule	P2Y purinoceptor 1, Rubredoxin, P2Y purinoceptor 1 (protein)
Unique Ligands	1PE, BUR, CLR, OLC, Y01, ZN

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4XP1 \| pdb_00004xp1	Download File View File

X-ray structure of Drosophila dopamine transporter bound to neurotransmitter dopamine

Gouaux, E., Penmatsa, A., Wang, K.

(2015) Nature 521: 322-327

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Drosophila melanogaster Mus musculus
Macromolecule	Antibody fragment light chain (protein) Dopamine transporter, isoform B (protein) antibody fragment heavy chain (protein)
Unique Ligands	CL, CLR, EDO, LDP, NA, NAG, P4G, Y01
Unique branched monosaccharides	GLC

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4XP4 \| pdb_00004xp4	Download File View File

X-ray structure of Drosophila dopamine transporter in complex with cocaine

Aravind, P., Wang, K., Gouaux, E.

(2015) Nature 521: 322-327

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Drosophila melanogaster Mus musculus
Macromolecule	ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-HEAVY CHAIN (protein) ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-LIGHT CHAIN (protein) Dopamine transporter (protein)
Unique Ligands	CL, CLR, COC, NA, P4G, Y01
Unique branched monosaccharides	GLC

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4XP6 \| pdb_00004xp6	Download File View File

X-ray structure of Drosophila dopamine transporter bound to psychostimulant methamphetamine

Aravind, P., Wang, K., Gouaux, E.

(2015) Nature 521: 322-327

Released	2015-05-13
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Drosophila melanogaster Mus musculus
Macromolecule	Antibody fragment heavy chain-protein, 9D5-heavy chain (protein) Antibody fragment light chain-protein, 9D5-light chain (protein) Transporter (protein)
Unique Ligands	B40, CL, CLR, NA, NAG, Y01
Unique branched monosaccharides	GLC

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4XP9 \| pdb_00004xp9	Download File View File

X-ray structure of Drosophila dopamine transporter bound to psychostimulant D-amphetamine

Aravind, P., Wang, K., Gouaux, E.

(2015) Nature 521: 322-327

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Drosophila melanogaster Mus musculus
Macromolecule	ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-HEAVY CHAIN (protein) ANTIBODY FRAGMENT LIGHT CHAIN-PROTEIN, 9D5-LIGHT CHAIN (protein) Transporter (protein)
Unique Ligands	1WE, CL, CLR, MPO, NA, NAG, P4G, Y01
Unique branched monosaccharides	GLC

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4XPT \| pdb_00004xpt	Download File View File

X-ray structure of Drosophila dopamine transporter with subsiteB mutations D121G/S426M and EL2 deletion of 162-201 in complex with substrate analogue 3,4 dichlorophen ethylamine

Aravind, P., Wang, K., Gouaux, E.

(2015) Nature 521: 322-327

Released	2015-05-06
Method	X-RAY DIFFRACTION 3.36 Å
Organisms	Drosophila melanogaster Mus musculus
Macromolecule	Dopamine transporter (protein) antibody fragment heavy chain (protein) antibody fragment light chain (protein)
Unique Ligands	42J, CL, CLR, NA, NAG, Y01
Unique branched monosaccharides	BGC, GLC

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5C65 \| pdb_00005c65	Download File View File

Structure of the human glucose transporter GLUT3 / SLC2A3

Pike, A.C.W., Quigley, A., Chu, A., Tessitore, A., Xia, X., Mukhopadhyay, S., Wang, D., Kupinska, K., Strain-Damerell, C., Chalk, R., Burgess-Brown, N.A., Edwards, A.M., Arrowsmith, C.H., Bountra, C., Carpenter, E.P., Structural Genomics Consortium (SGC)

To be published

Released	2015-07-08
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 2, facilitated glucose transporter member 3 (protein)
Unique Ligands	37X, Y01

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5CXV \| pdb_00005cxv	Download File View File

Structure of the human M1 muscarinic acetylcholine receptor bound to antagonist Tiotropium

Sun, B., Feng, D., Li, X., Kobilka, T.S., Kobilka, B.K.

(2016) Nature 531: 335-340

Released	2016-03-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	FLAG peptide (protein) Muscarinic acetylcholine receptor M1,Endolysin,Muscarinic acetylcholine receptor M1 (protein)
Unique Ligands	0HK, EDO, GOL, PGE, Y01

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5K7L \| pdb_00005k7l	Download File View File

Single particle cryo-EM structure of the voltage-gated K+ channel Eag1 bound to the channel inhibitor calmodulin

Whicher, J.R., MacKinnon, R.

(2016) Science 353: 664-669

Released	2016-08-17
Method	ELECTRON MICROSCOPY 3.78 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Calmodulin (protein) Potassium voltage-gated channel subfamily H member 1 (protein)
Unique Ligands	NAG, Y01

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5OCH \| pdb_00005och	Download File View File

The crystal structure of human ABCB8 in an outward-facing state

Faust, B., Pike, A.C.W., Shintre, C.A., Quiqley, A.M., Chu, A., Barr, A., Shrestha, L., Mukhopadhyay, S., Borkowska, O., Chalk, R., Burgess-Brown, N.A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Carpenter, E.P., Structural Genomics Consortium (SGC)

To be published

Released	2018-07-25
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens
Macromolecule	ATP-binding cassette sub-family B member 8, mitochondrial (protein)
Unique Ligands	ADP, MG, Y01

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5OSA \| pdb_00005osa	Download File View File

GLIC-GABAAR alpha1 chimera crystallized at pH4.6

Laverty, D.C., Gold, M.G., Smart, T.G.

