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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy ID (Full Lineage) = "585035"

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Search Summary

This query matches 31 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

Escherichia coli S88 (31)

Taxonomy

Bacteria (31)

Experimental Method

	X-RAY DIFFRACTION (22)
	ELECTRON MICROSCOPY (8)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (31)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (2)
	2.5 - 3.0 (5)
	3.0 - 3.5 (7)
	3.5 - 4.0 (10)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2015 - 2019 (25)
	2020 - 2024 (6)

Enzyme Classification Name

	Transferases (10)
	Hydrolases (6)
	Isomerases (1)

Membrane Protein Annotation

	PDBTM (2)
	MemProtMD (1)
	OPM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (22)
	Cyclic (8)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (1)
	All alpha proteins (1)
	All beta proteins (1)
	Alpha and beta proteins (a+b) (1)
	Artifacts (1)

AllSelected

1 to 25 of 31 Polymer Entities

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4XPU: Entity 1	Download File View File

The crystal structure of EndoV from E.coli

Xie, W., Zhang, Z.

(2015) Sci Rep 5: 12754-12754

Released	2015-08-19
Method	X-RAY DIFFRACTION 2.4 Å
Chain IDs	A, B
Organism	Escherichia coli S88
Macromolecule	Endonuclease V

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5A43: Entity 1	Download File View File

Crystal structure of a dual topology fluoride ion channel.

Stockbridge, R.B., Kolmakova-Partensky, L., Shane, T., Koide, A., Koide, S., Miller, C., Newstead, S.

(2015) Nature 525: 548

Released	2015-09-02
Method	X-RAY DIFFRACTION 2.58 Å
Chain IDs	A, B
Organism	Escherichia coli S88
Macromolecule	PUTATIVE FLUORIDE ION TRANSPORTER CRCB

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5J30: Entity 55	Download File View File

Thermus thermophilus 70S termination complex containing E. coli RF1

Hoffer, E.D., Dunham, C.M.

(2016) Cell Rep 17: 11-18

Released	2016-10-12
Method	X-RAY DIFFRACTION 3.2 Å
Chain IDs	CB [auth QY], FD [auth XY]
Organism	Escherichia coli S88
Macromolecule	Peptide chain release factor 1

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5KOA: Entity 1	Download File View File

Structure of Escherichia coli ZapD bound to the C-terminal tail of FtsZ

Schumacher, M.

To be published

Released	2017-01-25
Method	X-RAY DIFFRACTION 2.67 Å
Chain IDs	A, B
Organism	Escherichia coli S88
Macromolecule	Cell division protein ZapD

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5LM7: Entity 2	Download File View File

Crystal structure of the lambda N-Nus factor complex

Said, N., Santos, K., Weber, G., Wahl, M.C.

(2017) Nat Microbiol 2: 17062-17062

Released	2017-04-05
Method	X-RAY DIFFRACTION 3.35 Å
Chain IDs	B, G [auth D]
Organism	Escherichia coli S88
Macromolecule	N utilization substance protein B homolog

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5LM7: Entity 3	Download File View File

Crystal structure of the lambda N-Nus factor complex

Said, N., Santos, K., Weber, G., Wahl, M.C.

(2017) Nat Microbiol 2: 17062-17062

Released	2017-04-05
Method	X-RAY DIFFRACTION 3.35 Å
Chain IDs	C [auth J], H [auth E]
Organism	Escherichia coli S88
Macromolecule	30S ribosomal protein S10

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5MTF: Entity 1	Download File View File

A modular route to novel potent and selective inhibitors of rhomboid intramembrane proteases

Ticha, A., Stanchev, S., Vinothkumar, K.R., Mikles, D.C., Pachl, P., Svehlova, K., Nguyen, M.T.N., Verhelst, S.H.L., Johnson, D., Bachovchin, D., Lepsik, M., Majer, P., Strisovsky, K.

