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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Dermatophagoides farinae"

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Dermatophagoides farinae (15)
	synthetic construct (3)
	Mus musculus (1)

Taxonomy

	Eukaryota (15)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (11)
	SOLUTION NMR (4)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (3)
	2.0 - 2.5 (5)
	2.5 - 3.0 (2)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (1)
	2005 - 2009 (3)
	2010 - 2014 (1)
	2015 - 2019 (5)
	2020 - 2024 (3)

Enzyme Classification Name

Hydrolases (2)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (12)
	Cyclic (3)

SCOP Classification

	All beta proteins (7)
	Artifacts (1)

AllSelected

1 to 15 of 15 Structures

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1AHK \| pdb_00001ahk	Download File View File

DER F 2, THE MAJOR MITE ALLERGEN FROM DERMATOPHAGOIDES FARINAE, NMR, MINIMIZED AVERAGE STRUCTURE

Ichikawa, S., Hatanaka, H., Yuuki, T., Iwamoto, N., Ogura, K., Okumura, Y., Inagaki, F.

(1998) J Biological Chem 273: 356-360

Released	1998-04-08
Method	SOLUTION NMR
Organisms	Dermatophagoides farinae
Macromolecule	DER F 2 (protein)

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1AHM \| pdb_00001ahm	Download File View File

DER F 2, THE MAJOR MITE ALLERGEN FROM DERMATOPHAGOIDES FARINAE, NMR, 10 STRUCTURES

Ichikawa, S., Hatanaka, H., Yuuki, T., Iwamoto, N., Ogura, K., Okumura, Y., Inagaki, F.

(1998) J Biological Chem 273: 356-360

Released	1998-04-08
Method	SOLUTION NMR
Organisms	Dermatophagoides farinae
Macromolecule	DER F 2 (protein)

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1WRF \| pdb_00001wrf	Download File View File

Refined solution structure of Der f 2, The Major Mite Allergen from Dermatophagoides farinae

Ichikawa, S., Takai, T., Inoue, T., Yuuki, T., Okumura, Y., Ogura, K., Inagaki, F., Hatanaka, H.

(2005) J Biochem 137: 255-263

Released	2005-04-19
Method	SOLUTION NMR
Organisms	Dermatophagoides farinae
Macromolecule	Mite group 2 allergen Der f 2 (protein)

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1XWV \| pdb_00001xwv	Download File View File

Structure of the house dust mite allergen Der f 2: Implications for function and molecular basis of IgE cross-reactivity

Johannessen, B.R., Skov, L.K., Kastrup, J.S., Kristensen, O., Bolwig, C., Larsen, J.N., Spangfort, M., Lund, K., Gajhede, M.

(2005) FEBS Lett 579: 1208-1212

Released	2004-12-14
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Dermatophagoides farinae
Macromolecule	Der f II (protein)
Unique Ligands	PE3, XPE

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2A0A \| pdb_00002a0a	Download File View File

Solution Structure of Der f 13, Group 13 Allergen from House Dust Mites

Chan, S.L., Mok, Y.K.

(2006) J Immunol 176: 4852-4860

Released	2006-04-11
Method	SOLUTION NMR
Organisms	Dermatophagoides farinae
Macromolecule	Der f 13 (protein)

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2F08 \| pdb_00002f08	Download File View File

Crystal structure of a major house dust mite allergen, Derf 2

Mikami, B., Tanaka, Y., Minato, N., Suzuki, M., Korematsu, S.

(2006) Biochem Biophys Res Commun 339: 679-686

Released	2005-11-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Dermatophagoides farinae
Macromolecule	mite allergen Der f II (protein)
Unique Ligands	P4C

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3UV1 \| pdb_00003uv1	Download File View File

Crystal structure a major allergen from dust mite

Tan, K.W., Kumar, T., Chew, F.T., Mok, Y.K.

(2012) PLoS One 7: e44850-e44850

Released	2012-10-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Dermatophagoides farinae
Macromolecule	Der f 7 allergen (protein)

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5VPK \| pdb_00005vpk	Download File View File

CRYSTAL STRUCTURE OF MITE ALLERGEN DER F 1

Chruszcz, M., Chapman, M.D., Vailes, L.D., Pomes, A., Minor, W.

(2009) J Mol Biology 386: 520

Released	2017-05-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Dermatophagoides farinae
Macromolecule	Der f 1 variant (protein)
Unique Ligands	NAG, SO4

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5VPL \| pdb_00005vpl	Download File View File

CRYSTAL STRUCTURE OF DER F 1 COMPLEXED WITH FAB 4C1

Chruszcz, M., Vailes, L.D., Chapman, M.D., Pomes, A., Minor, W.

(2012) J Biological Chem 287: 7388

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Dermatophagoides farinae Mus musculus
Macromolecule	4C1 - HEAVY CHAIN (protein) 4C1 - LIGHT CHAIN (protein) Der f 1 variant (protein)
Unique Ligands	CA, EDO, NAG

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5YNX \| pdb_00005ynx	Download File View File

Structure of house dust mite allergen Der f 21 in PEG400

Ng, C.L., Chew, F.T., Pang, S.L., Ho, K.L., Teh, A.H., Waterman, J., Rambo, R., Mathavan, I., Beis, K., Say, Y.H.

(2019) Sci Rep 9: 4933-4933

Released	2019-03-13
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Dermatophagoides farinae
Macromolecule	Allergen Der f 21 (protein)
Unique Ligands	1PE, BME, GOL

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5YNY \| pdb_00005yny	Download File View File

Structure of house dust mite allergen Der F 21 in PEG2KMME

Ng, C.L., Chew, F.T., Pang, S.L., Ho, K.L., Teh, A.H., Waterman, J., Rambo, R., Mathavan, I.

(2019) Sci Rep 9: 4933-4933

Released	2019-03-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Dermatophagoides farinae
Macromolecule	Allergen Der f 21 (protein)

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5ZJL \| pdb_00005zjl	Download File View File

Crystal Structure of the dust mite allergen Der f 23 from Dermatophagoides farinae

Ji, K., Chen, J., Sun, J.L., Hu, J., Cai, Z.

To be published

Released	2018-05-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Dermatophagoides farinae
Macromolecule	Der f 23 allergen (protein)

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9HAD \| pdb_00009had	Download File View File

Der f 21 dust mite allergen with computationally designed DerF21_b10 binder

Pacesa, M., Nickel, L., Correia, B.E.

(2024) bioRxiv

Released	2024-12-18
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Dermatophagoides farinae synthetic construct
Macromolecule	DerF21_binder10 (protein) Mite allergen Der f 21.0101 (protein)

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9HAE \| pdb_00009hae	Download File View File

Dust mite allergen Der f 7 with computationally designed DerF7_b2 binder

Pacesa, M., Nickel, L., Correia, B.E.

(2024) bioRxiv

Released	2024-12-18
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Dermatophagoides farinae synthetic construct
Macromolecule	DerF7_binder2 (protein) Mite allergen Der f 7 (protein)
Unique Ligands	NA

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9HAF \| pdb_00009haf	Download File View File

Dust mite allergen Der f 7 with computationally designed DerF7_b2 binder

Pacesa, M., Nickel, L., Correia, B.E.

(2024) bioRxiv

Released	2024-12-18
Method	X-RAY DIFFRACTION 2.99 Å
Organisms	Dermatophagoides farinae synthetic construct
Macromolecule	DerF7_binder2 (protein) Mite allergen Der f 7 (protein)

1 to 15 of 15 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1AHK | pdb_00001ahk

DER F 2, THE MAJOR MITE ALLERGEN FROM DERMATOPHAGOIDES FARINAE, NMR, MINIMIZED AVERAGE STRUCTURE

1AHM | pdb_00001ahm

DER F 2, THE MAJOR MITE ALLERGEN FROM DERMATOPHAGOIDES FARINAE, NMR, 10 STRUCTURES

1WRF | pdb_00001wrf

Refined solution structure of Der f 2, The Major Mite Allergen from Dermatophagoides farinae

1XWV | pdb_00001xwv

Structure of the house dust mite allergen Der f 2: Implications for function and molecular basis of IgE cross-reactivity

2A0A | pdb_00002a0a

Solution Structure of Der f 13, Group 13 Allergen from House Dust Mites

2F08 | pdb_00002f08

Crystal structure of a major house dust mite allergen, Derf 2

3UV1 | pdb_00003uv1

Crystal structure a major allergen from dust mite

5VPK | pdb_00005vpk

CRYSTAL STRUCTURE OF MITE ALLERGEN DER F 1

5VPL | pdb_00005vpl

CRYSTAL STRUCTURE OF DER F 1 COMPLEXED WITH FAB 4C1

5YNX | pdb_00005ynx

Structure of house dust mite allergen Der f 21 in PEG400

5YNY | pdb_00005yny

Structure of house dust mite allergen Der F 21 in PEG2KMME

5ZJL | pdb_00005zjl

Crystal Structure of the dust mite allergen Der f 23 from Dermatophagoides farinae

9HAD | pdb_00009had

Der f 21 dust mite allergen with computationally designed DerF21_b10 binder

9HAE | pdb_00009hae

Dust mite allergen Der f 7 with computationally designed DerF7_b2 binder

9HAF | pdb_00009haf

Dust mite allergen Der f 7 with computationally designed DerF7_b2 binder

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AHK | pdb_00001ahk

1AHM | pdb_00001ahm

1WRF | pdb_00001wrf

1XWV | pdb_00001xwv

2A0A | pdb_00002a0a

2F08 | pdb_00002f08

3UV1 | pdb_00003uv1

5VPK | pdb_00005vpk

5VPL | pdb_00005vpl

5YNX | pdb_00005ynx

5YNY | pdb_00005yny

5ZJL | pdb_00005zjl

9HAD | pdb_00009had

9HAE | pdb_00009hae

9HAF | pdb_00009haf