RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Scientific Name of the Source Organism = "Aquifex aeolicus"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 351 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (351)

Scientific Name of Source Organism

Aquifex aeolicus (351)

Taxonomy

Bacteria (351)

Experimental Method

	X-RAY DIFFRACTION (321)
	ELECTRON MICROSCOPY (17)
	SOLUTION NMR (13)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (338)
	DNA (10)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (12)
	1.5 - 2.0 (82)
	2.0 - 2.5 (127)
	2.5 - 3.0 (65)
	3.0 - 3.5 (35)
	3.5 - 4.0 (8)
	4.0 - 4.5 (2)
	> 4.5 (7)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (63)
	2005 - 2009 (166)
	2010 - 2014 (65)
	2015 - 2019 (20)
	2020 - 2024 (34)

Enzyme Classification Name

	Transferases (96)
	Hydrolases (49)
	Ligases (36)
	Lyases (24)
	Oxidoreductases (15)
	Translocases (6)

Membrane Protein Annotation

	PDBTM (41)
	mpstruc (33)
	MemProtMD (30)
	OPM (14)

Symmetry Type

	Asymmetric (183)
	Cyclic (136)
	Dihedral (63)
	Icosahedral (10)
	Tetrahedral (4)
	Helical (3)

SCOP Classification

	Alpha and beta proteins (a/b) (93)
	Alpha and beta proteins (a+b) (71)
	All alpha proteins (32)
	Artifacts (38)
	All beta proteins (15)
	Membrane and cell surface proteins and peptides (24)
	Multi-domain proteins (alpha and beta) (2)

AllSelected

1 to 25 of 351 Polymer Entities

Page 1 of 15

Sort by

Explore in 3D

1C3P: Entity 1	Download File View File

CRYSTAL STRUCTURE OF AN HDAC HOMOLOG FROM AQUIFEX AEOLICUS

Finnin, M.S., Donigian, J.R., Pavletich, N.P.

(1999) Nature 401: 188-193

Released	1999-09-15
Method	X-RAY DIFFRACTION 1.8 Å
Chain ID	A
Organism	Aquifex aeolicus
Macromolecule	PROTEIN (HDLP (HISTONE DEACETYLASE-LIKE PROTEIN))

Explore in 3D

1C3R: Entity 1	Download File View File

CRYSTAL STRUCTURE OF AN HDAC HOMOLOG COMPLEXED WITH TRICHOSTATIN A

Finnin, M.S., Donigian, J.R., Pavletich, N.P.

(1999) Nature 401: 188-193

Released	1999-09-15
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B
Organism	Aquifex aeolicus
Macromolecule	HDLP (HISTONE DEACETYLASE-LIKE PROTEIN)

Explore in 3D

1C3S: Entity 1	Download File View File

CRYSTAL STRUCTURE OF AN HDAC HOMOLOG COMPLEXED WITH SAHA

Finnin, M.S., Donigian, J.R., Pavletich, N.P.

(1999) Nature 401: 188-193

Released	1999-09-15
Method	X-RAY DIFFRACTION 2.5 Å
Chain ID	A
Organism	Aquifex aeolicus
Macromolecule	HDLP (HISTONE DEACETYLASE-LIKE PROTEIN)

Explore in 3D

1F37: Entity 1	Download File View File

STRUCTURE OF A THIOREDOXIN-LIKE [2FE-2S] FERREDOXIN FROM AQUIFEX AEOLICUS

Yeh, A.P., Chatelet, C., Soltis, S.M., Kuhn, P., Meyer, J., Rees, D.C.

(2000) J Mol Biology 300: 587-595

Released	2000-07-26
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, B
Organism	Aquifex aeolicus
Macromolecule	FERREDOXIN [2FE-2S]

Explore in 3D

1FWN: Entity 1	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2001) J Biological Chem 276: 8393-8402

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.94 Å
Chain IDs	A, B
Organism	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE

Explore in 3D

1FWS: Entity 1	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP AND CADMIUM

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2009) Biochemistry 48: 3610-3630

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.9 Å
Chain IDs	A, B
Organism	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE

Explore in 3D

1FWT: Entity 1	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP, E4P AND CADMIUM

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2001) J Biological Chem 276: 8393-8402

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.9 Å
Chain IDs	A, B
Organism	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE

Explore in 3D

1FWW: Entity 1	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP, A5P AND CADMIUM

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2009) Biochemistry 48: 3610-3630

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, B
Organism	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE

Explore in 3D

1FX6: Entity 1	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2001) J Biological Chem 276: 8393-8402

Released	2001-04-21
Method	X-RAY DIFFRACTION 2.06 Å
Chain IDs	A, B
Organism	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE

Explore in 3D

1FXP: Entity 1	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH CADMIUM

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2001) J Biological Chem 276: 8393-8402

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B
Organism	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE

Explore in 3D

1FXQ: Entity 1	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP AND A5P

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2001) J Biological Chem 276: 8393-8402

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B
Organism	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE

Explore in 3D

1FY6: Entity 1	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH CADMIUM AND A5P

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2001) J Biological Chem 276: 8393-8402

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.89 Å
Chain IDs	A, B
Organism	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE

Explore in 3D

1GE9: Entity 1	Download File View File

SOLUTION STRUCTURE OF THE RIBOSOME RECYCLING FACTOR

Yoshida, T., Uchiyama, S., Nakano, H., Kashimori, H., Kijima, H., Ohshima, T., Saihara, Y., Ishino, T., Shimahara, T., Yoshida, T., Yokose, K., Ohkubo, T., Kaji, A., Kobayashi, Y.