(2017) Cell Chem Biol 24: 1523-1536.e4

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.79 Å
Chain ID	A
Organism	Escherichia coli S88
Macromolecule	Rhomboid protease GlpG

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5NB9: Entity 1	Download File View File

Structure of the N-terminal domain of the Escherichia Coli ProQ RNA binding protein

Gonzales, G., Hardwick, S., Maslen, S., Skehel, M., Holmqvist, E., Vogel, J., Bateman, A., Luisi, B., Broadhurst, R.

(2017) RNA 23: 696-711

Released	2017-05-03
Method	SOLUTION NMR
Chain ID	A
Organism	Escherichia coli S88
Macromolecule	RNA chaperone ProQ

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5NEW: Entity 1	Download File View File

RNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimer

Schulz, E.C., Barabas, O.

(2017) Sci Rep 7: 9903-9903

Released	2017-10-04
Method	X-RAY DIFFRACTION 2.511 Å
Chain IDs	A, B
Organism	Escherichia coli S88
Macromolecule	RNA-binding protein Hfq

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5TBZ: Entity 2	Download File View File

E. Coli RNA Polymerase complexed with NusG

Liu, B., Steitz, T.A.

(2017) Nucleic Acids Res 45: 968-974

Released	2016-12-07
Method	X-RAY DIFFRACTION 7 Å
Chain IDs	C, G [auth H]
Organism	Escherichia coli S88
Macromolecule	DNA-directed RNA polymerase subunit beta

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5UI8: Entity 2	Download File View File

structure of sigmaN-holoenzyme

Darst, S.A., Campbell, E.A.

(2017) Proc Natl Acad Sci U S A 114: E1805-E1814

Released	2017-02-22
Method	X-RAY DIFFRACTION 3.76 Å
Chain ID	C [auth I]
Organism	Escherichia coli S88
Macromolecule	DNA-directed RNA polymerase subunit beta

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5UI8: Entity 4	Download File View File

structure of sigmaN-holoenzyme

Darst, S.A., Campbell, E.A.

(2017) Proc Natl Acad Sci U S A 114: E1805-E1814

Released	2017-02-22
Method	X-RAY DIFFRACTION 3.76 Å
Chain ID	E [auth K]
Organism	Escherichia coli S88
Macromolecule	DNA-directed RNA polymerase subunit omega

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5VCB: Entity 2	Download File View File

Crystal structure of holo-(acyl-carrier-protein) synthase:holo(acyl-carrier-protein) complex from Escherichia Coli.

Marcella, A.M., Barb, A.W.

(2017) J Mol Biology 429: 3763-3775

Released	2017-11-01
Method	X-RAY DIFFRACTION 4.1 Å
Chain IDs	BA [auth X], CA [auth W], D [auth f], DA [auth V], E [auth e] More (15)
Organism	Escherichia coli S88
Macromolecule	Acyl carrier protein

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5VMQ: Entity 1	Download File View File

STRUCTURE OF THE R105A MUTANT CATALYTIC TRIMER OF ESCHERICHIA COLI ASPARTATE TRANSCARBAMOYLASE AT 2.0-A RESOLUTION

Beernink, P.T., Endrizzi, J.A.

(2017) Protein Sci 26: 2221-2228

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.012 Å
Chain IDs	A, B, C
Organism	Escherichia coli S88
Macromolecule	Aspartate carbamoyltransferase

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5WFE: Entity 7	Download File View File

Cas1-Cas2-IHF-DNA holo-complex

Wright, A.V., Liu, J.J., Nogales, E., Doudna, J.A.

(2017) Science 357: 1113-1118

Released	2017-08-02
Method	ELECTRON MICROSCOPY 3.64 Å
Chain ID	K
Organism	Escherichia coli S88
Macromolecule	Integration host factor subunit alpha

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5WFE: Entity 8	Download File View File

Cas1-Cas2-IHF-DNA holo-complex

Wright, A.V., Liu, J.J., Nogales, E., Doudna, J.A.

(2017) Science 357: 1113-1118

Released	2017-08-02
Method	ELECTRON MICROSCOPY 3.64 Å
Chain ID	L
Organism	Escherichia coli S88
Macromolecule	Integration host factor subunit beta

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5WGB: Entity 3	Download File View File

Crystal Structure of the Human mitochondrial Cysteine Desulfurase in complex with ISD11 and E. coli ACP1 protein at 2.75A

Boniecki, M.T., Cygler, M.

