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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "GSU1360"

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Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Geobacter sulfurreducens (7)
	Escherichia coli 'BL21-Gold(DE3)pLysS AG (3)
	synthetic construct (3)
	Geobacter sulfurreducens PCA (1)

Taxonomy

	Bacteria (8)
	other sequences (3)

Experimental Method

ELECTRON MICROSCOPY (8)

Polymer Entity Type

	Protein (8)
	DNA (7)
	RNA (5)
	NA-hybrid (2)

Refinement Resolution (Å)

	2.5 - 3.0 (3)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)

Release Date

2020 - 2024 (8)

Symmetry Type

	Asymmetric (6)
	Cyclic (2)

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1 to 8 of 8 Structures

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8IN8	Download File View File

Cryo-EM structure of the target ssDNA-bound SIR2-APAZ/Ago-gRNA quaternary complex

Zhang, H., Li, Z., Yu, G.M., Li, X.Z., Wang, X.S.

(2023) Cell Res 33: 699-711

Released	2023-07-05
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Geobacter sulfurreducens PCA
Macromolecule	Piwi domain protein (protein) Sir2 superfamily protein (protein) DNA (5'-D(PAPAPCPGPAPCPGPTPCPTPAPAPGPAPAPAPCPCPAPTPTPAPA)-3') (nucleic acid) RNA (5'-R(PAPUPAPAPUPGPGPUPUPUPCPUPUPAPGPAPCPGPUPCPGPUPUP*U)-3') (nucleic acid)
Unique Ligands	MG

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8JKZ	Download File View File

Cryo-EM structure of the prokaryotic SPARSA system complex

Xu, X., Zhen, X., Long, F.

(2024) Nat Commun 15: 450-450

Released	2024-01-24
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Geobacter sulfurreducens
Macromolecule	Piwi domain protein (protein) Sir2 superfamily protein (protein)
Unique Ligands	NAD

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8JL0	Download File View File

Cryo-EM structure of the prokaryotic SPARSA system complex

Xu, X., Zhen, X., Long, F.

(2024) Nat Commun 15: 450-450

Released	2024-01-24
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Geobacter sulfurreducens synthetic construct
Macromolecule	Piwi domain protein (protein) Sir2 superfamily protein (protein) DNA (5'-D(PAPCPGPAPCPGPTPCPTPAPAPGPAPAPAPCPCPAPTPTPAPT)-3') (nucleic acid) RNA (5'-R(PAPUPAPAPUPGPGPUPUPUPCPUPUPAPGPAPCPGPUPCPGPU)-3') (nucleic acid)
Unique Ligands	NAD

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8K87	Download File View File

Dimer structure of procaryotic Ago

Gao, X., Sun, D., Cui, S., Wang, Y.

(2024) Cell Rep 43: 114391-114391

Released	2024-07-03
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Geobacter sulfurreducens synthetic construct
Macromolecule	Piwi domain protein (protein) Sir2 superfamily protein (protein) DNA (41-mer) (nucleic acid) RNA/DNA (21-mer) (hybrid)
Unique Ligands	MG

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8K88	Download File View File

Structure of procaryotic Ago

Gao, X., Sun, D., Cui, S., Wang, Y.

(2024) Cell Rep 43: 114391-114391

Released	2024-07-03
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Geobacter sulfurreducens synthetic construct
Macromolecule	Piwi domain protein (protein) Sir2 superfamily protein (protein) DNA (41-mer) (nucleic acid) DNA/RNA (21-mer) (hybrid)
Unique Ligands	MG

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8Y7Z	Download File View File

Cryo-EM structure of the monomeric SPARSA gRNA-ssDNA complex

Zhang, J.T., Cui, N., Wei, X.Y., Jia, N.

(2024) Nat Commun 15: 8610-8610

Released	2024-10-16
Method	ELECTRON MICROSCOPY 2.57 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG Geobacter sulfurreducens
Macromolecule	Piwi domain protein (protein) Sir2 superfamily protein (protein) DNA (25-mer) (nucleic acid) RNA (21-mer) (nucleic acid)
Unique Ligands	MG

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8Y80	Download File View File

Cryo-EM structure of the tetrameric SPARSA gRNA-ssDNA complex

Zhang, J.T., Cui, N., Wei, X.Y., Jia, N.

(2024) Nat Commun 15: 8610-8610

Released	2024-10-16
Method	ELECTRON MICROSCOPY 3.38 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG Geobacter sulfurreducens
Macromolecule	Piwi domain protein (protein) Sir2 superfamily protein (protein) DNA (25-mer) (nucleic acid) RNA (21-mer) (nucleic acid)
Unique Ligands	MG

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8Y82	Download File View File

Cryo-EM structure of the tetrameric SPARSA gRNA-ssDNA-NAD+ complex

Zhang, J.T., Cui, N., Wei, X.Y., Jia, N.

(2024) Nat Commun 15: 8610-8610

Released	2024-10-16
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Escherichia coli 'BL21-Gold(DE3)pLysS AG Geobacter sulfurreducens
Macromolecule	Piwi domain protein (protein) Sir2 superfamily protein (protein) DNA (25-mer) (nucleic acid) RNA (21-mer) (nucleic acid)
Unique Ligands	AMP, MG