RCSB PDB: Search

2FKW \| pdb_00002fkw	Download File View File

Structure of LH2 from Rps. acidophila crystallized in lipidic mesophases

Papiz, M.Z., Cherezov, V., Clogston, J., Caffrey, M.

(2006) J Mol Biology 357: 1605-1618

Released	2006-03-28
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Rhodoblastus acidophilus
Macromolecule	Light-harvesting protein B-800/850, alpha chain (protein) Light-harvesting protein B-800/850, beta chain (protein)
Unique Ligands	BCL, LDA, RG1

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2GUF \| pdb_00002guf	Download File View File

In meso crystal structure of the cobalamin transporter, BtuB

Caffrey, M., Cherezov, V., Yamashita, E., Cramer, W.A.

(2006) J Mol Biology 364: 716-734

Released	2006-12-05
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	Vitamin B12 transporter btuB (protein)
Unique Ligands	FMT, MPD, MPG

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2RH1 \| pdb_00002rh1	Download File View File

High resolution crystal structure of human B2-adrenergic G protein-coupled receptor.

Cherezov, V., Rosenbaum, D.M., Hanson, M.A., Rasmussen, S.G.F., Thian, F.S., Kobilka, T.S., Choi, H.J., Kuhn, P., Weis, W.I., Kobilka, B.K., Stevens, R.C., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)

(2007) Science 318: 1258-1265

Released	2007-10-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	beta-2-adrenergic receptor/T4-lysozyme chimera (protein)
Unique Ligands	12P, ACM, BU1, CAU, CLR, PLM, SO4
Unique branched monosaccharides	GLC

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2VDF \| pdb_00002vdf	Download File View File

Structure of the OpcA adhesion from Neisseria meningitidis determined by crystallization from the cubic mesophase

Cherezov, V., Liu, W., Derrick, J.P., Luan, B., Aksimentiev, A., Katritch, V., Caffrey, M.

(2008) Proteins 71: 24-34

Released	2007-10-23
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Neisseria meningitidis
Macromolecule	OUTER MEMBRANE PROTEIN (protein)
Unique Ligands	OCT, SO4

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3BYP \| pdb_00003byp	Download File View File

Mode of Action of a Putative Zinc Transporter CzrB

Cherezov, V., Srinivasan, V., Szebenyi, D.M.E., Caffrey, M.

(2008) Structure 16: 1378-1388

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermus thermophilus
Macromolecule	CzrB protein (protein)
Unique Ligands	SO4

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3BYR \| pdb_00003byr	Download File View File

Mode of Action of a Putative Zinc Transporter CzrB (Zn form)

Cherezov, V., Srinivasan, V., Szebenyi, D.M.E., Caffrey, M.

(2008) Structure 16: 1378-1388

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus
Macromolecule	CzrB protein (protein)
Unique Ligands	ZN

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3D4S \| pdb_00003d4s	Download File View File

Cholesterol bound form of human beta2 adrenergic receptor.

Hanson, M.A., Cherezov, V., Roth, C.B., Griffith, M.T., Jaakola, V.-P., Chien, E.Y.T., Velasquez, J., Kuhn, P., Stevens, R.C., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)

(2008) Structure 16: 897-905

Released	2008-06-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	Beta-2 adrenergic receptor/T4-lysozyme chimera (protein)
Unique Ligands	CLR, OLC, TIM

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3EML \| pdb_00003eml	Download File View File

The 2.6 A Crystal Structure of a Human A2A Adenosine Receptor bound to ZM241385.

Jaakola, V.-P., Griffith, M.T., Hanson, M.A., Cherezov, V., Chien, E.Y.T., Lane, J.R., Ijzerman, A.P., Stevens, R.C., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)

(2008) Science 322: 1211-1217

Released	2008-10-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	Human Adenosine A2A receptor/T4 lysozyme chimera (protein)
Unique Ligands	SO4, STE, ZMA

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3NY8 \| pdb_00003ny8	Download File View File

Crystal structure of the human beta2 adrenergic receptor in complex with the inverse agonist ICI 118,551

Wacker, D., Fenalti, G., Brown, M.A., Katritch, V., Abagyan, R., Cherezov, V., Stevens, R.C., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)

(2010) J Am Chem Soc 132: 11443-11445

Released	2010-08-11
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	Beta-2 adrenergic receptor, Lysozyme (protein)
Unique Ligands	CLR, JRZ, OLA, OLC, PGE

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3NY9 \| pdb_00003ny9	Download File View File

Crystal structure of the human beta2 adrenergic receptor in complex with a novel inverse agonist

Fenalti, G., Wacker, D., Brown, M.A., Katritch, V., Abagyan, R., Cherezov, V., Stevens, R.C., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)