(2017) Nat Struct Mol Biol 24: 977-985

Released	2017-10-11
Method	X-RAY DIFFRACTION 2.75000236232 Å
Organisms	Gloeobacter violaceus PCC 7421 Mus musculus
Macromolecule	Proton-gated ion channel,Gamma-aminobutyric acid receptor subunit alpha-1,Gamma-aminobutyric acid receptor subunit alpha-1 (protein)
Unique Ligands	ACT, CL, D12, Y01

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5OSC \| pdb_00005osc	Download File View File

GLIC-GABAAR alpha1 chimera crystallized in complex with pregnenolone sulfate at pH 4.5

Laverty, D.C., Gold, M.G., Smart, T.G.

(2017) Nat Struct Mol Biol 24: 977-985

Released	2017-10-11
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Gloeobacter violaceus PCC 7421 Mus musculus
Macromolecule	Proton-gated ion channel,Gamma-aminobutyric acid receptor subunit alpha-2,Gamma-aminobutyric acid receptor subunit alpha-1 (protein)
Unique Ligands	A8W, ACT, CL, Y01

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5TR1 \| pdb_00005tr1	Download File View File

Cryo-electron microscopy structure of a bovine CLC-K chloride channel, alternate (class 2) conformation

Park, E., MacKinnon, R.

(2017) Nature 541: 500-505

Released	2017-01-11
Method	ELECTRON MICROSCOPY 3.95 Å
Organisms	Bos taurus Mus musculus
Macromolecule	Chloride channel protein (protein) Monoclonal antibody, Fab fragment, heavy chain (protein) Monoclonal antibody, Fab fragment, light chain (protein)
Unique Ligands	Y01

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5UN1 \| pdb_00005un1	Download File View File

Crystal structure of GluN1/GluN2B delta-ATD NMDA receptor

Song, X., Gouaux, E.

(2018) Nature 556: 515-519

Released	2018-02-07
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Xenopus laevis
Macromolecule	Ionotropic glutamate receptor subunit NR2B (protein) N-methyl-D-aspartate receptor subunit NR1-3a (protein)
Unique Ligands	BMK, GLU, GLY, MG, NAG, TRS, Y01

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5W3S \| pdb_00005w3s	Download File View File

Cryo-electron microscopy structure of a TRPML3 ion channel

Hirschi, M., Herzik, M.A., Wie, J., Suo, Y., Borschel, W.F., Ren, D., Lander, G.C., Lee, S.Y.

(2017) Nature 550: 411-414

Released	2017-10-11
Method	ELECTRON MICROSCOPY 2.94 Å
Organisms	Callithrix jacchus
Macromolecule	Mucolipin-3 isoform 1 (protein)
Unique Ligands	3PE, NA, Y01

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5Z96 \| pdb_00005z96	Download File View File

Structure of the mouse TRPC4 ion channel

Duan, J., Li, Z., Li, J., Zhang, J.

(2018) Nat Commun 9: 3102-3102

Released	2018-04-18
Method	ELECTRON MICROSCOPY 3.28 Å
Organisms	Mus musculus
Macromolecule	Short transient receptor potential channel 4 (protein)
Unique Ligands	LPP, NA, Y01

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5ZX5 \| pdb_00005zx5	Download File View File

3.3 angstrom structure of mouse TRPM7 with EDTA

Zhang, J., Li, Z., Duan, J., Li, J., Hulse, R.E., Santa-Cruz, A., Abiria, S.A., Krapivinsky, G., Clapham, D.E.

(2018) Proc Natl Acad Sci U S A 115: E8201-E8210

Released	2018-10-17
Method	ELECTRON MICROSCOPY 3.28 Å
Organisms	Mus musculus
Macromolecule	Transient receptor potential cation channel subfamily M member 7 (protein)
Unique Ligands	Y01

1 to 25 of 393 Structures

Page 1 of 16

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2Y00 | pdb_00002y00

2Y01 | pdb_00002y01

2Y02 | pdb_00002y02

2Y03 | pdb_00002y03

2Y04 | pdb_00002y04

3ZPQ | pdb_00003zpq

3ZPR | pdb_00003zpr

4AYW | pdb_00004ayw

4XNV | pdb_00004xnv

4XP1 | pdb_00004xp1

4XP4 | pdb_00004xp4

4XP6 | pdb_00004xp6

4XP9 | pdb_00004xp9

4XPT | pdb_00004xpt

5C65 | pdb_00005c65

5CXV | pdb_00005cxv

5K7L | pdb_00005k7l

5OCH | pdb_00005och

5OSA | pdb_00005osa

5OSC | pdb_00005osc

5TR1 | pdb_00005tr1

5UN1 | pdb_00005un1

5W3S | pdb_00005w3s

5Z96 | pdb_00005z96

5ZX5 | pdb_00005zx5