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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Aquifex aeolicus"

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Search Summary

This query matches 632 Structures.

Refinements

Structure Determination Methodology

experimental (632)

Scientific Name of Source Organism

	Aquifex aeolicus (322)
	Aquifex aeolicus VF5 (317)
	Thermotoga maritima MSB8 (11)
	Rattus norvegicus (7)
	Lama glama (6)
	synthetic construct (6)
	Escherichia coli (5)
	Homo sapiens (5)
	Lambdavirus lambda (5)
	Mus musculus (5)

More...

Taxonomy

	Bacteria (632)
	Eukaryota (21)
	Duplodnaviria (6)
	other sequences (6)
	Archaea (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (574)
	ELECTRON MICROSCOPY (41)
	SOLUTION NMR (17)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (632)
	RNA (42)
	DNA (10)

Refinement Resolution (Å)

	1.0 - 1.5 (30)
	1.5 - 2.0 (154)
	2.0 - 2.5 (207)
	2.5 - 3.0 (102)
	3.0 - 3.5 (75)
	3.5 - 4.0 (29)
	4.0 - 4.5 (9)
	> 4.5 (9)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (69)
	2005 - 2009 (224)
	2010 - 2014 (125)
	2015 - 2019 (104)
	2020 - 2024 (98)
	2025 - 2029 (9)

Enzyme Classification Name

	Transferases (191)
	Hydrolases (91)
	Translocases (35)
	Oxidoreductases (30)
	Ligases (34)
	Lyases (31)
	Isomerases (2)

Membrane Protein Annotation

	PDBTM (104)
	MemProtMD (82)
	mpstruc (76)
	OPM (50)

Symmetry Type

	Asymmetric (351)
	Cyclic (249)
	Dihedral (82)
	Icosahedral (14)
	Tetrahedral (9)
	Helical (3)

SCOP Classification

	Alpha and beta proteins (a/b) (143)
	Alpha and beta proteins (a+b) (91)
	All alpha proteins (39)
	Artifacts (55)
	All beta proteins (24)
	Membrane and cell surface proteins and peptides (53)
	Multi-domain proteins (alpha and beta) (3)

AllSelected

1 to 25 of 632 Structures

Page 1 of 26

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1C3P \| pdb_00001c3p	Download File View File

CRYSTAL STRUCTURE OF AN HDAC HOMOLOG FROM AQUIFEX AEOLICUS

Finnin, M.S., Donigian, J.R., Pavletich, N.P.

(1999) Nature 401: 188-193

Released	1999-09-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aquifex aeolicus
Macromolecule	PROTEIN (HDLP (HISTONE DEACETYLASE-LIKE PROTEIN)) (protein)

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1C3R \| pdb_00001c3r	Download File View File

CRYSTAL STRUCTURE OF AN HDAC HOMOLOG COMPLEXED WITH TRICHOSTATIN A

Finnin, M.S., Donigian, J.R., Pavletich, N.P.

(1999) Nature 401: 188-193

Released	1999-09-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Aquifex aeolicus
Macromolecule	HDLP (HISTONE DEACETYLASE-LIKE PROTEIN) (protein)
Unique Ligands	TSN, ZN

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1C3S \| pdb_00001c3s	Download File View File

CRYSTAL STRUCTURE OF AN HDAC HOMOLOG COMPLEXED WITH SAHA

Finnin, M.S., Donigian, J.R., Pavletich, N.P.

(1999) Nature 401: 188-193

Released	1999-09-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Aquifex aeolicus
Macromolecule	HDLP (HISTONE DEACETYLASE-LIKE PROTEIN) (protein)
Unique Ligands	SHH, ZN

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1F37 \| pdb_00001f37	Download File View File

STRUCTURE OF A THIOREDOXIN-LIKE [2FE-2S] FERREDOXIN FROM AQUIFEX AEOLICUS

Yeh, A.P., Chatelet, C., Soltis, S.M., Kuhn, P., Meyer, J., Rees, D.C.

(2000) J Mol Biology 300: 587-595

Released	2000-07-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aquifex aeolicus
Macromolecule	FERREDOXIN [2FE-2S] (protein)
Unique Ligands	FES, GOL

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1FWN \| pdb_00001fwn	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2001) J Biological Chem 276: 8393-8402

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	PEP, PO4

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1FWS \| pdb_00001fws	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP AND CADMIUM

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2009) Biochemistry 48: 3610-3630

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	CD, PEP, PO4

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1FWT \| pdb_00001fwt	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP, E4P AND CADMIUM

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2001) J Biological Chem 276: 8393-8402

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	CD, E4P, PEP, PO4

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1FWW \| pdb_00001fww	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP, A5P AND CADMIUM

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2009) Biochemistry 48: 3610-3630

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	A5P, CD, PEP, PO4

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1FX6 \| pdb_00001fx6	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2001) J Biological Chem 276: 8393-8402

Released	2001-04-21
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	PO4

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1FXP \| pdb_00001fxp	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH CADMIUM

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2001) J Biological Chem 276: 8393-8402

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	CD, PO4

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1FXQ \| pdb_00001fxq	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP AND A5P

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2001) J Biological Chem 276: 8393-8402

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	A5P, PEP

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1FY6 \| pdb_00001fy6	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH CADMIUM AND A5P

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2001) J Biological Chem 276: 8393-8402

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	A5P, CD, PO4

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1GE9 \| pdb_00001ge9	Download File View File

SOLUTION STRUCTURE OF THE RIBOSOME RECYCLING FACTOR

Yoshida, T., Uchiyama, S., Nakano, H., Kashimori, H., Kijima, H., Ohshima, T., Saihara, Y., Ishino, T., Shimahara, T., Yoshida, T., Yokose, K., Ohkubo, T., Kaji, A., Kobayashi, Y.

(2001) Biochemistry 40: 2387-2396

Released	2001-05-16
Method	SOLUTION NMR
Organisms	Aquifex aeolicus
Macromolecule	RIBOSOME RECYCLING FACTOR (protein)

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1GYZ \| pdb_00001gyz	Download File View File

Bacterial ribosomal protein L20 from Aquifex aeolicus

Raibaud, S., Lebars, I., Bontems, F., Dardel, F.

(2002) J Mol Biology 323: 143

Released	2002-05-10
Method	SOLUTION NMR
Organisms	Aquifex aeolicus VF5
Macromolecule	50S RIBOSOMAL PROTEIN L20 (protein)

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1HQK \| pdb_00001hqk	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF LUMAZINE SYNTHASE FROM AQUIFEX AEOLICUS

Zhang, X., Meining, W., Fischer, M., Bacher, A., Ladenstein, R.

(2001) J Mol Biology 306: 1099-1114

Released	2001-12-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Aquifex aeolicus
Macromolecule	6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE (protein)

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1I4S \| pdb_00001i4s	Download File View File

CRYSTAL STRUCTURE OF RNASE III ENDONUCLEASE DOMAIN FROM AQUIFEX AEOLICUS AT 2.15 ANGSTROM RESOLUTION

Blaszczyk, J., Ji, X.

(2001) Structure 9: 1225-1236

Released	2001-12-19
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Aquifex aeolicus
Macromolecule	RIBONUCLEASE III (protein)

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1JCX \| pdb_00001jcx	Download File View File

Aquifex aeolicus KDO8P synthase in complex with API and Cadmium

Wang, J., Duewel, H.S., Woodard, R.W., Gatti, D.L.

(2001) Biochemistry 40: 15676-15683

Released	2002-01-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	CD, PAI

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1JCY \| pdb_00001jcy	Download File View File

Aquifex aeolicus KDO8P synthase in complex with R5P, PEP and Cadmium

Wang, J., Duewel, H.S., Woodard, R.W., Gatti, D.L.

(2001) Biochemistry 40: 15676-15683

Released	2002-01-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	CD, PEP, PO4, R5P

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1JFZ \| pdb_00001jfz	Download File View File

Crystal Structure of MN(II)-Complex of RNAse III Endonuclease Domain from Aquifex Aeolicus at 2.10 Angstrom Resolution

Blaszczyk, J., Ji, X.

(2001) Structure 9: 1225-1236

Released	2001-12-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Aquifex aeolicus
Macromolecule	RIBONUCLEASE III (protein)
Unique Ligands	MN

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1K8H \| pdb_00001k8h	Download File View File

NMR Structure of Small Protein B (SmpB) from Aquifex aeolicus

Dong, G., Hoffman, D.W.

(2002) EMBO J 21: 1845-1854

Released	2002-03-20
Method	SOLUTION NMR
Organisms	Aquifex aeolicus
Macromolecule	Small protein B (protein)

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1L8Q \| pdb_00001l8q	Download File View File

CRYSTAL STRUCTURE OF DNA REPLICATION INITIATION FACTOR

Erzberger, J.P., Pirruccello, M.M., Berger, J.M.

(2002) EMBO J 21: 4763-4773

Released	2002-09-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Aquifex aeolicus
Macromolecule	Chromosomal replication initiator protein dnaA (protein)
Unique Ligands	ADP, MG

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1LFP \| pdb_00001lfp	Download File View File

Crystal Structure of a Conserved Hypothetical Protein Aq1575 from Aquifex Aeolicus

Shin, D.H., Yokota, H., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2002) Proc Natl Acad Sci U S A 99: 7980-7985

Released	2002-06-19
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Aquifex aeolicus
Macromolecule	Hypothetical protein AQ_1575 (protein)

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1LRN \| pdb_00001lrn	Download File View File

Aquifex aeolicus KDO8P synthase H185G mutant in complex with Cadmium

Wang, J., Duewel, H.S., Stuckey, J.A., Woodard, R.W., Gatti, D.L.

(2002) J Mol Biology 324: 205-214

Released	2002-11-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Aquifex aeolicus
Macromolecule	KDO-8-phosphate synthetase (protein)
Unique Ligands	CD, PO4

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1LRO \| pdb_00001lro	Download File View File

Aquifex aeolicus KDO8P synthase H185G mutant in complex with PEP and Cadmium

Wang, J., Duewel, H.S., Stuckey, J.A., Woodard, R.W., Gatti, D.L.

(2002) J Mol Biology 324: 205-214

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aquifex aeolicus
Macromolecule	KDO-8-phosphate synthetase (protein)
Unique Ligands	CD, PEP, PO4

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1LRQ \| pdb_00001lrq	Download File View File

Aquifex aeolicus KDO8P synthase H185G mutant in complex with PEP, A5P and Cadmium

Wang, J., Duewel, H.S., Stuckey, J.A., Woodard, R.W., Gatti, D.L.

(2002) J Mol Biology 324: 205-214

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aquifex aeolicus
Macromolecule	KDO-8-phosphate synthetase (protein)
Unique Ligands	A5P, CD, PEP, PO4

1 to 25 of 632 Structures

Page 1 of 26

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1C3P | pdb_00001c3p

1C3R | pdb_00001c3r

1C3S | pdb_00001c3s

1F37 | pdb_00001f37

1FWN | pdb_00001fwn

1FWS | pdb_00001fws

1FWT | pdb_00001fwt

1FWW | pdb_00001fww

1FX6 | pdb_00001fx6

1FXP | pdb_00001fxp

1FXQ | pdb_00001fxq

1FY6 | pdb_00001fy6

1GE9 | pdb_00001ge9

1GYZ | pdb_00001gyz

1HQK | pdb_00001hqk

1I4S | pdb_00001i4s

1JCX | pdb_00001jcx

1JCY | pdb_00001jcy

1JFZ | pdb_00001jfz

1K8H | pdb_00001k8h

1L8Q | pdb_00001l8q

1LFP | pdb_00001lfp

1LRN | pdb_00001lrn

1LRO | pdb_00001lro

1LRQ | pdb_00001lrq