(2010) J Am Chem Soc 132: 11443-11445

Released	2010-08-11
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	Beta-2 adrenergic receptor, Lysozyme (protein)
Unique Ligands	CLR, JSZ, OLC

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3NYA \| pdb_00003nya	Download File View File

Crystal structure of the human beta2 adrenergic receptor in complex with the neutral antagonist alprenolol

Brown, M.A., Wacker, D., Fenalti, G., Katritch, V., Abagyan, R., Cherezov, V., Stevens, R.C., GPCR Network (GPCR)

(2010) J Am Chem Soc 132: 11443-11445

Released	2010-08-11
Method	X-RAY DIFFRACTION 3.16 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	Beta-2 adrenergic receptor, Lysozyme (protein)
Unique Ligands	CLR, JTZ

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3ODU \| pdb_00003odu	Download File View File

The 2.5 A structure of the CXCR4 chemokine receptor in complex with small molecule antagonist IT1t

Wu, B., Mol, C.D., Han, G.W., Katritch, V., Chien, E.Y.T., Liu, W., Cherezov, V., Stevens, R.C., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)

(2010) Science 330: 1066-1071

Released	2010-10-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	C-X-C chemokine receptor type 4, Lysozyme Chimera (protein)
Unique Ligands	ITD, OLA, OLC

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3OE0 \| pdb_00003oe0	Download File View File

Crystal structure of the CXCR4 chemokine receptor in complex with a cyclic peptide antagonist CVX15

Wu, B., Mol, C.D., Han, G.W., Katritch, V., Chien, E.Y.T., Liu, W., Cherezov, V., Stevens, R.C., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)

(2010) Science 330: 1066-1071

Released	2010-10-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	C-X-C chemokine receptor type 4, Lysozyme Chimera (protein) Polyphemusin analog, CXC chemokine receptor antagonist (protein)

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3OE6 \| pdb_00003oe6	Download File View File

Crystal structure of the CXCR4 chemokine receptor in complex with a small molecule antagonist IT1t in I222 spacegroup

Wu, B., Mol, C.D., Han, G.W., Katritch, V., Chien, E.Y.T., Liu, W., Cherezov, V., Stevens, R.C., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)

(2010) Science 330: 1066-1071

Released	2010-10-27
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	C-X-C chemokine receptor type 4, Lysozyme Chimera (protein)
Unique Ligands	GOL, ITD, OLC

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3OE8 \| pdb_00003oe8	Download File View File

Crystal structure of the CXCR4 chemokine receptor in complex with a small molecule antagonist IT1t in P1 spacegroup

Wu, B., Mol, C.D., Han, G.W., Katritch, V., Chien, E.Y.T., Liu, W., Cherezov, V., Stevens, R.C., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)

(2010) Science 330: 1066-1071

Released	2010-10-27
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	C-X-C chemokine receptor type 4, Lysozyme Chimera (protein)
Unique Ligands	ITD

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3OE9 \| pdb_00003oe9	Download File View File

Crystal structure of the chemokine CXCR4 receptor in complex with a small molecule antagonist IT1t in P1 spacegroup

Wu, B., Mol, C.D., Han, G.W., Katritch, V., Chien, E.Y.T., Liu, W., Cherezov, V., Stevens, R.C., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)

(2010) Science 330: 1066-1071

Released	2010-10-27
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	C-X-C chemokine receptor type 4, Lysozyme Chimera (protein)
Unique Ligands	ITD

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3PBL \| pdb_00003pbl	Download File View File

Structure of the human dopamine D3 receptor in complex with eticlopride

Chien, E.Y.T., Liu, W., Han, G.W., Katritch, V., Zhao, Q., Cherezov, V., Stevens, R.C., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)

(2010) Science 330: 1091-1095

Released	2010-11-03
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	D(3) dopamine receptor, Lysozyme chimera (protein)
Unique Ligands	ETQ
Unique branched monosaccharides	GLC

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3QAK \| pdb_00003qak	Download File View File

Agonist bound structure of the human adenosine A2a receptor

Xu, F., Wu, H., Katritch, V., Han, G.W., Cherezov, V., Stevens, R., GPCR Network (GPCR)

(2011) Science 332: 322-327

Released	2011-03-09
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	Adenosine receptor A2a,lysozyme chimera (protein)
Unique Ligands	OLC, UKA

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3RZE \| pdb_00003rze	Download File View File

Structure of the human histamine H1 receptor in complex with doxepin

Shimamura, T., Han, G.W., Shiroishi, M., Weyand, S., Tsujimoto, H., Winter, G., Katritch, V., Abagyan, R., Cherezov, V., Liu, W., Kobayashi, T., Stevens, R., Iwata, S., GPCR Network (GPCR)

(2011) Nature 475: 65-70

Released	2011-06-15
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	Histamine H1 receptor, Lysozyme chimera (protein)
Unique Ligands	5EH, D7V, OLC, PO4

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3S8F \| pdb_00003s8f	Download File View File

1.8 A structure of ba3 cytochrome c oxidase from Thermus thermophilus in lipid environment

Tiefenbrunn, T., Liu, W., Chen, Y., Katritch, V., Stout, C.D., Fee, J.A., Cherezov, V.

(2011) PLoS One 6: e22348-e22348

Released	2011-08-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Cytochrome c oxidase polypeptide 2A (protein) Cytochrome c oxidase subunit 1 (protein) Cytochrome c oxidase subunit 2 (protein)
Unique Ligands	CU, CUA, HAS, HEM, OLC, PER

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3S8G \| pdb_00003s8g	Download File View File

1.8 A structure of ba3 cytochrome c oxidase mutant (A120F) from Thermus thermophilus in lipid environment

Tiefenbrunn, T., Liu, W., Chen, Y., Katritch, V., Stout, C.D., Fee, J.A., Cherezov, V.

(2011) PLoS One 6: e22348-e22348

Released	2011-08-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Cytochrome c oxidase polypeptide 2A (protein) Cytochrome c oxidase subunit 1 (protein) Cytochrome c oxidase subunit 2 (protein)
Unique Ligands	CU, CUA, HAS, HEM, OLC, PER

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4DJH \| pdb_00004djh	Download File View File

Structure of the human kappa opioid receptor in complex with JDTic

Wu, H., Wacker, D., Katritch, V., Mileni, M., Han, G.W., Vardy, E., Liu, W., Thompson, A.A., Huang, X.P., Carroll, F.I., Mascarella, S.W., Westkaemper, R.B., Mosier, P.D., Roth, B.L., Cherezov, V., Stevens, R.C., GPCR Network (GPCR)

(2012) Nature 485: 327-332

Released	2012-03-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	Kappa-type opioid receptor, Lysozyme (protein)
Unique Ligands	CIT, JDC, OLC, PEG

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4E1S \| pdb_00004e1s	Download File View File

X-ray crystal structure of the transmembrane beta-domain from intimin from EHEC strain O157:H7

Fairman, J.W., Dautin, N., Wojtowicz, D., Wei, L., Noinaj, N., Barnard, T.J., Udho, E., Finkelstein, A., Przytycka, T.M., Cherezov, V., Buchanan, S.K.

(2012) Structure 20: 1233-1243

Released	2012-06-13
Method	X-RAY DIFFRACTION 1.855 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Intimin (protein)
Unique Ligands	CL, OLB, OLC

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4E1T \| pdb_00004e1t	Download File View File

X-ray crystal structure of the transmembrane beta-domain from invasin from Yersinia pseudotuberculosis

Fairman, J.W., Dautin, N., Wojtowicz, D., Wei, L., Noinaj, N., Barnard, T.J., Udho, E., Finkelstein, A., Przytycka, T.M., Cherezov, V., Buchanan, S.K.

(2012) Structure 20: 1233-1243

Released	2012-06-13
Method	X-RAY DIFFRACTION 2.263 Å
Organisms	Yersinia pseudotuberculosis
Macromolecule	Invasin (protein)
Unique Ligands	OLB, OLC

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4EA3 \| pdb_00004ea3	Download File View File

Structure of the N/OFQ Opioid Receptor in Complex with a Peptide Mimetic

Thompson, A.A., Liu, W., Chun, E., Katritch, V., Wu, H., Vardy, E., Huang, X.P., Trapella, C., Guerrini, R., Calo, G., Roth, B.L., Cherezov, V., Stevens, R.C., GPCR Network (GPCR)

(2012) Nature 485: 395-399

Released	2012-04-25
Method	X-RAY DIFFRACTION 3.013 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Fusion protein of Nociceptin receptor and cytochrome b562 (protein)
Unique Ligands	0NN, OLA, OLB, OLC

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2FKW | pdb_00002fkw

2GUF | pdb_00002guf

2RH1 | pdb_00002rh1

2VDF | pdb_00002vdf

3BYP | pdb_00003byp

3BYR | pdb_00003byr

3D4S | pdb_00003d4s

3EML | pdb_00003eml

3NY8 | pdb_00003ny8

3NY9 | pdb_00003ny9

3NYA | pdb_00003nya

3ODU | pdb_00003odu

3OE0 | pdb_00003oe0

3OE6 | pdb_00003oe6

3OE8 | pdb_00003oe8

3OE9 | pdb_00003oe9

3PBL | pdb_00003pbl

3QAK | pdb_00003qak

3RZE | pdb_00003rze

3S8F | pdb_00003s8f

3S8G | pdb_00003s8g

4DJH | pdb_00004djh

4E1S | pdb_00004e1s

4E1T | pdb_00004e1t

4EA3 | pdb_00004ea3