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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Clostridium botulinum"

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Search Summary

This query matches 292 Structures.

Refinements

Structure Determination Methodology

experimental (292)

Scientific Name of Source Organism

	Clostridium botulinum (249)
	Homo sapiens (35)
	Clostridium botulinum A str. Hall (16)
	Vicugna pacos (16)
	synthetic construct (9)
	Clostridium botulinum A str. ATCC 19397 (6)
	Clostridium botulinum E1 str. 'BoNT E Beluga (6)
	Clostridium botulinum Prevot_594 (3)
	Mus musculus (3)
	Rattus norvegicus (3)

More...

Taxonomy

	Bacteria (292)
	Eukaryota (55)
	other sequences (9)
	Eukaryota (eukaryotes) (3)
	unclassified sequences (2)

Experimental Method

	X-RAY DIFFRACTION (265)
	ELECTRON MICROSCOPY (27)

Polymer Entity Type

	Protein (291)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (16)
	1.5 - 2.0 (77)
	2.0 - 2.5 (94)
	2.5 - 3.0 (66)
	3.0 - 3.5 (17)
	3.5 - 4.0 (13)
	4.0 - 4.5 (5)
	> 4.5 (4)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (23)
	2005 - 2009 (67)
	2010 - 2014 (73)
	2015 - 2019 (46)
	2020 - 2024 (69)
	2025 - 2029 (13)

Enzyme Classification Name

	Hydrolases (139)
	Transferases (14)
	Lyases (2)
	Oxidoreductases (1)

Membrane Protein Annotation

	PDBTM (6)
	MemProtMD (4)

Symmetry Type

	Asymmetric (250)
	Cyclic (41)
	Dihedral (5)
	Helical (4)

SCOP Classification

	All beta proteins (85)
	Alpha and beta proteins (a+b) (103)
	Artifacts (58)
	Coiled coil proteins (18)
	Alpha and beta proteins (a/b) (4)
	All alpha proteins (1)

AllSelected

1 to 25 of 292 Structures

Page 1 of 12

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1E1H \| pdb_00001e1h	Download File View File

Crystal Structure of recombinant Botulinum Neurotoxin Type A Light Chain, self-inhibiting Zn endopeptidase.

Knapp, M., Rupp, B.

(2004) Proc Natl Acad Sci U S A 101: 6888

Released	2003-06-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN TYPE A LIGHT CHAIN (protein)
Unique Ligands	ZN

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1EPW \| pdb_00001epw	Download File View File

CRYSTAL STRUCTURE OF CLOSTRIDIUM NEUROTOXIN TYPE B

Swaminathan, S., Eswaramoorthy, S.

(2000) Nat Struct Biol 7: 693-699

Released	2000-11-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN TYPE B (protein)
Unique Ligands	SO4, ZN

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1F31 \| pdb_00001f31	Download File View File

CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH A TRISACCHARIDE

Swaminathan, S., Eswaramoorthy, S.

(2000) Nat Struct Biol 7: 693-699

Released	2000-11-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN TYPE B (protein)
Unique Ligands	SO4, ZN
Unique branched monosaccharides	GLA, GLC, SIA

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1F82 \| pdb_00001f82	Download File View File

BOTULINUM NEUROTOXIN TYPE B CATALYTIC DOMAIN

Hanson, M.A., Stevens, R.C.

(2000) Nat Struct Biol 7: 687-692

Released	2000-08-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN TYPE B (protein)
Unique Ligands	ZN

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1G24 \| pdb_00001g24	Download File View File

THE CRYSTAL STRUCTURE OF EXOENZYME C3 FROM CLOSTRIDIUM BOTULINUM

Han, S., Arvai, A.S., Clancy, S.B., Tainer, J.A.

(2001) J Mol Biology 305: 95-107

Released	2000-12-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Clostridium botulinum
Macromolecule	EXOENZYME C3 (protein)

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1G9A \| pdb_00001g9a	Download File View File

CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH AN INHIBITOR (EXPERIMENT 3)

Eswaramoorthy, S., Swaminathan, S.

(2002) Biochemistry 41: 9795-9802

Released	2002-11-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN TYPE B (protein)
Unique Ligands	BAB, ZN

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1G9B \| pdb_00001g9b	Download File View File

CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH AN INHIBITOR (EXPERIMENT 1)

Eswaramoorthy, S., Swaminathan, S.

(2002) Biochemistry 41: 9795-9802

Released	2002-11-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN TYPE B (protein)
Unique Ligands	BAB, ZN

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1G9C \| pdb_00001g9c	Download File View File

CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH AN INHIBITOR (EXPERIMENT 4)

Eswaramoorthy, S., Swaminathan, S.

(2002) Biochemistry 41: 9795-9802

Released	2002-11-13
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN TYPE B (protein)
Unique Ligands	BAB, ZN

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1G9D \| pdb_00001g9d	Download File View File

CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH AN INHIBITOR (EXPERIMENT 2)

Eswaramoorthy, S., Swaminathan, S.

(2002) Biochemistry 41: 9795-9802

Released	2002-11-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN TYPE B (protein)
Unique Ligands	BAB, ZN

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1GZE \| pdb_00001gze	Download File View File

Structure of the Clostridium botulinum C3 exoenzyme (L177C mutant)

Menetrey, J., Flatau, G., Stura, E.A., Charbonnier, J.B., Gas, F., Teulon, J.M., Le Du, M.H., Boquet, P., Menez, A.

(2002) J Biological Chem 277: 30950

Released	2002-08-29
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Clostridium botulinum
Macromolecule	MONO-ADP-RIBOSYLTRANSFERASE C3 (protein)
Unique Ligands	HG

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1GZF \| pdb_00001gzf	Download File View File

Structure of the Clostridium botulinum C3 exoenzyme (wild-type) in complex with NAD

Menetrey, J., Flatau, G., Stura, E.A., Charbonnier, J.B., Gas, F., Teulon, J.M., Le Du, M.H., Boquet, P., Menez, A.

(2002) J Biological Chem 277: 30950

Released	2002-08-29
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Clostridium botulinum
Macromolecule	MONO-ADP-RIBOSYLTRANSFERASE C3 (protein)
Unique Ligands	ADP, NAD, NIR, SO4

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1I1E \| pdb_00001i1e	Download File View File

CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH DOXORUBICIN

Eswaramoorthy, S., Kumaran, D., Swaminathan, S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1743-1746

Released	2001-11-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN TYPE B (protein)
Unique Ligands	DM2, SO4, ZN

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1S0B \| pdb_00001s0b	Download File View File

Crystal structure of botulinum neurotoxin type B at pH 4.0

Eswaramoorthy, S., Kumaran, D., Keller, J., Swaminathan, S.

(2004) Biochemistry 43: 2209-2216

Released	2004-03-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Clostridium botulinum
Macromolecule	Botulinum neurotoxin type B (protein)
Unique Ligands	CA

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1S0C \| pdb_00001s0c	Download File View File

Crystal structure of botulinum neurotoxin type B at pH 5.0

Eswaramoorthy, S., Kumaran, D., Keller, J., Swaminathan, S.

(2004) Biochemistry 43: 2209-2216

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Clostridium botulinum
Macromolecule	Botulinum neurotoxin type B (protein)
Unique Ligands	CA, ZN

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1S0D \| pdb_00001s0d	Download File View File

Crystal structure of botulinum neurotoxin type B at pH 5.5

Eswaramoorthy, S., Kumaran, D., Keller, J., Swaminathan, S.

(2004) Biochemistry 43: 2209-2216

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Clostridium botulinum
Macromolecule	Botulinum neurotoxin type B (protein)
Unique Ligands	CA, ZN

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1S0E \| pdb_00001s0e	Download File View File

Crystal structure of botulinum neurotoxin type B at pH 6.0

Eswaramoorthy, S., Kumaran, D., Keller, J., Swaminathan, S.

(2004) Biochemistry 43: 2209-2216

Released	2004-03-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium botulinum
Macromolecule	Botulinum neurotoxin type B (protein)
Unique Ligands	CA, ZN

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1S0F \| pdb_00001s0f	Download File View File

Crystal structure of botulinum neurotoxin type B at pH 7.0

Eswaramoorthy, S., Kumaran, D., Keller, J., Swaminathan, S.

(2004) Biochemistry 43: 2209-2216

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Clostridium botulinum
Macromolecule	Botulinum neurotoxin type B (protein)
Unique Ligands	CA, ZN

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1S0G \| pdb_00001s0g	Download File View File

Crystal structure of botulinum neurotoxin type B apo form

Eswaramoorthy, S., Kumaran, D., Keller, J., Swaminathan, S.

(2004) Biochemistry 43: 2209-2216

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Clostridium botulinum
Macromolecule	Botulinum neurotoxin type B (protein)

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1T3A \| pdb_00001t3a	Download File View File

Crystal structure of Clostridium botulinum neurotoxin type E catalytic domain

Agarwal, R., Eswaramoorthy, S., Kumaran, D., Binz, T., Swaminathan, S.

(2004) Biochemistry 43: 6637-6644

Released	2004-06-29
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Clostridium botulinum
Macromolecule	neurotoxin type E (protein)
Unique Ligands	CL, ZN

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1T3C \| pdb_00001t3c	Download File View File

Clostridium botulinum type E catalytic domain E212Q mutant

Agarwal, R., Eswaramoorthy, S., Kumaran, D., Binz, T., Swaminathan, S.

(2004) Biochemistry 43: 6637-6644

Released	2004-06-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium botulinum
Macromolecule	neurotoxin type E (protein)
Unique Ligands	CL, ZN

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1UZI \| pdb_00001uzi	Download File View File

C3 EXOENZYME FROM CLOSTRIDIUM BOTULINUM, TETRAGONAL FORM

Evans, H.R., Holloway, D.E., Sutton, J.M., Ayriss, J., Shone, C.C., Acharya, K.R.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1502

Released	2004-07-29
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Clostridium botulinum
Macromolecule	MONO-ADP-RIBOSYLTRANSFERASE C3 (protein)
Unique Ligands	GOL, V4O, VO4

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1XTF \| pdb_00001xtf	Download File View File

neurotoxin BoNT/A E224Q Y366F mutant

Breidenbach, M.A., Brunger, A.T.

(2004) Nature 432: 925-929

Released	2004-12-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Clostridium botulinum
Macromolecule	neurotoxin BoNT/A (protein)
Unique Ligands	ZN

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1XTG \| pdb_00001xtg	Download File View File

Crystal structure of NEUROTOXIN BONT/A complexed with Synaptosomal-associated protein 25

Breidenbach, M.A., Brunger, A.T.

(2004) Nature 432: 925-929

Released	2004-12-21
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Clostridium botulinum Homo sapiens
Macromolecule	NEUROTOXIN BONT/A (protein) Synaptosomal-associated protein 25 (protein)
Unique Ligands	CL, ZN