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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "HT004"

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Search Summary

This query matches 30 Structures.

Refinements

Structure Determination Methodology

experimental (30)

Scientific Name of Source Organism

	Homo sapiens (30)
	synthetic construct (3)
	Rift Valley fever virus (1)

Taxonomy

	Eukaryota (30)
	other sequences (3)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (30)

Polymer Entity Type

Protein (30)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (9)
	2.0 - 2.5 (7)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (2)
	2015 - 2019 (9)
	2020 - 2024 (18)

Enzyme Classification Name

Transferases (5)

Membrane Protein Annotation

mpstruc (1)

Symmetry Type

	Asymmetric (25)
	Cyclic (5)

SCOP Classification

	Alpha and beta proteins (a+b) (13)
	Artifacts (3)

AllSelected

1 to 25 of 30 Structures

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Explore in 3D

3D32 \| pdb_00003d32	Download File View File

Complex of GABA(A) receptor-associated protein (GABARAP) with a synthetic peptide

Weiergraeber, O.H., Stangler, T., Willbold, D.

(2008) J Mol Biology 381: 1320-1331

Released	2008-08-05
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Gamma-aminobutyric acid receptor-associated protein (protein) K1 peptide (protein)
Unique Ligands	CL, NA

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3T5X \| pdb_00003t5x	Download File View File

PCID2:DSS1 Structure

Stewart, M., Ellisdon, A.M.

(2012) Nat Struct Mol Biol 19: 328-336

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.123 Å
Organisms	Homo sapiens
Macromolecule	26S proteasome complex subunit DSS1 (protein) PCI domain-containing protein 2 (protein)

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3WIM \| pdb_00003wim	Download File View File

GABARAP-LIR peptide complex

Lystad, A., Ichimura, Y., Takagi, K., Yang, Y., Pankiv, S., Mizushima, T., Komatsu, M., Simonsen, A.

(2014) To be published

Released	2014-03-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Gamma-aminobutyric acid receptor-associated protein (protein) WD repeat and FYVE domain-containing protein 3 (protein)

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6HB9 \| pdb_00006hb9	Download File View File

Crystal structure of the GABARAP in complex with the UBA5 LIR motif

Huber, J., Rogov, V., Akutsu, M.

(2020) Autophagy 16: 256-270

Released	2019-05-01
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Gamma-aminobutyric acid receptor-associated protein (protein)

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6HOG \| pdb_00006hog	Download File View File

Structure of VPS34 LIR motif bound to GABARAP

Mouilleron, S., Birgisdottir, A.B., Bhujbal, Z., Wirth, M., Sjottem, E., Evjen, G., Zhang, W., Lee, R., O'Reilly, N., Tooze, S., Lamark, T., Johansen, T.

(2019) Autophagy 15: 1333-1355

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3-kinase catalytic subunit type 3,Gamma-aminobutyric acid receptor-associated protein (protein)
Unique Ligands	EDO, GOL, SO4

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6HOH \| pdb_00006hoh	Download File View File

Structure of VPS34 LIR motif (S249E) bound to GABARAP

Mouilleron, S., Birgisdottir, A.B., Bhujbal, Z., Wirth, M., Sjottem, E., Evjen, G., Zhang, W., Lee, R., O'Reilly, N., Tooze, S., Lamark, T., Johansen, T.

(2019) Autophagy 15: 1333-1355

Released	2019-02-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3-kinase catalytic subunit type 3,Gamma-aminobutyric acid receptor-associated protein (protein)
Unique Ligands	PGE

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6HOJ \| pdb_00006hoj	Download File View File

Structure of Beclin1 LIR motif bound to GABARAP

Mouilleron, S., Birgisdottir, A.B., Bhujbal, Z., Wirth, M., Sjottem, E., Evjen, G., Zhang, W., Lee, R., O'Reilly, N., Tooze, S., Lamark, T., Johansen, T.

(2019) Autophagy 15: 1333-1355

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Homo sapiens
Macromolecule	Beclin-1,Gamma-aminobutyric acid receptor-associated protein (protein)
Unique Ligands	EDO, SO4

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6HOK \| pdb_00006hok	Download File View File

Structure of Beclin1 LIR (S96E) motif bound to GABARAP

Mouilleron, S., Birgisdottir, A.B., Bhujbal, Z., Wirth, M., Sjottem, E., Evjen, G., Zhang, W., Lee, R., O'Reilly, N., Tooze, S., Lamark, T., Johansen, T.

(2019) Autophagy 15: 1333-1355

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Homo sapiens
Macromolecule	Beclin-1,Gamma-aminobutyric acid receptor-associated protein (protein)
Unique Ligands	EDO

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6HYL \| pdb_00006hyl	Download File View File

Structure of PCM1 LIR motif bound to GABARAP

Mouilleron, S., Wirth, M., Zhang, W., O'Reilly, N., Tooze, S., Johansen, T., Razi, M., Nyoni, L., Joshi, D.

(2019) Nat Commun 10: 2055-2055

Released	2019-05-08
Method	X-RAY DIFFRACTION 1.559 Å
Organisms	Homo sapiens
Macromolecule	Pericentriolar material 1 protein,Gamma-aminobutyric acid receptor-associated protein (protein)

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6HYM \| pdb_00006hym	Download File View File

Structure of PCM1 LIR motif bound to GABARAP

Mouilleron, S., Wirth, M., Zhang, W., O'Reilly, N., Tooze, S., Johansen, T., Razi, M., Nyoni, L., Joshi, D.

(2019) Nat Commun 10: 2055-2055

Released	2019-05-08
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	Pericentriolar material 1 protein,Gamma-aminobutyric acid receptor-associated protein (protein)
Unique Ligands	EDO, GOL

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6HYN \| pdb_00006hyn	Download File View File

Structure of ATG13 LIR motif bound to GABARAP

Mouilleron, S., Wirth, M., Zhang, W., O'Reilly, N., Tooze, S., Johansen, T., Razi, M., Nyoni, L., Joshi, D.

(2019) Nat Commun 10: 2055-2055

Released	2019-05-08
Method	X-RAY DIFFRACTION 1.14 Å
Organisms	Homo sapiens
Macromolecule	Autophagy-related protein 13,Gamma-aminobutyric acid receptor-associated protein (protein)

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6HYO \| pdb_00006hyo	Download File View File

Structure of ULK1 LIR motif bound to GABARAP

Mouilleron, S., Wirth, M., Zhang, W., O'Reilly, N., Tooze, S., Johansen, T., Razi, M., Nyoni, L., Joshi, D.

(2019) Nat Commun 10: 2055-2055

Released	2019-05-08
Method	X-RAY DIFFRACTION 1.07 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase ULK1,Gamma-aminobutyric acid receptor-associated protein (protein)
Unique Ligands	EDO, GOL, PEG

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6YOP \| pdb_00006yop	Download File View File

Structure of SAMM50 LIR bound to GABARAP

Mouilleron, S., Wenxin, Z., Johansen, T., Tooze, S., Abudu, Y.P., Lamark, T.

To be published

Released	2021-04-28
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Homo sapiens
Macromolecule	Sorting and assembly machinery component 50 homolog,Gamma-aminobutyric acid receptor-associated protein (protein)

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7AA8 \| pdb_00007aa8	Download File View File

Structure of SCOC LIR bound to GABARAP

Lee, R., Mouilleron, S., Wirth, M., Zhang, W., O Reilly, N., Dhira, J., Tooze, S.

(2021) J Mol Biology 433: 166987-166987

Released	2021-06-16
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Chimera made of SCOC (6-23) + linker (GS) + GABARAP,Gamma-aminobutyric acid receptor-associated protein (protein)

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7BV4 \| pdb_00007bv4	Download File View File

Crystal structure of STX17 LIR region in complex with GABARAP

Li, Y., Pan, L.F.

(2020) Proc Natl Acad Sci U S A 117: 21391-21402

Released	2020-09-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Gamma-aminobutyric acid receptor-associated protein (protein) Syntaxin-17 (protein)
Unique Ligands	GOL, PEG

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7EA7 \| pdb_00007ea7	Download File View File

crystal structure of NAP1 LIR in complex with GABARAP

Fu, T., Pan, L.

(2021) Sci Adv 7:

Released	2021-12-22
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Homo sapiens
Macromolecule	Gamma-aminobutyric acid receptor-associated protein (protein) NAP1_LIR motif (protein)

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7LSW \| pdb_00007lsw	Download File View File

Structure of Full Beta-Hairpin LIR from FNIP2 Bound to GABARAP

Appleton, B.A.

(2021) Sci Adv 7: eabj2485-eabj2485

Released	2021-10-13
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Homo sapiens
Macromolecule	Folliculin-interacting protein 2,Gamma-aminobutyric acid receptor-associated protein (protein)
Unique Ligands	SO4

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7LT6 \| pdb_00007lt6	Download File View File

Structure of Partial Beta-Hairpin LIR from FNIP2 Bound to GABARAP

Appleton, B.A.

(2021) Sci Adv 7: eabj2485-eabj2485

Released	2021-10-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Folliculin-interacting protein 2,Gamma-aminobutyric acid receptor-associated protein (protein)

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7VEC \| pdb_00007vec	Download File View File

Crystal structure of GABARAP complexed with the TEX264 LIR phosphorylated at Ser271 and Ser272

Noda, N.N.

(2022) EMBO Rep 23: e54801-e54801

Released	2022-03-30
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Gamma-aminobutyric acid receptor-associated protein (protein) TEX264 phospho-LIR (protein)

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7VED \| pdb_00007ved	Download File View File

Crystal structure of GABARAP fused to TEX264 LIR with S272D mutation

Yamasaki, A., Noda, N.N.

(2022) EMBO Rep 23: e54801-e54801

Released	2022-03-30
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	Testis-expressed protein 264,Gamma-aminobutyric acid receptor-associated protein (protein)
Unique Ligands	SO4

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7YO9 \| pdb_00007yo9	Download File View File

Crystal structure of fusion protein of human TP53INP2 LIR and human GABARAP

Yamasaki, A., Noda, N.N.

(2023) Autophagy 19: 1424-1443

Released	2022-11-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Tumor protein p53-inducible nuclear protein 2,Gamma-aminobutyric acid receptor-associated protein (protein)
Unique Ligands	IPA, PO4

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7ZKR \| pdb_00007zkr	Download File View File

Human GABARAP in complex with stapled peptide Pen3-ortho

Ueffing, A., Brown, H., Willbold, D., Kritzer, J.A., Weiergraeber, O.H.

(2022) J Am Chem Soc 144: 14687-14697

Released	2022-08-31
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Gamma-aminobutyric acid receptor-associated protein (protein) Pen3-ortho (protein)
Unique Ligands	CL, OXE, PO4

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7ZL7 \| pdb_00007zl7	Download File View File

Human GABARAP in complex with stapled peptide Pen8-ortho

Ueffing, A., Brown, H., Willbold, D., Kritzer, J.A., Weiergraeber, O.H.

(2022) J Am Chem Soc 144: 14687-14697

Released	2022-08-31
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Gamma-aminobutyric acid receptor-associated protein (protein) Pen8-ortho (protein)
Unique Ligands	CL, NA, OXE

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8AFI \| pdb_00008afi	Download File View File

GABARAP in complex with LIR motif of HsATG3

Farnung, J., Benoit, R.M., Corn, J.E., Bode, J.W.

(2023) ACS Cent Sci 9: 1025-1034

Released	2023-05-10
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Homo sapiens
Macromolecule	Gamma-aminobutyric acid receptor-associated protein (protein) Ubiquitin-like-conjugating enzyme ATG3 (protein)
Unique Ligands	ACT, GOL

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8S1M \| pdb_00008s1m	Download File View File

Crystal structure of human GABARAP fused to EGFR (1076-1099)

Ueffing, A., Willbold, D., Weiergraeber, O.H.

(2024) FEBS Lett 598: 2656-2669

Released	2024-08-14
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor,Gamma-aminobutyric acid receptor-associated protein (protein)
Unique Ligands	CL, GOL

1 to 25 of 30 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3D32 | pdb_00003d32

3T5X | pdb_00003t5x

3WIM | pdb_00003wim

6HB9 | pdb_00006hb9

6HOG | pdb_00006hog

6HOH | pdb_00006hoh

6HOJ | pdb_00006hoj

6HOK | pdb_00006hok

6HYL | pdb_00006hyl

6HYM | pdb_00006hym

6HYN | pdb_00006hyn

6HYO | pdb_00006hyo

6YOP | pdb_00006yop

7AA8 | pdb_00007aa8

7BV4 | pdb_00007bv4

7EA7 | pdb_00007ea7

7LSW | pdb_00007lsw

7LT6 | pdb_00007lt6

7VEC | pdb_00007vec

7VED | pdb_00007ved

7YO9 | pdb_00007yo9

7ZKR | pdb_00007zkr

7ZL7 | pdb_00007zl7

8AFI | pdb_00008afi

8S1M | pdb_00008s1m