(2001) Biochemistry 40: 2387-2396

Released	2001-05-16
Method	SOLUTION NMR
Chain ID	A
Organism	Aquifex aeolicus
Macromolecule	RIBOSOME RECYCLING FACTOR

Explore in 3D

1HQK: Entity 1	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF LUMAZINE SYNTHASE FROM AQUIFEX AEOLICUS

Zhang, X., Meining, W., Fischer, M., Bacher, A., Ladenstein, R.

(2001) J Mol Biology 306: 1099-1114

Released	2001-12-18
Method	X-RAY DIFFRACTION 1.6 Å
Chain IDs	A, C, D, E, B
Organism	Aquifex aeolicus
Macromolecule	6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE

Explore in 3D

1I4S: Entity 1	Download File View File

CRYSTAL STRUCTURE OF RNASE III ENDONUCLEASE DOMAIN FROM AQUIFEX AEOLICUS AT 2.15 ANGSTROM RESOLUTION

Blaszczyk, J., Ji, X.

(2001) Structure 9: 1225-1236

Released	2001-12-19
Method	X-RAY DIFFRACTION 2.15 Å
Chain IDs	A, B
Organism	Aquifex aeolicus
Macromolecule	RIBONUCLEASE III

Explore in 3D

1JCX: Entity 1	Download File View File

Aquifex aeolicus KDO8P synthase in complex with API and Cadmium

Wang, J., Duewel, H.S., Woodard, R.W., Gatti, D.L.

(2001) Biochemistry 40: 15676-15683

Released	2002-01-16
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	B, A
Organism	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE

Explore in 3D

1JCY: Entity 1	Download File View File

Aquifex aeolicus KDO8P synthase in complex with R5P, PEP and Cadmium

Wang, J., Duewel, H.S., Woodard, R.W., Gatti, D.L.

(2001) Biochemistry 40: 15676-15683

Released	2002-01-16
Method	X-RAY DIFFRACTION 1.9 Å
Chain IDs	A, B
Organism	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE

Explore in 3D

1JFZ: Entity 1	Download File View File

Crystal Structure of MN(II)-Complex of RNAse III Endonuclease Domain from Aquifex Aeolicus at 2.10 Angstrom Resolution

Blaszczyk, J., Ji, X.

(2001) Structure 9: 1225-1236

Released	2001-12-19
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B, C, D
Organism	Aquifex aeolicus
Macromolecule	RIBONUCLEASE III

Explore in 3D

1K8H: Entity 1	Download File View File

NMR Structure of Small Protein B (SmpB) from Aquifex aeolicus

Dong, G., Hoffman, D.W.

(2002) EMBO J 21: 1845-1854

Released	2002-03-20
Method	SOLUTION NMR
Chain ID	A
Organism	Aquifex aeolicus
Macromolecule	Small protein B

Explore in 3D

1L8Q: Entity 1	Download File View File

CRYSTAL STRUCTURE OF DNA REPLICATION INITIATION FACTOR

Erzberger, J.P., Pirruccello, M.M., Berger, J.M.

(2002) EMBO J 21: 4763-4773

Released	2002-09-25
Method	X-RAY DIFFRACTION 2.7 Å
Chain ID	A
Organism	Aquifex aeolicus
Macromolecule	Chromosomal replication initiator protein dnaA

Explore in 3D

1LFP: Entity 1	Download File View File

Crystal Structure of a Conserved Hypothetical Protein Aq1575 from Aquifex Aeolicus

Shin, D.H., Yokota, H., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2002) Proc Natl Acad Sci U S A 99: 7980-7985

Released	2002-06-19
Method	X-RAY DIFFRACTION 1.72 Å
Chain ID	A
Organism	Aquifex aeolicus
Macromolecule	Hypothetical protein AQ_1575

Explore in 3D

1LRN: Entity 1	Download File View File

Aquifex aeolicus KDO8P synthase H185G mutant in complex with Cadmium

Wang, J., Duewel, H.S., Stuckey, J.A., Woodard, R.W., Gatti, D.L.

(2002) J Mol Biology 324: 205-214

Released	2002-11-27
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	B, A
Organism	Aquifex aeolicus
Macromolecule	KDO-8-phosphate synthetase

Explore in 3D

1LRO: Entity 1	Download File View File

Aquifex aeolicus KDO8P synthase H185G mutant in complex with PEP and Cadmium

Wang, J., Duewel, H.S., Stuckey, J.A., Woodard, R.W., Gatti, D.L.

(2002) J Mol Biology 324: 205-214

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B
Organism	Aquifex aeolicus
Macromolecule	KDO-8-phosphate synthetase

Explore in 3D

1LRQ: Entity 1	Download File View File

Aquifex aeolicus KDO8P synthase H185G mutant in complex with PEP, A5P and Cadmium

Wang, J., Duewel, H.S., Stuckey, J.A., Woodard, R.W., Gatti, D.L.

(2002) J Mol Biology 324: 205-214

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B
Organism	Aquifex aeolicus
Macromolecule	KDO-8-phosphate synthetase

Explore in 3D

1M1G: Entity 1	Download File View File

Crystal Structure of Aquifex aeolicus N-utilization substance G (NusG), Space Group P2(1)

Steiner, T., Kaiser, J.T., Marinkovic, S., Huber, R., Wahl, M.C.

(2002) EMBO J 21: 4641-4653

Released	2003-02-04
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B, C, D
Organism	Aquifex aeolicus
Macromolecule	Transcription antitermination protein nusG

1 to 25 of 351 Polymer Entities

Page 1 of 15

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification