RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Gene Name = "lpiA"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 3 Structures.

Refinements

Structure Determination Methodology

experimental (3)

Scientific Name of Source Organism

	Rhizobium tropici CIAT 899 (2)
	Agrobacterium fabrum str. C58 (1)

Taxonomy

Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (2)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (3)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (1)
	3.5 - 4.0 (1)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (2)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Cyclic (2)
	Asymmetric (1)

AllSelected

1 to 3 of 3 Structures

Page 1 of 1

Sort by

Explore in 3D

5VRV \| pdb_00005vrv	Download File View File

2.05 Angstrom Resolution Crystal Structure of C-terminal Domain (DUF2156) of Putative Lysylphosphatidylglycerol Synthetase from Agrobacterium fabrum.

Minasov, G., Wawrzak, Z., Skarina, T., Grimshaw, S., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Protein regulated by acid pH (protein)
Unique Ligands	GOL, SO4

Explore in 3D

6LV0 \| pdb_00006lv0	Download File View File

Crystal structure of the soluble domain of the multiple peptide resistance factor (MprF) from Rhizobium tropici

Jiao, H.Z., Song, D.F., Liu, Z.F.

(2021) Nat Commun 12: 2927-2927

Released	2021-02-03
Method	X-RAY DIFFRACTION 1.998 Å
Organisms	Rhizobium tropici CIAT 899
Macromolecule	Low pH-inducible protein LpiA (protein)

Explore in 3D

6LVF \| pdb_00006lvf	Download File View File

Cryo-EM structure of the multiple peptide resistance factor (MprF) loaded with one lysyl-phosphatidylglycerol molecule

Song, D.F., Jiao, H.Z., Liu, Z.F.

(2021) Nat Commun 12: 2927-2927

Released	2021-02-03
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Rhizobium tropici CIAT 899
Macromolecule	Low pH-inducible protein LpiA (protein)
Unique Ligands	EV9, LHG, PGT

1 to 3 of 3 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5VRV | pdb_00005vrv

2.05 Angstrom Resolution Crystal Structure of C-terminal Domain (DUF2156) of Putative Lysylphosphatidylglycerol Synthetase from Agrobacterium fabrum.

6LV0 | pdb_00006lv0

Crystal structure of the soluble domain of the multiple peptide resistance factor (MprF) from Rhizobium tropici

6LVF | pdb_00006lvf

Cryo-EM structure of the multiple peptide resistance factor (MprF) loaded with one lysyl-phosphatidylglycerol molecule

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

5VRV | pdb_00005vrv

2.05 Angstrom Resolution Crystal Structure of C-terminal Domain (DUF2156) of Putative Lysylphosphatidylglycerol Synthetase from Agrobacterium fabrum.

6LV0 | pdb_00006lv0

Crystal structure of the soluble domain of the multiple peptide resistance factor (MprF) from Rhizobium tropici

6LVF | pdb_00006lvf

Cryo-EM structure of the multiple peptide resistance factor (MprF) loaded with one lysyl-phosphatidylglycerol molecule