RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Escherichia coli O157:H7"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 347 Structures.

Refinements

Structure Determination Methodology

experimental (347)

Scientific Name of Source Organism

	Escherichia coli O157:H7 (313)
	Homo sapiens (45)
	Escherichia coli K-12 (23)
	Escherichia coli (21)
	synthetic construct (19)
	Escherichia coli O157:H7 str. EDL933 (14)
	Qubevirus durum (11)
	Escherichia coli O157:H7 str. TW14359 (6)
	Escherichia coli S88 (6)
	Danio rerio (5)

More...

Taxonomy

	Bacteria (347)
	Eukaryota (67)
	other sequences (19)
	Riboviria (13)
	Duplodnaviria (6)
	Archaea (1)
	Monodnaviria (1)
	unclassified bacterial viruses (1)

Experimental Method

	X-RAY DIFFRACTION (284)
	ELECTRON MICROSCOPY (32)
	SOLUTION NMR (31)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (347)
	RNA (29)
	DNA (17)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (71)
	2.0 - 2.5 (104)
	2.5 - 3.0 (68)
	3.0 - 3.5 (32)
	3.5 - 4.0 (21)
	4.0 - 4.5 (3)
	> 4.5 (12)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (22)
	2005 - 2009 (48)
	2010 - 2014 (94)
	2015 - 2019 (133)
	2020 - 2024 (46)
	2025 - 2029 (3)

Enzyme Classification Name

	Transferases (97)
	Hydrolases (63)
	Isomerases (14)
	Oxidoreductases (15)
	Lyases (13)
	Ligases (9)
	Translocases (4)

Membrane Protein Annotation

	PDBTM (33)
	mpstruc (36)
	OPM (23)
	MemProtMD (24)

Symmetry Type

	Asymmetric (211)
	Cyclic (121)
	Dihedral (33)
	Tetrahedral (2)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (64)
	Alpha and beta proteins (a+b) (44)
	All beta proteins (19)
	Artifacts (19)
	All alpha proteins (12)
	Membrane and cell surface proteins and peptides (4)
	Multi-domain proteins (alpha and beta) (5)

AllSelected

1 to 25 of 347 Structures

Page 1 of 14

Sort by

Explore in 3D

1K3E \| pdb_00001k3e	Download File View File

Type III secretion chaperone CesT

Luo, Y., Bertero, M., Frey, E.A., Pfuetzner, R.A., Wenk, M.R., Creagh, L., Marcus, S.L., Lim, D., Finlay, B.B., Strynadka, N.C.J.

(2001) Nat Struct Biol 8: 1031-1036

Released	2001-11-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli O157:H7
Macromolecule	CesT (protein)

Explore in 3D

1N91 \| pdb_00001n91	Download File View File

Solution NMR Structure of Protein yggU from Escherichia coli. Northeast Structural Genomics Consortium Target ER14.

Aramini, J.M., Xiao, R., Huang, Y.J., Acton, T.B., Wu, M.J., Mills, J.L., Tejero, R.T., Szyperski, T., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)

(2003) J Biomol NMR 27: 285-286

Released	2003-01-14
Method	SOLUTION NMR
Organisms	Escherichia coli O157:H7 str. EDL933
Macromolecule	orf, hypothetical protein (protein)

Explore in 3D

1NCE \| pdb_00001nce	Download File View File

Crystal structure of a ternary complex of E. coli thymidylate synthase D169C with dUMP and the antifolate CB3717

Birdsall, D.L., Finer-Moore, J., Stroud, R.M.

(2003) Protein Eng 16: 229-240

Released	2002-12-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli Escherichia coli O157:H7
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	CB3, UMP

Explore in 3D

1NMO \| pdb_00001nmo	Download File View File

Structural genomics, protein ybgI, unknown function

Ladner, J.E., Obmolova, G., Teplyakov, A., Khil, P.P., Camerini-Otero, R.D., Gilliland, G.L., Structure 2 Function Project (S2F)

(2003) BMC Struct Biol 3: 7

Released	2004-01-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli Escherichia coli O157:H7
Macromolecule	Hypothetical protein ybgI (protein)
Unique Ligands	FE

Explore in 3D

1NMP \| pdb_00001nmp	Download File View File

Structural genomics, ybgI protein, unknown function

Ladner, J.E., Obmolova, G., Teplyakov, A., Khil, P.P., Camerini-Otero, R.D., Gilliland, G.L., Structure 2 Function Project (S2F)

(2003) BMC Struct Biol 3: 7

Released	2004-01-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli Escherichia coli O157:H7
Macromolecule	Hypothetical protein ybgI (protein)
Unique Ligands	MG

Explore in 3D

1OX8 \| pdb_00001ox8	Download File View File

Crystal structure of SspB

Song, H.K., Eck, M.J.

