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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "POLI"

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Search Summary

This query matches 55 Structures.

Refinements

Structure Determination Methodology

experimental (55)

Scientific Name of Source Organism

	Homo sapiens (44)
	synthetic construct (21)
	Pyrococcus abyssi GE5 (9)
	Mus musculus (2)
	Streptococcus sp. 'group G (2)
	Thermus aquaticus (2)
	unidentified (2)

Taxonomy

	Eukaryota (44)
	other sequences (21)
	Archaea (9)
	Bacteria (4)
	unclassified sequences (2)

Experimental Method

	X-RAY DIFFRACTION (50)
	SOLUTION NMR (5)

Polymer Entity Type

	Protein (55)
	DNA (50)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (21)
	2.5 - 3.0 (20)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (17)
	2010 - 2014 (29)
	2015 - 2019 (8)

Enzyme Classification Name

Transferases (55)

Symmetry Type

	Asymmetric (47)
	Cyclic (8)

SCOP Classification

	Alpha and beta proteins (a+b) (22)
	Multi-domain proteins (alpha and beta) (20)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 55 Structures

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1T3N \| pdb_00001t3n	Download File View File

Structure of the catalytic core of DNA polymerase Iota in complex with DNA and dTTP

Nair, D.T., Johnson, R.E., Prakash, S., Prakash, L., Aggarwal, A.K.

(2004) Nature 430: 377-380

Released	2004-07-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	polymerase (DNA directed) iota (protein) Primer DNA strand (nucleic acid) Template DNA strand (nucleic acid)
Unique Ligands	MG, TTP

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1ZET \| pdb_00001zet	Download File View File

X-ray data do not support hoogsteen base-pairing during replication by human polymerase iota

Wang, J.

(2005) Nature 437: E6-7; discussion E7

Released	2005-07-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Polymerase (DNA directed) iota (protein) 5'-D(GPGPGPGPGPAPAPGPGPAPCPCP(DOC))-3' (nucleic acid) 5'-D(PAPGPGPGP(BRU)PCPCP(BRU)P(BRU)PCPCPCPCP*C)-3' (nucleic acid)
Unique Ligands	MG, TTP

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2ALZ \| pdb_00002alz	Download File View File

Ternary Complex of hPoli with DNA and dCTP

Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.

(2005) Structure 13: 1569-1577

Released	2005-10-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) 5'-D(APGPGPAPCPCP(DOC))-3' (nucleic acid) 5'-D(TPGPGPGPGPTPCPCPT)-3' (nucleic acid)
Unique Ligands	DCP, MG

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2DPJ \| pdb_00002dpj	Download File View File

structure of hPoli with DNA and dTTP

Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.

(2006) Nat Struct Mol Biol 13: 619-625

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) 5'-D(APGPGPAPCPCP(DOC))-3' (nucleic acid) 5'-D(TP(EDA)PGPGPGPTPCPCPT)-3' (nucleic acid)
Unique Ligands	MG, TTP

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2FLL \| pdb_00002fll	Download File View File

Ternary complex of human DNA polymerase iota with DNA and dTTP

Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.

(2006) Structure 14: 749-755

Released	2006-12-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) DNA primer strand (nucleic acid) DNA template strand (nucleic acid)
Unique Ligands	MG, TTP

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2FLN \| pdb_00002fln	Download File View File

binary complex of catalytic core of human DNA polymerase iota with DNA (template A)

Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.

(2006) Structure 14: 749-755

Released	2006-12-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) DNA primer strand (nucleic acid) DNA template strand (nucleic acid)

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2FLP \| pdb_00002flp	Download File View File

Binary complex of the catalytic core of human DNA polymerase iota with DNA (template G)

Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.

(2006) Structure 14: 749-755

Released	2006-12-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) DNA primer strand (nucleic acid) DNA template strand (nucleic acid)

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2KHU \| pdb_00002khu	Download File View File

Solution Structure of the Ubiquitin-Binding Motif of Human Polymerase Iota

Bomar, M.G., D'Souza, S., Bienko, M., Dikic, I., Walker, G.

(2010) Mol Cell 37: 408-417

Released	2010-02-23
Method	SOLUTION NMR
Organisms	Homo sapiens Streptococcus sp. 'group G
Macromolecule	Immunoglobulin G-binding protein G, DNA polymerase iota (protein)

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2KHW \| pdb_00002khw	Download File View File

Solution Structure of the human Polymerase iota UBM2-Ubiquitin Complex

Bomar, M.G., D'Souza, S., Bienko, M., Dikic, I., Walker, G.

To be published

Released	2010-02-23
Method	SOLUTION NMR
Organisms	Homo sapiens Streptococcus sp. 'group G
Macromolecule	Immunoglobulin G-binding protein G, DNA polymerase iota (protein) Ubiquitin (protein)

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2KTF \| pdb_00002ktf	Download File View File

Solution NMR structure of human polymerase iota UBM2 in complex with ubiquitin

Cui, G., Benirschke, R., Mer, G.

(2010) Biochemistry 49: 10198-10207

Released	2010-11-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) Ubiquitin (protein)

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2KWU \| pdb_00002kwu	Download File View File

Solution Structure of UBM2 of murine Polymerase iota in Complex with Ubiquitin

Burschowsky, D., Rudolf, F., Rabut, G., Herrmann, T., Peter, M., Wider, G.

(2011) J Biological Chem 286: 1364-1373

Released	2010-10-06
Method	SOLUTION NMR
Organisms	Homo sapiens Mus musculus
Macromolecule	DNA polymerase iota (protein) Ubiquitin (protein)

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2KWV \| pdb_00002kwv	Download File View File

Solution Structure of UBM1 of murine Polymerase iota in Complex with Ubiquitin

Burschowsky, D., Rudolf, F., Rabut, G., Herrmann, T., Peter, M., Wider, G.

(2011) J Biological Chem 286: 1364-1373

Released	2010-10-06
Method	SOLUTION NMR
Organisms	Homo sapiens Mus musculus
Macromolecule	DNA polymerase iota (protein) Ubiquitin (protein)

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3EPG \| pdb_00003epg	Download File View File

Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine

Pence, M.G.

(2009) J Biological Chem 284: 1732-1740

Released	2008-12-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) 5'-D(DTPDCPDTP(2EG)PDGPDGPDGPDTPDCPDCPDTPDAPDGPDGPDAPDCPDCP(DOC))-3' (nucleic acid)
Unique Ligands	DCP, NA

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3EPI \| pdb_00003epi	Download File View File

Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine and incoming TTP

Pence, M.G.

(2009) J Biological Chem 284: 1732-1740

Released	2008-12-16
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) 5'-D(DTPDCPDTP(2EG)PDGPDGPDGPDTPDCPDCPDTPDAPDGPDGPDAPDCPDCP(DOC))-3' (nucleic acid)
Unique Ligands	NA, PO4

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3G6V \| pdb_00003g6v	Download File View File

DNA synthesis across an abasic lesion by human DNA polymerase-iota

Nair, D.T., Aggarwal, A.K.

(2009) Structure 17: 530-537

Released	2009-05-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) Primer DNA strand (nucleic acid) Template DNA strand (nucleic acid)
Unique Ligands	ATP, MG

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3G6X \| pdb_00003g6x	Download File View File

Ternary complex of DNA Polymerase iota:DNA:dGTP with an abasic site at the templating position

Nair, D.T., Aggarwal, A.K.

(2009) Structure 17: 530-537

Released	2009-05-12
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) Primer DNA strand (nucleic acid) Template DNA strand (nucleic acid)
Unique Ligands	DGT, MG

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3G6Y \| pdb_00003g6y	Download File View File

Ternary complex of DNA Polymerase iota:DNA:dTTP with an abasic site at the templating position

Nair, D.T., Aggarwal, A.K.

(2009) Structure 17: 530-537

Released	2009-05-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) Primer DNA strand (nucleic acid) Template DNA strand (nucleic acid)
Unique Ligands	MG, TTP

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3GV5 \| pdb_00003gv5	Download File View File

Human DNA polymerase iota in complex with T template DNA and incoming ddADP

Kirouac, K.N., Ling, H.

