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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Thermomonospora curvata DSM 43183 (11)
	Cyanidioschyzon sp. 5508 (5)
	Pseudomonas putida KT2440 (3)
	Escherichia coli BL21(DE3) (2)
	Acidithiobacillus ferrooxidans (1)
	Arabidopsis thaliana (1)
	Chlamydomonas reinhardtii (1)
	Corynebacterium glutamicum ATCC 13032 (1)
	Plasmodium falciparum (1)

Taxonomy

	Bacteria (18)
	Eukaryota (8)

Experimental Method

X-RAY DIFFRACTION (26)

Polymer Entity Type

Protein (26)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (11)
	2.0 - 2.5 (10)
	2.5 - 3.0 (4)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (22)
	2020 - 2024 (2)

Enzyme Classification Name

	Transferases (6)
	Oxidoreductases (3)
	Isomerases (1)
	Lyases (1)

Symmetry Type

	Asymmetric (17)
	Cyclic (13)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (3)
	All beta proteins (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 26 Structures

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4KW7 \| pdb_00004kw7	Download File View File

The structure of an As(III) S-adenosylmethionine methyltransferase with Phenylarsine oxide(PAO)

Packianathan, C., Marapakala, K., Ajees, A.A., Kandavelu, P., Rosen, B.P.

(2015) Acta Crystallogr D Biol Crystallogr 71: 505-515

Released	2014-05-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Cyanidioschyzon sp. 5508
Macromolecule	Arsenic methyltransferase (protein)
Unique Ligands	CA, PA0

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4RSR \| pdb_00004rsr	Download File View File

ArsM arsenic(III) S-adenosylmethionine methyltransferase with trivalent phenyl arsencial derivative-Roxarsone

Packianathan, C., Marapakala, K., Ajees, A.A., Kandavelu, P., Rosen, B.P.

(2015) Acta Crystallogr D Biol Crystallogr 71: 505-515

Released	2014-12-10
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Cyanidioschyzon sp. 5508
Macromolecule	Arsenic methyltransferase (protein)
Unique Ligands	CA, DTT, MG, NA, RXO

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4XAE \| pdb_00004xae	Download File View File

Structure of Feruloyl-CoA 6-hydroxylase (F6H) from Arabidopsis thaliana

Zhou, D., Kandavelu, P., Zhang, H., Wang, B.C., Rose, J., Yan, Y.

(2015) Sci Rep 5: 10355-10355

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.769 Å
Organisms	Arabidopsis thaliana
Macromolecule	Feruloyl CoA ortho-hydroxylase 1 (protein)
Unique Ligands	NA

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5C4P \| pdb_00005c4p	Download File View File

Crystal structure of ArsI C-As lyase solved by Ni-SAD phasing

Venkadesh, S., Yoshinaga, M., Kandavelu, P., Rosen, B.P.

To be published

Released	2016-07-13
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Thermomonospora curvata DSM 43183
Macromolecule	Glyoxalase/bleomycin resistance protein/dioxygenase (protein)
Unique Ligands	NI

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5C68 \| pdb_00005c68	Download File View File

Crystal structure of C-As lyase at 1.46 Angstroms resolution

Venkadesh, S., Yoshinaga, M., Kandavelu, P., Rosen, B.P.

To be published

Released	2016-07-13
Method	X-RAY DIFFRACTION 1.4618 Å
Organisms	Thermomonospora curvata DSM 43183
Macromolecule	Glyoxalase/bleomycin resistance protein/dioxygenase (protein)
Unique Ligands	NA, NI

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5C6X \| pdb_00005c6x	Download File View File

Crystal structure of C-As lyase with Co(II)

Venkadesh, S., Yoshinaga, M., Sankaran, B., Kandavelu, P., Rosen, B.P.

To be published

Released	2016-07-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermomonospora curvata DSM 43183
Macromolecule	Glyoxalase/bleomycin resistance protein/dioxygenase (protein)
Unique Ligands	CO, GOL, NA

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5CB9 \| pdb_00005cb9	Download File View File

Crystal structure of C-As lyase with mercaptoethonal

Venkadesh, S., Yoshinaga, M., Sankaran, B., Kandavelu, P., Rosen, B.P.

To be published

Released	2016-07-13
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Thermomonospora curvata DSM 43183
Macromolecule	Glyoxalase/bleomycin resistance protein/dioxygenase (protein)
Unique Ligands	BME, CL, NI

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5D4F \| pdb_00005d4f	Download File View File

Crystal structure of C-As lyase with Fe(III)

Venkadesh, S., Yoshinaga, M., Sankaran, B., Kandavelu, P., Rosen, B.P.

To be published

Released	2016-09-07
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Thermomonospora curvata DSM 43183
Macromolecule	Glyoxalase/bleomycin resistance protein/dioxygenase (protein)
Unique Ligands	CL, FE, NA

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5DFG \| pdb_00005dfg	Download File View File

Crystal structure of C-As lyase with mutations Y100H and V102F

Venkadesh, S., Yoshinaga, M., Kandavelu, P., Sankaran, B., Rosen, B.P.

To be published

Released	2016-09-21
Method	X-RAY DIFFRACTION 1.9711 Å
Organisms	Thermomonospora curvata DSM 43183
Macromolecule	Glyoxalase/bleomycin resistance protein/dioxygenase (protein)

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5DRH \| pdb_00005drh	Download File View File

Crystal structure of apo C-As lyase

Venkadesh, S., Yoshinaga, M., Sankaran, B., Kandavelu, P., Rosen, B.P.

To be published

Released	2016-09-21
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Thermomonospora curvata DSM 43183
Macromolecule	Glyoxalase/bleomycin resistance protein/dioxygenase (protein)
Unique Ligands	NA

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5EG5 \| pdb_00005eg5	Download File View File

As (III) S-adenosylmethyltransferase cysteine mutant C72A bound Phenylarsine oxide (PhAs(III) in the arsenic binding site

Packianathan, C., Marapakala, K., Kandavelu, P., Rosen, B.P.

To be published

Released	2016-11-02
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Cyanidioschyzon sp. 5508
Macromolecule	Arsenic methyltransferase (protein)
Unique Ligands	CA, PA0

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5EVJ \| pdb_00005evj	Download File View File

X-ray crystal structure of CrArsM, an arsenic (III) S-adenosylmethionine methyltransferase from Chlamydomonas reinhardtii

Packianathan, C., Kandavelu, P., Sankaran, B., Rosen, B.P.

To be published

Released	2016-11-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Arsenite methyltransferase (protein)
Unique Ligands	NA

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5HCW \| pdb_00005hcw	Download File View File

Crystal structure of C-As lyase with mutations Y100H and V102F (monoclinic form)

Venkadesh, S., Yoshinaga, M., Kandavelu, P., Sankaran, B., Rosen, B.P.

To be published

Released	2017-01-18
Method	X-RAY DIFFRACTION 2.785 Å
Organisms	Thermomonospora curvata DSM 43183
Macromolecule	Glyoxalase/bleomycin resistance protein/dioxygenase (protein)

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5JTF \| pdb_00005jtf	Download File View File

Crystal structure of ArsN N-acetyltransferase from Pseudomonas putida KT2440

Venkadesh, S., Dheeman, D.S., Kandavelu, P., Rosen, B.P.

(2019) Commun Biol 2: 131-131

Released	2017-05-17
Method	X-RAY DIFFRACTION 2.156 Å
Organisms	Pseudomonas putida KT2440
Macromolecule	Putative Phosphinothricin N-acetyltransferase (protein)
Unique Ligands	TRS

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5JX7 \| pdb_00005jx7	Download File View File

Cysteine mutant (C224A) structure of As (III) S-adenosyl methyltransferase

Packianathan, C., Marapakala, K., Ajees, A.A., Kandavelu, P., Sankaran, B., Rosen, B.P.

To be published

Released	2017-05-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Cyanidioschyzon sp. 5508
Macromolecule	Arsenic methyltransferase (protein)
Unique Ligands	CA

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5V0F \| pdb_00005v0f	Download File View File

Crystal structure of C-As lyase with mutation K105A and substrate Roxarsone

Venkadesh, S., Yoshinaga, M., Sankaran, B., Kandavelu, P., Rosen, B.P.

To be published

Released	2018-03-21
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Thermomonospora curvata DSM 43183
Macromolecule	Glyoxalase/bleomycin resistance protein/dioxygenase (protein)
Unique Ligands	CL, FE, RXO

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5WPH \| pdb_00005wph	Download File View File

Crystal structure of ArsN, N-acetyltransferase with substrate AST from Pseudomonas putida KT2440

Venkadesh, S., Dheeman, D.S., Yoshinaga, M., Kandavelu, P., Rosen, B.P.

(2019) Commun Biol 2: 131-131

Released	2018-10-10
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Pseudomonas putida KT2440
Macromolecule	Phosphinothricin N-acetyltransferase (protein)
Unique Ligands	BLJ, NA

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6B1B \| pdb_00006b1b	Download File View File

STRUCTURE OF 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE (HPAB), OXYGENASE COMPONENT FROM ESCHERICHIA COLI MUTANT XS6 (APO Enzyme)

Zhou, D., Kandavelu, P., Wang, B.C., Yan, Y., Rose, J.P.

(2019) Sci Rep 9: 7087-7087

Released	2019-05-22
Method	X-RAY DIFFRACTION 1.944 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit (protein)
Unique Ligands	TMO

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6CA8 \| pdb_00006ca8	Download File View File

Crystal structure of Plasmodium falciparum topoisomerase II DNA-binding, cleavage and re-ligation domain

Kumar, S., Kandavelu, P., Rathod, P.K.

To be published

Released	2019-02-06
Method	X-RAY DIFFRACTION 2.331 Å
Organisms	Plasmodium falciparum
Macromolecule	DNA topoisomerase 2 (protein)

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6CX6 \| pdb_00006cx6	Download File View File

The structure of an As(III) S-adenosylmethionine methyltransferase with As(III) and S-adenosyl-L-homocysteine (SAH)

Packianathan, C., Kandavelu, P., Rosen, B.P.

(2018) Biochemistry 57: 4083-4092

Released	2018-06-27
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Cyanidioschyzon sp. 5508
Macromolecule	Arsenic methyltransferase (protein)
Unique Ligands	ARS, SAH

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6EB0 \| pdb_00006eb0	Download File View File

STRUCTURE OF 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE (HPAB), OXYGENASE COMPONENT FROM ESCHERICHIA COLI

Zhou, D., Kandavelu, P., Zhang, H., Wang, B.C., Yan, Y., Rose, J.

(2019) Sci Rep 9: 7087-7087

Released	2019-05-22
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit (protein)
Unique Ligands	ACT

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6J05 \| pdb_00006j05	Download File View File

Structures of two ArsR As(III)-responsive repressors: implications for the mechanism of derepression

Prabaharan, C., Kandavelu, P., Packianathan, C., Rosen, P.B., Thiyagarajan, S.

(2019) J Struct Biol 207: 209-217

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Acidithiobacillus ferrooxidans
Macromolecule	Transcriptional regulator ArsR (protein)
Unique Ligands	ARS, NA

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6J0E \| pdb_00006j0e	Download File View File

Structures of two ArsR As(III)-responsive repressors: implications for the mechanism of derepression

Prabaharan, C., Kandavelu, P., Packianathan, C., Rosen, P.B., Thiyagarajan, S.

(2019) J Struct Biol 207: 209-217

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	Arsenic responsive repressor ArsR (protein)
Unique Ligands	ARS, MPD

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6M7G \| pdb_00006m7g	Download File View File

Crystal structure of ArsN, N-acetyltransferase with substrate phosphinothricin from Pseudomonas putida KT2440

Venkadesh, S., Dheeman, D.S., Yoshinaga, M., Kandavelu, P., Rosen, B.P.

(2019) Commun Biol 2: 131-131

Released	2019-04-24
Method	X-RAY DIFFRACTION 2.657 Å
Organisms	Pseudomonas putida KT2440
Macromolecule	Phosphinothricin N-acetyltransferase (protein)
Unique Ligands	PPQ

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6XA0 \| pdb_00006xa0	Download File View File

Crystal structure of C-As lyase with mutation K105R with Ni(II)

Venkadesh, S., Yoshinaga, M., Kandavelu, P., Sankaran, B., Rosen, B.P.

(2022) J Inorg Biochem 232: 111836-111836

Released	2021-06-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Thermomonospora curvata DSM 43183
Macromolecule	Glyoxalase/bleomycin resistance protein/dioxygenase (protein)
Unique Ligands	NI

1 to 25 of 26 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4KW7 | pdb_00004kw7

4RSR | pdb_00004rsr

4XAE | pdb_00004xae

5C4P | pdb_00005c4p

5C68 | pdb_00005c68

5C6X | pdb_00005c6x

5CB9 | pdb_00005cb9

5D4F | pdb_00005d4f

5DFG | pdb_00005dfg

5DRH | pdb_00005drh

5EG5 | pdb_00005eg5

5EVJ | pdb_00005evj

5HCW | pdb_00005hcw

5JTF | pdb_00005jtf

5JX7 | pdb_00005jx7

5V0F | pdb_00005v0f

5WPH | pdb_00005wph

6B1B | pdb_00006b1b

6CA8 | pdb_00006ca8

6CX6 | pdb_00006cx6

6EB0 | pdb_00006eb0

6J05 | pdb_00006j05

6J0E | pdb_00006j0e

6M7G | pdb_00006m7g

6XA0 | pdb_00006xa0