(2017) Nat Commun 8: 1287-1287

Released	2017-07-26
Method	X-RAY DIFFRACTION 2.75 Å
Chain ID	C
Organism	Escherichia coli S88
Macromolecule	Acyl carrier protein

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5WLW: Entity 3	Download File View File

Crystal Structure of the Human Mitochondrial Cysteine Desulfurase with active Cysteine Loop within ISCU1 active site, coordinating Zn ion. Complexed with human ISD11 and E. coli ACP1 at 3.3A.

Boniecki, M.T., Cygler, M.

(2017) Nat Commun 8: 1287-1287

Released	2017-11-15
Method	X-RAY DIFFRACTION 3.317 Å
Chain IDs	C, G
Organism	Escherichia coli S88
Macromolecule	Acyl carrier protein

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6B6H: Entity 2	Download File View File

The cryo-EM structure of a bacterial class I transcription activation complex

Liu, B., Hong, C., Huang, R., Yu, Z., Steitz, T.A.

(2017) Science 358: 947-951

Released	2017-11-15
Method	ELECTRON MICROSCOPY 3.9 Å
Chain ID	C
Organism	Escherichia coli S88
Macromolecule	DNA-directed RNA polymerase subunit beta

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6B6H: Entity 4	Download File View File

The cryo-EM structure of a bacterial class I transcription activation complex

Liu, B., Hong, C., Huang, R., Yu, Z., Steitz, T.A.

(2017) Science 358: 947-951

Released	2017-11-15
Method	ELECTRON MICROSCOPY 3.9 Å
Chain ID	E
Organism	Escherichia coli S88
Macromolecule	DNA-directed RNA polymerase subunit omega

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6BDG: Entity 1	Download File View File

HFQ monomer in spacegroup p6 at 1.93 angstrom resolution

Brown, C., Zhang, K., Seo, C., Ellis, M.J., Hanniford, D.B., Junop, M.

To be published

Released	2017-11-01
Method	X-RAY DIFFRACTION 1.964 Å
Chain ID	A
Organism	Escherichia coli S88
Macromolecule	RNA-binding protein Hfq

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6BOG: Entity 1	Download File View File

Crystal structure of RapA, a Swi2/Snf2 protein that recycles RNA polymerase during transcription

Shaw, G.X., Gan, J., Zhou, Y.N., Zhang, R., Joachimiak, A., Jin, D.J., Ji, X.

(2008) Structure 16: 1417-1427

Released	2017-12-13
Method	X-RAY DIFFRACTION 3.205 Å
Chain IDs	A, B
Organism	Escherichia coli S88
Macromolecule	RNA polymerase-associated protein RapA

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6D13: Entity 1	Download File View File

Crystal structure of E.coli RppH-DapF complex

Gao, A., Serganov, A.

(2018) Nucleic Acids Res 46: 6841-6856

Released	2018-05-23
Method	X-RAY DIFFRACTION 3.06 Å
Chain ID	A
Organism	Escherichia coli S88
Macromolecule	Diaminopimelate epimerase

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6D13: Entity 2	Download File View File

Crystal structure of E.coli RppH-DapF complex

Gao, A., Serganov, A.

(2018) Nucleic Acids Res 46: 6841-6856

Released	2018-05-23
Method	X-RAY DIFFRACTION 3.06 Å
Chain ID	B
Organism	Escherichia coli S88
Macromolecule	RNA pyrophosphohydrolase

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6H9O: Entity 2	Download File View File

Complex of the periplasmic domains of bacterial cell division proteins FtsQ and FtsB

Kureisaite-Ciziene, D., Lowe, J.

(2018) mBio 9:

Released	2018-09-05
Method	X-RAY DIFFRACTION 2.8 Å
Chain IDs	B, D
Organism	Escherichia coli S88
Macromolecule	Cell division protein FtsB

1 to 25 of 31 Polymer Entities

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification