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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "JW3907"

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Search Summary

This query matches 57 Structures.

Refinements

Structure Determination Methodology

experimental (57)

Scientific Name of Source Organism

	Arabidopsis thaliana (14)
	Medicago sativa (8)
	Human adenovirus B3 (5)
	Influenza A virus (A/California/04/2009(H1N1)) (5)
	Human adenovirus 2 (4)
	Plantago major (4)
	Escherichia coli DH5[alpha] (3)
	Glycine max (3)
	Homo sapiens (3)
	Influenza A virus (3)

More...

Taxonomy

	Eukaryota (34)
	Varidnaviria (10)
	Riboviria (8)
	Bacteria (5)

Experimental Method

	X-RAY DIFFRACTION (56)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (57)
	DNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (10)
	2.0 - 2.5 (24)
	2.5 - 3.0 (10)
	3.0 - 3.5 (5)
	3.5 - 4.0 (3)
	> 4.5 (2)

Release Date

	2000 - 2004 (6)
	2005 - 2009 (10)
	2010 - 2014 (23)
	2015 - 2019 (12)
	2020 - 2024 (5)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (11)
	Ligases (11)
	Hydrolases (9)
	Oxidoreductases (6)
	Isomerases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (22)
	Cyclic (32)
	Icosahedral (6)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a/b) (13)
	All alpha proteins (8)
	All beta proteins (3)
	Artifacts (2)
	Alpha and beta proteins (a+b) (1)
	Small proteins (1)

AllSelected

1 to 25 of 57 Structures

Page 1 of 3

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1FP1 \| pdb_00001fp1	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF CHALCONE O-METHYLTRANSFERASE

Zubieta, C., Dixon, R.A., Noel, J.P.

(2001) Nat Struct Biol 8: 271-279

Released	2001-03-07
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Medicago sativa
Macromolecule	ISOLIQUIRITIGENIN 2'-O-METHYLTRANSFERASE (protein)
Unique Ligands	HCC, SAH

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1FP2 \| pdb_00001fp2	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF ISOFLAVONE O-METHYLTRANSFERASE

Zubieta, C., Dixon, R.A., Noel, J.P.

(2001) Nat Struct Biol 8: 271-279

Released	2001-03-07
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Medicago sativa
Macromolecule	ISOFLAVONE O-METHYLTRANSFERASE (protein)
Unique Ligands	HMO, SAH

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1FPQ \| pdb_00001fpq	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF SELENOMETHIONINE SUBSTITUTED CHALCONE O-METHYLTRANSFERASE

Zubieta, C., Dixon, R.A., Noel, J.P.

(2001) Nat Struct Biol 8: 271-279

Released	2001-03-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Medicago sativa
Macromolecule	ISOLIQUIRITIGENIN 2'-O-METHYLTRANSFERASE (protein)
Unique Ligands	SAM

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1KYW \| pdb_00001kyw	Download File View File

Crystal Structure Analysis of Caffeic Acid/5-hydroxyferulic acid 3/5-O-methyltransferase in complex with 5-hydroxyconiferaldehyde

Zubieta, C., Kota, P., Ferrer, J.-L., Dixon, R.A., Noel, J.P.

(2002) Plant Cell 14: 1265-1277

Released	2002-08-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Medicago sativa
Macromolecule	Caffeic acid 3-O-methyltransferase (protein)
Unique Ligands	HFL, SAH

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1KYZ \| pdb_00001kyz	Download File View File

Crystal Structure Analysis of Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase Ferulic Acid Complex

Zubieta, C., Kota, P., Ferrer, J.-L., Dixon, R.A., Noel, J.P.

(2002) Plant Cell 14: 1265-1277

Released	2002-08-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Medicago sativa
Macromolecule	Caffeic acid 3-O-methyltransferase (protein)
Unique Ligands	FER, SAH

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1M6E \| pdb_00001m6e	Download File View File

CRYSTAL STRUCTURE OF SALICYLIC ACID CARBOXYL METHYLTRANSFERASE (SAMT)

Zubieta, C., Ross, J.R., Koscheski, P., Yang, Y., Pichersky, E., Noel, J.P.

(2003) Plant Cell 15: 1704-1716

Released	2003-09-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Clarkia breweri
Macromolecule	S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase (protein)
Unique Ligands	LU, SAH, SAL

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1SUI \| pdb_00001sui	Download File View File

Alfalfa caffeoyl coenzyme A 3-O-methyltransferase

Ferrer, J.-L., Zubieta, C., Dixon, R.A., Noel, J.P.

(2005) Plant Physiol 137: 1009-1017

Released	2005-03-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Medicago sativa
Macromolecule	Caffeoyl-CoA O-methyltransferase (protein)
Unique Ligands	CA, FRE, SAH

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1SUS \| pdb_00001sus	Download File View File

Crystal structure of alfalfa feruoyl coenzyme A 3-O-methyltransferase

Ferrer, J.-L., Zubieta, C., Dixon, R.A., Noel, J.P.

(2005) Plant Physiol 137: 1009-1017

Released	2005-03-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Medicago sativa
Macromolecule	Caffeoyl-CoA O-methyltransferase (protein)
Unique Ligands	CA, SAH, SPF

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1X9P \| pdb_00001x9p	Download File View File

The crystal structure of human adenovirus 2 penton base

Zubieta, C., Schoehn, G., Chroboczek, J., Cusack, S.

(2005) Mol Cell 17: 121-135

Released	2005-01-18
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Human adenovirus 2
Macromolecule	Penton protein (protein)
Unique Ligands	C15, SO4

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1X9T \| pdb_00001x9t	Download File View File

The crystal structure of human adenovirus 2 penton base in complex with an ad2 N-terminal fibre peptide

Zubieta, C., Schoehn, G., Chroboczek, J., Cusack, S.

(2005) Mol Cell 17: 121-135

Released	2005-01-18
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Human adenovirus 2 Human adenovirus C serotype 2
Macromolecule	N-terminal peptide of Fiber protein (protein) Penton protein (protein)
Unique Ligands	C15

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2C6S \| pdb_00002c6s	Download File View File

human adenovirus penton base 2 12 chimera

Zubieta, C., Blanchoin, L., Cusack, S.

(2006) FEBS J 273: 4336

Released	2006-09-06
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Human adenovirus 2
Macromolecule	ADENOVIRUS 2,12 PENTON BASE CHIMERA (protein)

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2PJY \| pdb_00002pjy	Download File View File

Structural basis for cooperative assembly of the TGF-beta signaling complex

Groppe, J., Zubieta, C.

(2008) Mol Cell 29: 157-168

Released	2008-02-05
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	TGF-beta receptor type-1 (protein) TGF-beta receptor type-2 (protein) Transforming growth factor beta-3 (protein)

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2VDJ \| pdb_00002vdj	Download File View File

Crystal Structure of Homoserine O-acetyltransferase (metA) from Bacillus Cereus with Homoserine

Zubieta, C., Arkus, K.A.J., Cahoon, R.E., Jez, J.M.

(2008) J Biological Chem 283: 7561

Released	2008-01-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus cereus
Macromolecule	HOMOSERINE O-SUCCINYLTRANSFERASE (protein)
Unique Ligands	HSE, SO4

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2XHY \| pdb_00002xhy	Download File View File

Crystal Structure of E.coli BglA

Totir, M., Zubieta, C., Echols, N., May, A.P., Gee, C.L., nanao, M., alber, T.

(2012) PLoS One 7: 32498

Released	2011-07-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	6-PHOSPHO-BETA-GLUCOSIDASE BGLA (protein)
Unique Ligands	BR, SO4

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3KAJ \| pdb_00003kaj	Download File View File

Apoenzyme structure of homoglutathione synthetase from Glycine max in open conformation

Galant, A., Arkus, K.A.J., Zubieta, C., Cahoon, R.E., Jez, J.M.

(2009) Plant Cell 21: 3450-3458

Released	2009-12-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Glycine max
Macromolecule	Homoglutathione synthetase (protein)

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3KAK \| pdb_00003kak	Download File View File

Structure of homoglutathione synthetase from Glycine max in open conformation with gamma-glutamyl-cysteine bound.

Galant, A., Arkus, K.A.J., Zubieta, C., Cahoon, R.E., Jez, J.M.

(2009) Plant Cell 21: 3450-3458

Released	2009-12-22
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Glycine max
Macromolecule	Homoglutathione synthetase (protein)
Unique Ligands	3GC

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3KAL \| pdb_00003kal	Download File View File

Structure of homoglutathione synthetase from Glycine max in closed conformation with homoglutathione, ADP, a sulfate ion, and three magnesium ions bound

Galant, A., Arkus, K.A.J., Zubieta, C., Cahoon, R.E., Jez, J.M.

(2009) Plant Cell 21: 3450-3458

Released	2009-12-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Glycine max
Macromolecule	homoglutathione synthetase (protein)
Unique Ligands	ADP, HGS, MG, SO4

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3N6Q \| pdb_00003n6q	Download File View File

Crystal structure of YghZ from E. coli

Zubieta, C., Totir, M., Echols, N., May, A., Alber, T.

(2012) PLoS One 7: e32498-e32498

Released	2011-06-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli DH5[alpha]
Macromolecule	YghZ aldo-keto reductase (protein)
Unique Ligands	MG

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3NBU \| pdb_00003nbu	Download File View File

Crystal structure of pGI glucosephosphate isomerase

Alber, T., Zubieta, C., Totir, M., May, A., Echols, N.

(2012) PLoS One 7: e32498-e32498

Released	2011-06-29
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli DH5[alpha]
Macromolecule	Glucose-6-phosphate isomerase (protein)
Unique Ligands	CL

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3SBO \| pdb_00003sbo	Download File View File

Structure of E.coli GDH from native source

Gee, C.L., Zubieta, C., Echols, N., Totir, M.

(2012) PLoS One 7: e32498-e32498

Released	2012-03-21
Method	X-RAY DIFFRACTION 3.204 Å
Organisms	Escherichia coli DH5[alpha]
Macromolecule	NADP-specific glutamate dehydrogenase (protein)
Unique Ligands	CL

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4AQQ \| pdb_00004aqq	Download File View File

Dodecahedron formed of penton base protein from adenovirus Ad3

Burmeister, W.P., Szolajska, E., Zochowska, M., Nerlo, B., Andreev, I., Schoehn, G., Andrieu, J.-P., Fender, P., Naskalska, A., Zubieta, C., Cusack, S., Chroboczek, J.

(2012) PLoS One 7: 46075

Released	2012-10-24
Method	X-RAY DIFFRACTION 4.75 Å
Organisms	Human adenovirus B3
Macromolecule	L2 PROTEIN III (PENTON BASE) (protein)
Unique Ligands	CA

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4AR2 \| pdb_00004ar2	Download File View File

Dodecahedron formed of penton base protein from adenovirus Ad3

Burmeister, W.P., Szolajska, E., Zochowska, M., Nerlo, B., Andreev, I., Schoehn, G., Andrieu, J.-P., Fender, P., Naskalska, A., Zubieta, C., Cusack, S., Chroboczek, J.

(2012) PLoS One 7: 46075

Released	2012-10-24
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Human adenovirus B3
Macromolecule	FIBER PROTEIN (protein) L2 PROTEIN III (PENTON BASE) (protein)
Unique Ligands	CA