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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Coxsackievirus A9"

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This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Human coxsackievirus A9 (strain Griggs) (9)
	Coxsackievirus A9 (4)

Taxonomy

Riboviria (13)

Experimental Method

	ELECTRON MICROSCOPY (12)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

Protein (13)

Refinement Resolution (Å)

	2.0 - 2.5 (2)
	2.5 - 3.0 (8)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	1995 - 1999 (1)
	2010 - 2014 (1)
	2020 - 2024 (11)

Symmetry Type

Icosahedral (13)

SCOP Classification

All beta proteins (1)

AllSelected

1 to 13 of 13 Structures

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1D4M \| pdb_00001d4m	Download File View File

THE CRYSTAL STRUCTURE OF COXSACKIEVIRUS A9 TO 2.9 A RESOLUTION

Hendry, E., Hatanaka, H., Fry, E., Smyth, M., Tate, J., Stanway, G., Santti, J., Maaronen, M., Hyypia, T., Stuart, D.

(1999) Structure 7: 1527-1538

Released	1999-12-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Coxsackievirus A9
Macromolecule	PROTEIN (COXSACKIEVIRUS A9) (protein)
Unique Ligands	MYR, W71

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3J2J \| pdb_00003j2j	Download File View File

Empty coxsackievirus A9 capsid

Shakeel, S., Seitsonen, J.J.T., Kajander, T., Laurinmaki, P., Hyypia, T., Susi, P., Butcher, S.J.

(2013) J Virol 87: 3943-3951

Released	2013-07-17
Method	ELECTRON MICROSCOPY 9.54 Å
Organisms	Coxsackievirus A9
Macromolecule	Protein VP1 (protein) Protein VP2 (protein) Protein VP3 (protein)

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8AT5 \| pdb_00008at5	Download File View File

native Coxsackievirus A9

Domanska, A., Plavec, Z., Ruokolainen, V., Marjomaki, V.S., Butcher, S.J.

(2022) J Virol 96: e0136722-e0136722

Released	2022-11-16
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Human coxsackievirus A9 (strain Griggs)
Macromolecule	Capsid protein VP1 (protein) Capsid protein VP2 (protein) Capsid protein VP3 (protein) Capsid protein VP4 (protein)
Unique Ligands	MYR, PLM

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8AW6 \| pdb_00008aw6	Download File View File

Expanded Coxsackievirus A9 after 0.01% faf-BSA treatment

Domanska, A., Plavec, Z., Ruokolainen, V., Loflund, B., Marjomaki, V.S., Butcher, S.J.

(2022) J Virol 96: e0136722-e0136722

Released	2022-10-26
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Human coxsackievirus A9 (strain Griggs)
Macromolecule	Capsid protein VP1 (protein) Capsid protein VP2 (protein) Capsid protein VP3 (protein)

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8AXX \| pdb_00008axx	Download File View File

Expanded Coxsackievirus A9 after treatment with endosomal ionic buffer

Domanska, A., Plavec, Z., Ruokolainen, V., Loflund, B., Marjomaki, V.S., Butcher, S.J.

(2022) J Virol 96: e0136722-e0136722

Released	2022-10-19
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Human coxsackievirus A9 (strain Griggs)
Macromolecule	Capsid protein VP1 (protein) Capsid protein VP2 (protein) Capsid protein VP3 (protein)

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8S7J \| pdb_00008s7j	Download File View File

Coxsackievirus A9 bound with compound 20 (CL300)

Plavec, Z., Butcher, S.J., Mitchell, C., Buckner, C.

(2024) J Med Chem 67: 17144-17161

Released	2024-10-02
Method	ELECTRON MICROSCOPY 2.26 Å
Organisms	Human coxsackievirus A9 (strain Griggs)
Macromolecule	Capsid protein VP1 (protein) Capsid protein VP2 (protein) Capsid protein VP3 (protein) Capsid protein VP4 (protein)
Unique Ligands	A1H9Q, MYR

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9EXI \| pdb_00009exi	Download File View File

Coxsackievirus A9 bound with compound 14 (CL275)

Plavec, Z., Butcher, S.J., Mitchell, C., Buckner, C.

(2024) J Med Chem 67: 17144-17161

Released	2024-10-02
Method	ELECTRON MICROSCOPY 2.31 Å
Organisms	Human coxsackievirus A9 (strain Griggs)
Macromolecule	Capsid protein VP1 (protein) Capsid protein VP2 (protein) Capsid protein VP3 (protein) Capsid protein VP4 (protein)
Unique Ligands	A1H8J, MYR

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9FA9 \| pdb_00009fa9	Download File View File

Coxsackievirus A9 bound with compound 16 (CL298)

Plavec, Z., Butcher, S.J., Mitchell, C., Buckner, C.

(2024) J Med Chem 67: 17144-17161

Released	2024-10-02
Method	ELECTRON MICROSCOPY 2.75 Å
Organisms	Human coxsackievirus A9 (strain Griggs)
Macromolecule	Capsid protein VP1 (protein) Capsid protein VP2 (protein) Capsid protein VP3 (protein) Capsid protein VP4 (protein)
Unique Ligands	A1IBS

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9FCZ \| pdb_00009fcz	Download File View File

Coxsackievirus A9 bound with compound 17 (CL301)

Plavec, Z., Butcher, S.J., Mitchell, C., Buckner, C.

(2024) J Med Chem 67: 17144-17161

Released	2024-10-02
Method	ELECTRON MICROSCOPY 2.53 Å
Organisms	Human coxsackievirus A9 (strain Griggs)
Macromolecule	Capsid protein VP1 (protein) Capsid protein VP2 (protein) Capsid protein VP3 (protein) Capsid protein VP4 (protein)
Unique Ligands	A1IB2, MYR

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9FGN \| pdb_00009fgn	Download File View File

Coxsackievirus A9 bound with compound 18 (CL304)

Plavec, Z., Butcher, S.J., Mitchell, C., Buckner, C.

(2024) J Med Chem 67: 17144-17161

Released	2024-10-02
Method	ELECTRON MICROSCOPY 2.64 Å
Organisms	Coxsackievirus A9
Macromolecule	Capsid protein VP1 (protein) Capsid protein VP2 (protein) Capsid protein VP3 (protein) Capsid protein VP4 (protein)
Unique Ligands	A1ICH

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9FO2 \| pdb_00009fo2	Download File View File

Coxsackievirus A9 bound with compound 15 (CL278)

Plavec, Z., Butcher, S.J., Mitchell, C., Buckner, C.

(2024) J Med Chem 67: 17144-17161

Released	2024-10-02
Method	ELECTRON MICROSCOPY 2.58 Å
Organisms	Human coxsackievirus A9 (strain Griggs)
Macromolecule	Capsid protein VP1 (protein) Capsid protein VP2 (protein) Capsid protein VP3 (protein) Capsid protein VP4 (protein)
Unique Ligands	A1IEI, MYR

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9FO5 \| pdb_00009fo5	Download File View File

Coxsackievirus A9 bound with compound 19 (CL313)

Plavec, Z., Butcher, S.J., Mitchell, C., Buckner, C.

(2024) J Med Chem 67: 17144-17161

Released	2024-10-02
Method	ELECTRON MICROSCOPY 2.69 Å
Organisms	Human coxsackievirus A9 (strain Griggs)
Macromolecule	Capsid protein VP1 (protein) Capsid protein VP2 (protein) Capsid protein VP3 (protein) Capsid protein VP4 (protein)
Unique Ligands	A1IEH

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9FP5 \| pdb_00009fp5	Download File View File

Coxsackievirus A9 bound with CL213.

Plavec, Z., Butcher, S.J., Mitchell, C., Buckner, C.

(2024) J Med Chem 67: 17144-17161

Released	2024-10-02
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Coxsackievirus A9
Macromolecule	Capsid protein VP1 (protein) Capsid protein VP2 (protein) Capsid protein VP3 (protein) Capsid protein VP4 (protein)
Unique Ligands	MYR, PLM

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1D4M | pdb_00001d4m

THE CRYSTAL STRUCTURE OF COXSACKIEVIRUS A9 TO 2.9 A RESOLUTION

3J2J | pdb_00003j2j

Empty coxsackievirus A9 capsid

8AT5 | pdb_00008at5

native Coxsackievirus A9

8AW6 | pdb_00008aw6

Expanded Coxsackievirus A9 after 0.01% faf-BSA treatment

8AXX | pdb_00008axx

Expanded Coxsackievirus A9 after treatment with endosomal ionic buffer

8S7J | pdb_00008s7j

Coxsackievirus A9 bound with compound 20 (CL300)

9EXI | pdb_00009exi

Coxsackievirus A9 bound with compound 14 (CL275)

9FA9 | pdb_00009fa9

Coxsackievirus A9 bound with compound 16 (CL298)

9FCZ | pdb_00009fcz

Coxsackievirus A9 bound with compound 17 (CL301)

9FGN | pdb_00009fgn

Coxsackievirus A9 bound with compound 18 (CL304)

9FO2 | pdb_00009fo2

Coxsackievirus A9 bound with compound 15 (CL278)

9FO5 | pdb_00009fo5

Coxsackievirus A9 bound with compound 19 (CL313)

9FP5 | pdb_00009fp5

Coxsackievirus A9 bound with CL213.

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

1D4M | pdb_00001d4m

3J2J | pdb_00003j2j

8AT5 | pdb_00008at5

8AW6 | pdb_00008aw6

8AXX | pdb_00008axx

8S7J | pdb_00008s7j

9EXI | pdb_00009exi

9FA9 | pdb_00009fa9

9FCZ | pdb_00009fcz

9FGN | pdb_00009fgn

9FO2 | pdb_00009fo2

9FO5 | pdb_00009fo5

9FP5 | pdb_00009fp5