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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Expression Organism = "Saccharomyces cerevisiae"

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Search Summary

This query matches 1,497 Structures.

Refinements

Structure Determination Methodology

experimental (1,497)

Scientific Name of Source Organism

	Homo sapiens (453)
	Saccharomyces cerevisiae (323)
	Saccharomyces cerevisiae S288C (177)
	synthetic construct (84)
	Aspergillus flavus (67)
	Rattus norvegicus (55)
	Gallus gallus (45)
	Saccharomyces cerevisiae YJM789 (34)
	Arabidopsis thaliana (33)
	Oryctolagus cuniculus (30)

More...

Taxonomy

	Eukaryota (1,464)
	other sequences (84)
	Bacteria (37)
	Duplodnaviria (9)
	Varidnaviria (9)
	Riboviria (8)
	Archaea (4)
	unclassified sequences (4)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (933)
	ELECTRON MICROSCOPY (522)
	SOLUTION NMR (41)
	NEUTRON DIFFRACTION (2)
	POWDER DIFFRACTION (1)

Polymer Entity Type

	Protein (1,497)
	DNA (138)
	RNA (75)
	NA-hybrid (3)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (53)
	1.5 - 2.0 (347)
	2.0 - 2.5 (276)
	2.5 - 3.0 (240)
	3.0 - 3.5 (241)
	3.5 - 4.0 (150)
	4.0 - 4.5 (65)
	> 4.5 (83)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (185)
	2000 - 2004 (206)
	2005 - 2009 (118)
	2010 - 2014 (182)
	2015 - 2019 (308)
	2020 - 2024 (460)
	2025 - 2029 (36)

Enzyme Classification Name

	Hydrolases (525)
	Transferases (212)
	Oxidoreductases (208)
	Translocases (63)
	Isomerases (33)
	Lyases (21)
	Ligases (9)

Membrane Protein Annotation

	PDBTM (348)
	mpstruc (208)
	MemProtMD (244)
	OPM (179)

Symmetry Type

	Asymmetric (896)
	Cyclic (478)
	Dihedral (134)
	Tetrahedral (7)
	Helical (5)
	Icosahedral (5)

SCOP Classification

	Alpha and beta proteins (a+b) (368)
	All beta proteins (156)
	Alpha and beta proteins (a/b) (84)
	Artifacts (92)
	All alpha proteins (54)
	Small proteins (69)
	Multi-domain proteins (alpha and beta) (28)
	Membrane and cell surface proteins and peptides (5)
	Peptides (5)

AllSelected

1 to 25 of 1,497 Structures

Page 1 of 60

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1A1S \| pdb_00001a1s	Download File View File

ORNITHINE CARBAMOYLTRANSFERASE FROM PYROCOCCUS FURIOSUS

Villeret, V., Clantin, B., Tricot, C., Legrain, C., Roovers, M., Stalon, V., Glansdorff, N., Van Beeumen, J.

(1998) Proc Natl Acad Sci U S A 95: 2801-2806

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pyrococcus furiosus
Macromolecule	ORNITHINE CARBAMOYLTRANSFERASE (protein)

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1A2V \| pdb_00001a2v	Download File View File

COPPER AMINE OXIDASE FROM HANSENULA POLYMORPHA

Li, R., Mathews, F.S.

(1997) Acta Crystallogr D Biol Crystallogr 53: 364-370

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Ogataea angusta
Macromolecule	METHYLAMINE OXIDASE (protein)
Unique Ligands	CU

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1A2Y \| pdb_00001a2y	Download File View File

HEN EGG WHITE LYSOZYME, D18A MUTANT, IN COMPLEX WITH MOUSE MONOCLONAL ANTIBODY D1.3

Tsuchiya, D., Mariuzza, R.A.

(1998) Biochemistry 37: 7981-7991

Released	1998-04-29
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Gallus gallus Mus musculus
Macromolecule	IGG1-KAPPA D1.3 FV (HEAVY CHAIN) (protein) IGG1-KAPPA D1.3 FV (LIGHT CHAIN) (protein) LYSOZYME (protein)
Unique Ligands	PO4

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1A7F \| pdb_00001a7f	Download File View File

INSULIN MUTANT B16 GLU, B24 GLY, DES-B30, NMR, 20 STRUCTURES

Ludvigsen, S., Kaarsholm, N.C.

(1998) J Mol Biology 279: 1-7

Released	1998-07-15
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	INSULIN (protein)

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1A9W \| pdb_00001a9w	Download File View File

HUMAN EMBRYONIC GOWER II CARBONMONOXY HEMOGLOBIN

Sutherland-Smith, A.J., Baker, H.M., Hofmann, O.M., Brittain, T., Baker, E.N.

(1998) J Mol Biology 280: 475-484

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	HEMOGLOBIN (ALPHA CHAIN) (protein) HEMOGLOBIN (BETA CHAIN) (protein)
Unique Ligands	CMO, HEM

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1AMH \| pdb_00001amh	Download File View File

UNCOMPLEXED RAT TRYPSIN MUTANT WITH ASP 189 REPLACED WITH SER (D189S)

Szabo, E., Bocskei, Z.S., Naray-Szabo, G., Graf, L.

(1999) Eur J Biochem 263: 20-26

Released	1997-12-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus rattus
Macromolecule	ANIONIC TRYPSIN (protein)
Unique Ligands	CA

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1AN1 \| pdb_00001an1	Download File View File

LEECH-DERIVED TRYPTASE INHIBITOR/TRYPSIN COMPLEX

Priestle, J.P., Di Marco, S.

(1997) Structure 5: 1465-1474

Released	1998-07-01
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Hirudo medicinalis Sus scrofa
Macromolecule	TRYPSIN (protein) TRYPTASE INHIBITOR (protein)
Unique Ligands	CA

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1AY0 \| pdb_00001ay0	Download File View File

IDENTIFICATION OF CATALYTICALLY IMPORTANT RESIDUES IN YEAST TRANSKETOLASE

Wikner, C., Nilsson, U., Meshalkina, L., Udekwu, C., Lindqvist, Y., Schneider, G.

(1997) Biochemistry 36: 15643-15649

Released	1998-05-13
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	TRANSKETOLASE (protein)
Unique Ligands	CA, TPP

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1AZV \| pdb_00001azv	Download File View File

FAMILIAL ALS MUTANT G37R CUZNSOD (HUMAN)

Hart, P.J., Liu, H., Pellegrini, M., Nersissian, A.M., Gralla, E.B., Valentine, J.S., Eisenberg, D.

(1998) Protein Sci 7: 545-555

Released	1998-02-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	COPPER/ZINC SUPEROXIDE DISMUTASE (protein)
Unique Ligands	CU, ZN

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1B5U \| pdb_00001b5u	Download File View File

CONTRIBUTION OF HYDROGEN BONDS TO THE CONFORMATIONAL STABILITY OF HUMAN LYSOZYME: CALORIMETRY AND X-RAY ANALYSIS OF SIX SER->ALA MUTANT

Takano, K., Yamagata, Y., Kubota, M., Funahashi, J., Fujii, S., Yutani, K.

(1999) Biochemistry 38: 6623-6629

Released	1999-01-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

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1B5V \| pdb_00001b5v	Download File View File

CONTRIBUTION OF HYDROGEN BONDS TO THE CONFORMATIONAL STABILITY OF HUMAN LYSOZYME: CALORIMETRY AND X-RAY ANALYSIS OF SIX SER->ALA MUTANTS

Takano, K., Yamagata, Y., Kubota, M., Funahashi, J., Fujii, S., Yutani, K.

(1999) Biochemistry 38: 6623-6629

Released	1999-01-20
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	CL, NA

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1B5W \| pdb_00001b5w	Download File View File

CONTRIBUTION OF HYDROGEN BONDS TO THE CONFORMATIONAL STABILITY OF HUMAN LYSOZYME: CALORIMETRY AND X-RAY ANALYSIS OF SIX SER->ALA MUTANTS

Takano, K., Yamagata, Y., Kubota, M., Funahashi, J., Fujii, S., Yutani, K.

(1999) Biochemistry 38: 6623-6629

Released	1999-01-20
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	CL, NA

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1B5X \| pdb_00001b5x	Download File View File

Contribution of hydrogen bonds to the conformational stability of human lysozyme: calorimetry and x-ray analysis of six ser->ala mutants

Takano, K., Yamagata, Y., Kubota, M., Funahashi, J., Fujii, S., Yutani, K.

(1999) Biochemistry 38: 6623-6629

Released	1999-01-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

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1B5Y \| pdb_00001b5y	Download File View File

CONTRIBUTION OF HYDROGEN BONDS TO THE CONFORMATIONAL STABILITY OF HUMAN LYSOZYME: CALORIMETRY AND X-RAY ANALYSIS OF SIX SER->ALA MUTANTS

Takano, K., Yamagata, Y., Kubota, M., Funahashi, J., Fujii, S., Yutani, K.

(1999) Biochemistry 38: 6623-6629

Released	1999-01-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

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1B5Z \| pdb_00001b5z	Download File View File

CONTRIBUTION OF HYDROGEN BONDS TO THE CONFORMATIONAL STABILITY OF HUMAN LYSOZYME: CALORIMETRY AND X-RAY ANALYSIS OF SIX SER->ALA MUTANTS

Takano, K., Yamagata, Y., Kubota, M., Funahashi, J., Fujii, S., Yutani, K.

(1999) Biochemistry 38: 6623-6629

Released	1999-02-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME (protein)

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1B7L \| pdb_00001b7l	Download File View File

VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES

Takano, K., Ota, M., Ogasahara, K., Yamagata, Y., Nishikawa, K., Yutani, K.

(1999) Protein Eng 12: 663-672

Released	1999-01-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

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1B7M \| pdb_00001b7m	Download File View File

VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES

Takano, K., Ota, M., Ogasahara, K., Yamagata, Y., Nishikawa, K., Yutani, K.

(1999) Protein Eng 12: 663-672

Released	1999-01-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

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1B7N \| pdb_00001b7n	Download File View File

VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES

Takano, K., Ota, M., Ogasahara, K., Yamagata, Y., Nishikawa, K., Yutani, K.

(1999) Protein Eng 12: 663-672

Released	1999-01-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

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1B7O \| pdb_00001b7o	Download File View File

VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES

Takano, K., Ota, M., Ogasahara, K., Yamagata, Y., Nishikawa, K., Yutani, K.

(1999) Protein Eng 12: 663-672

Released	1999-02-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

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1B7P \| pdb_00001b7p	Download File View File

VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES

Takano, K., Ota, M., Ogasahara, K., Yamagata, Y., Nishikawa, K., Yutani, K.

(1999) Protein Eng 12: 663-672

Released	1999-01-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

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1B7Q \| pdb_00001b7q	Download File View File

VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES

Takano, K., Ota, M., Ogasahara, K., Yamagata, Y., Nishikawa, K., Yutani, K.

(1999) Protein Eng 12: 663-672

Released	1999-02-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

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1B7R \| pdb_00001b7r	Download File View File

VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES

Takano, K., Ota, M., Ogasahara, K., Yamagata, Y., Nishikawa, K., Yutani, K.

(1999) Protein Eng 12: 663-672

Released	1999-02-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

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1B7S \| pdb_00001b7s	Download File View File

VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES

Takano, K., Ota, M., Ogasahara, K., Yamagata, Y., Nishikawa, K., Yutani, K.

(1999) Protein Eng 12: 663-672

Released	1999-02-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME (protein)
Unique Ligands	NA

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1B7X \| pdb_00001b7x	Download File View File

STRUCTURE OF HUMAN ALPHA-THROMBIN Y225I MUTANT BOUND TO D-PHE-PRO-ARG-CHLOROMETHYLKETONE

Caccia, S., Futterer, K., Di Cera, E., Waksman, G.

(1999) Proc Natl Acad Sci U S A 96: 1852-1857

Released	1999-03-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (INHIBITOR) (protein) PROTEIN (THROMBIN HEAVY CHAIN) (protein) PROTEIN (THROMBIN LIGHT CHAIN) (protein)