(2009) EMBO J 28: 1644-1654

Released	2009-06-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) 5'-D(GPTPGPGPAPTPGPAPG)-3' (nucleic acid) 5'-D(PCPAPTPTPCPTPCPAPTPCPCPAPC)-3' (nucleic acid)
Unique Ligands	ADI, CA, GOL

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3GV7 \| pdb_00003gv7	Download File View File

Human DNA polymerase iota in complex with T template DNA and incoming dTTP

Kirouac, K.N., Ling, H.

(2009) EMBO J 28: 1644-1654

Released	2009-06-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) 5'-D(APGPGPAPCPCPC)-3' (nucleic acid) 5'-D(PAPTPGPGPGPTPCPCPT)-3' (nucleic acid)
Unique Ligands	MG, TTP

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3GV8 \| pdb_00003gv8	Download File View File

Human DNA polymerase iota in complex with T template DNA and incoming dGTP

Kirouac, K.N., Ling, H.

(2009) EMBO J 28: 1644-1654

Released	2009-06-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) 5'-D(APGPGPAPCPCPC)-3' (nucleic acid) 5'-D(APTPGPGPGPTPCPCPT)-3' (nucleic acid)
Unique Ligands	DGT, MG

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3H40 \| pdb_00003h40	Download File View File

Binary complex of human DNA polymerase iota with template U/T

Jain, R., Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.

(2009) Structure 17: 974-980

Released	2009-07-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) 5'-D(APGPGPAPCPCP(DOC))-3' (nucleic acid) 5'-D(TP(BRU)PGPGPGPTPCPCPT)-3' (nucleic acid)
Unique Ligands	SO4

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3H4B \| pdb_00003h4b	Download File View File

Ternary complex of human DNA polymerase iota with template U/T and incoming dATP

Jain, R., Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.

(2009) Structure 17: 974-980

Released	2009-07-21
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) 5'-D(APGPGPAPCPCP(DOC))-3' (nucleic acid) 5'-D(TP(BRU)PGPGPGPTPCPCPT)-3' (nucleic acid)
Unique Ligands	DTP, MG

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3H4D \| pdb_00003h4d	Download File View File

Ternary complex of human DNA polymerase iota with template U/T and incoming dGTP

Jain, R., Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.

(2009) Structure 17: 974-980

Released	2009-07-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) 5'-D(APGPGPAPCPCP(DOC)) (nucleic acid) 5'-D(TP(BRU)PGPGPGPTPCPCPT) (nucleic acid)
Unique Ligands	DGT, MG

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3NGD \| pdb_00003ngd	Download File View File

Structural Basis for Proficient Incorporation of dTTP Opposite O6-methylguanine by Human DNA Polymerase Iota

Pence, M.G.

(2010) J Biological Chem 285: 40666-40672

Released	2010-10-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) 5'-D(TPCPTP(6OG)PGPGPGPTPCPCPTPAPGPGPAPCPCP(DOC))-3' (nucleic acid)
Unique Ligands	DCP

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3OSN \| pdb_00003osn	Download File View File

Structural Basis for Proficient Incorporation of dTTP Opposite O6-Methylguanine by Human DNA Polymerase Iota

Pence, M.G.

(2010) J Biological Chem 285: 40666-40672

Released	2010-10-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) 5'-D(TPCPTP(6OG)PGPGPGPTPCPCPTPAPGPGPAPCPCP(DOC))-3' (nucleic acid)
Unique Ligands	MG, NA, TTP

1 to 25 of 55 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1T3N | pdb_00001t3n

1ZET | pdb_00001zet

2ALZ | pdb_00002alz

2DPJ | pdb_00002dpj

2FLL | pdb_00002fll

2FLN | pdb_00002fln

2FLP | pdb_00002flp

2KHU | pdb_00002khu

2KHW | pdb_00002khw

2KTF | pdb_00002ktf

2KWU | pdb_00002kwu

2KWV | pdb_00002kwv

3EPG | pdb_00003epg

3EPI | pdb_00003epi

3G6V | pdb_00003g6v

3G6X | pdb_00003g6x

3G6Y | pdb_00003g6y

3GV5 | pdb_00003gv5

3GV7 | pdb_00003gv7

3GV8 | pdb_00003gv8

3H40 | pdb_00003h40

3H4B | pdb_00003h4b

3H4D | pdb_00003h4d

3NGD | pdb_00003ngd

3OSN | pdb_00003osn