(2003) Mol Cell 12: 75-86

Released	2003-08-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Stringent starvation protein B (protein)

Explore in 3D

1OX9 \| pdb_00001ox9	Download File View File

Crystal structure of SspB-ssrA complex

Song, H.K., Eck, M.J.

(2003) Mol Cell 12: 75-86

Released	2003-08-26
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Stringent starvation protein B (protein) ssrA (protein)

Explore in 3D

1P89 \| pdb_00001p89	Download File View File

Substrate-induced Structural Changes to the Isolated N-Terminal Domain of 5-Enolpyruvylshikimate-3-phosphate Synthase

Young, J.K., Stauffer, M.E., Kim, H.J., Helms, G.L., Evans, J.N.S.

To be published

Released	2004-11-02
Method	SOLUTION NMR
Organisms	Escherichia coli O157:H7
Macromolecule	3-phosphoshikimate 1-carboxyvinyltransferase (protein)

Explore in 3D

1PK7 \| pdb_00001pk7	Download File View File

Crystal Structure of E. coli purine nucleoside phosphorylase complexed with adenosine and sulfate/phosphate

Bennett, E.M., Li, C., Allan, P.W., Parker, W.B., Ealick, S.E.

(2003) J Biological Chem 278: 47110-47118

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Purine nucleoside phosphorylase DeoD-type (protein)
Unique Ligands	ADN, PO4

Explore in 3D

1PK9 \| pdb_00001pk9	Download File View File

Crystal Structure of E. coli purine nucleoside phosphorylase complexed with 2-fluoroadenosine and sulfate/phosphate

Bennett, E.M., Li, C., Allan, P.W., Parker, W.B., Ealick, S.E.

(2003) J Biological Chem 278: 47110-47118

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Purine nucleoside phosphorylase DeoD-type (protein)
Unique Ligands	2FA, PO4

Explore in 3D

1PKE \| pdb_00001pke	Download File View File

Crystal Structure of E. coli purine nucleoside phosphorylase complexed with 2-fluoro-2'-deoxyadenosine and sulfate/phosphate

Bennett, E.M., Li, C., Allan, P.W., Parker, W.B., Ealick, S.E.

(2003) J Biological Chem 278: 47110-47118

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Purine nucleoside phosphorylase DeoD-type (protein)
Unique Ligands	2FD, PO4

Explore in 3D

1PR0 \| pdb_00001pr0	Download File View File

Escherichia coli Purine Nucleoside Phosphorylase Complexed with Inosine and Phosphate/Sulfate

Bennett, E.M., Li, C., Allan, P.W., Parker, W.B., Ealick, S.E.

(2003) J Biological Chem 278: 47110-47118

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Purine nucleoside phosphorylase DeoD-type (protein)
Unique Ligands	NOS, PO4

Explore in 3D

1PR2 \| pdb_00001pr2	Download File View File

Escherichia coli Purine Nucleoside Phosphorylase Complexed with 9-beta-D-[2-deoxyribofuranosyl]-6-methylpurine and Phosphate/Sulfate

Bennett, E.M., Li, C., Allan, P.W., Parker, W.B., Ealick, S.E.

(2003) J Biological Chem 278: 47110-47118

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Purine nucleoside phosphorylase DeoD-type (protein)
Unique Ligands	MDR, PO4

Explore in 3D

1PR4 \| pdb_00001pr4	Download File View File

Escherichia coli Purine Nucleoside Phosphorylase Complexed with 9-beta-D-ribofuranosyl-6-methylthiopurine and Phosphate/Sulfate

Bennett, E.M., Li, C., Allan, P.W., Parker, W.B., Ealick, S.E.

(2003) J Biological Chem 278: 47110-47118

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Purine nucleoside phosphorylase DeoD-type (protein)
Unique Ligands	MTP, PO4

Explore in 3D

1PR5 \| pdb_00001pr5	Download File View File

Escherichia coli Purine Nucleoside Phosphorylase Complexed with 7-deazaadenosine and Phosphate/Sulfate

Bennett, E.M., Li, C., Allan, P.W., Parker, W.B., Ealick, S.E.

(2003) J Biological Chem 278: 47110-47118

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Purine nucleoside phosphorylase DeoD-type (protein)
Unique Ligands	PO4, TBN

Explore in 3D

1PR6 \| pdb_00001pr6	Download File View File

Escherichia coli Purine Nucleoside Phosphorylase Complexed with 9-beta-D-xylofuranosyladenine and Phosphate/Sulfate

Bennett, E.M., Li, C., Allan, P.W., Parker, W.B., Ealick, S.E.

(2003) J Biological Chem 278: 47110-47118

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Purine nucleoside phosphorylase DeoD-type (protein)
Unique Ligands	PO4, XYA

Explore in 3D

1PW7 \| pdb_00001pw7	Download File View File

Crystal Structure of E. coli purine nucleoside phosphorylase complexed with 9-beta-D-arabinofuranosyladenine and sulfate/phosphate

Bennett, E.M., Li, C., Allan, P.W., Parker, W.B., Ealick, S.E.

(2003) J Biological Chem 278: 47110-47118

Released	2003-11-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Purine nucleoside phosphorylase DeoD-type (protein)
Unique Ligands	PO4, RAB

Explore in 3D

1QNU \| pdb_00001qnu	Download File View File

Shiga-Like Toxin I B Subunit Complexed with the Bridged-Starfish Inhibitor

Pannu, N.S., Hayakawa, K., Read, R.J.

(2000) Nature 403: 669-672

Released	2000-04-11
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Shiga toxin 1 variant B subunit (protein)
Unique Ligands	EMB, MEC
Unique branched monosaccharides	GAL, GLC

Explore in 3D

1RP7 \| pdb_00001rp7	Download File View File

E. COLI PYRUVATE DEHYDROGENASE INHIBITOR COMPLEX

Arjunan, P., Chandrasekhar, K., Furey, W.

(2004) Biochemistry 43: 2405-2411

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Escherichia coli Escherichia coli O157:H7
Macromolecule	Pyruvate dehydrogenase E1 component (protein)
Unique Ligands	MG, TZD

Explore in 3D

1RQS \| pdb_00001rqs	Download File View File

NMR structure of C-terminal domain of ribosomal protein L7 from E.coli

Bocharov, E.V., Sobol, A.G., Pavlov, K.V., Korzhnev, D.M., Jaravine, V.A., Gudkov, A.T., Arseniev, A.S.

(2004) J Biological Chem 279: 17697-17706

Released	2004-03-02
Method	SOLUTION NMR
Organisms	Escherichia coli Escherichia coli O157:H7 Escherichia coli O6 Shigella flexneri
Macromolecule	50S ribosomal protein L7/L12 (protein)

Explore in 3D

1SBZ \| pdb_00001sbz	Download File View File

Crystal Structure of dodecameric FMN-dependent Ubix-like Decarboxylase from Escherichia coli O157:H7

Rangarajan, E.S., Li, Y., Iannuzzi, P., Tocilj, A., Hung, L.-W., Matte, A., Cygler, M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2004) Protein Sci 13: 3006-3016

Released	2004-10-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Probable aromatic acid decarboxylase (protein)
Unique Ligands	FMN

Explore in 3D

1T7P \| pdb_00001t7p	Download File View File

T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXIN

Doublie, S., Tabor, S., Long, A.M., Richardson, C.C., Ellenberger, T.

(1998) Nature 391: 251-258

Released	1998-02-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli O157:H7 Escherichia phage T7
Macromolecule	DNA-directed DNA polymerase (protein) Thioredoxin 1 (protein) DNA (5'-D(PCPCPTPTPGPGPCPAPCPTPGPGPC)-3') (nucleic acid) DNA (5'-D(PGPCPCPAPGPTPGPCPCPAP2DA)-3') (nucleic acid)
Unique Ligands	DG3, MG

Explore in 3D

1TI1 \| pdb_00001ti1	Download File View File

crystal structure of a mutant DsbA

Kone, A., Serre, L.

(2005) J Mol Biology 347: 555-563

Released	2005-05-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Thiol:disulfide interchange protein dsbA (protein)
Unique Ligands	D12

Explore in 3D

1U9T \| pdb_00001u9t	Download File View File

Crystal Structure Analysis of ChuS, an E. coli Heme Oxygenase

Suits, M.D., Jia, Z., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2005) Proc Natl Acad Sci U S A 102: 16955-16960

Released	2005-10-25
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Escherichia coli O157:H7 str. EDL933
Macromolecule	putative heme/hemoglobin transport protein (protein)