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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Hepatitis B virus"

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Search Summary

This query matches 109 Structures.

Refinements

Structure Determination Methodology

experimental (109)

Scientific Name of Source Organism

	Hepatitis B virus (58)
	Homo sapiens (22)
	Hepatitis B virus subtype adyw (18)
	Hepatitis B virus ayw/France/Tiollais/1979 (16)
	synthetic construct (8)
	Mus musculus (6)
	hepatitis B virus genotype C (4)
	Hepatitis B virus adr4 (3)
	Hepatitis B virus genotype A1 subtype adw2 (isolate South Africa/84/2001) (3)
	Oryctolagus cuniculus (3)

More...

Taxonomy

	Riboviria (104)
	Eukaryota (31)
	other sequences (8)
	Bacteria (5)
	Riboviria (RNA viruses and viroids) (5)

Experimental Method

	ELECTRON MICROSCOPY (57)
	X-RAY DIFFRACTION (47)
	SOLUTION NMR (5)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (106)
	RNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (11)
	2.0 - 2.5 (10)
	2.5 - 3.0 (31)
	3.0 - 3.5 (26)
	3.5 - 4.0 (14)
	4.0 - 4.5 (6)
	> 4.5 (6)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (1)
	2000 - 2004 (3)
	2005 - 2009 (8)
	2010 - 2014 (11)
	2015 - 2019 (20)
	2020 - 2024 (64)
	2025 - 2029 (1)

Enzyme Classification Name

Hydrolases (1)

Membrane Protein Annotation

	PDBTM (3)
	MemProtMD (1)
	OPM (1)

Symmetry Type

	Asymmetric (38)
	Icosahedral (41)
	Cyclic (26)
	Dihedral (1)

SCOP Classification

	All alpha proteins (15)
	Artifacts (10)
	All beta proteins (10)
	Membrane and cell surface proteins and peptides (1)
	Alpha and beta proteins (a+b) (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 109 Structures

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1HHH \| pdb_00001hhh	Download File View File

THE ANTIGENIC IDENTITY OF PEPTIDE(SLASH)MHC COMPLEXES: A COMPARISON OF THE CONFORMATION OF FIVE PEPTIDES PRESENTED BY HLA-A2

Madden, D.R., Garboczi, D.N., Wiley, D.C.

(1993) Cell 75: 693-708

Released	1993-10-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Hepatitis B virus Homo sapiens
Macromolecule	BETA 2-MICROGLOBULIN (protein) CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A*0201) (ALPHA CHAIN) (protein) HEPATITIS B NUCLEOCAPSID PROTEIN (RESIDUES 18-27) (protein)

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1KC5 \| pdb_00001kc5	Download File View File

CRYSTAL STRUCTURE OF ANTIBODY PC287 IN COMPLEX WITH PS1 PEPTIDE

Nair, D.T., Singh, K., Siddiqui, Z., Nayak, B.P., Rao, K.V., Salunke, D.M.

(2002) J Immunol 168: 2371-2382

Released	2002-07-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Hepatitis B virus genotype A1 subtype adw2 (isolate South Africa/84/2001) Mus musculus
Macromolecule	PC287 Immunoglobulin (protein) PS1 peptide (protein)

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1KCR \| pdb_00001kcr	Download File View File

CRYSTAL STRUCTURE OF ANTIBODY PC283 IN COMPLEX WITH PS1 PEPTIDE

Nair, D.T., Singh, K., Sahu, N., Rao, K.V.S., Salunke, D.M.

(2000) J Immunol 165: 6949-6955

Released	2002-05-11
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Hepatitis B virus genotype A1 subtype adw2 (isolate South Africa/84/2001) Mus musculus
Macromolecule	PC283 IMMUNOGLOBULIN (protein) PS1 peptide (protein)

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1KCS \| pdb_00001kcs	Download File View File

CRYSTAL STRUCTURE OF ANTIBODY PC282 IN COMPLEX WITH PS1 PEPTIDE

Nair, D.T., Singh, K., Siddiqui, Z., Nayak, B.P., Rao, K.V.S., Salunke, D.M.

(2002) J Immunol 168: 2371-2382

Released	2002-05-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Hepatitis B virus genotype A1 subtype adw2 (isolate South Africa/84/2001) Mus musculus
Macromolecule	PC282 IMMUNOGLOBULIN (protein) PS1 peptide (protein)

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1QGT \| pdb_00001qgt	Download File View File

HUMAN HEPATITIS B VIRAL CAPSID (HBCAG)

Leslie, A.G.W., Wynne, S.A., Crowther, R.A.

(1999) Mol Cell 3: 771-780

Released	1999-06-25
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Hepatitis B virus
Macromolecule	PROTEIN (HBV CAPSID PROTEIN) (protein)

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1WZ4 \| pdb_00001wz4	Download File View File

Solution Conformation of adr subtype HBV Pre-S2 Epitope

Chi, S.W., Han, K.H.

(2006) Antiviral Res 72: 207-215

Released	2006-05-16
Method	SOLUTION NMR
Organisms	Hepatitis B virus genotype C subtype ad (isolate Japan/S-179/1988)
Macromolecule	Major surface antigen (protein)

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2EH8 \| pdb_00002eh8	Download File View File

Crystal structure of the complex of humanized KR127 fab and PRES1 peptide epitope

Chi, S.-W., Kim, S.-J., Maeng, C.-Y., Hong, H.J., Ryu, S.-E.

(2007) Proc Natl Acad Sci U S A 104: 9230-9235

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Hepatitis B virus Mus musculus
Macromolecule	HUMANIZED KR127 FAB, HEAVY CHAIN (protein) HUMANIZED KR127 FAB, LIGHT CHAIN (protein) PreS1/PreS2/surface protein (protein)

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2G33 \| pdb_00002g33	Download File View File

Human Hepatitis B Virus T=4 capsid, strain adyw

Bourne, C.R., Zlotnick, A.

(2006) J Virol 80: 11055-11061

Released	2006-11-14
Method	X-RAY DIFFRACTION 3.96 Å
Organisms	Hepatitis B virus subtype adyw
Macromolecule	Core antigen (protein)

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2G34 \| pdb_00002g34	Download File View File

Human hepatitis B virus T=4 capsid strain adyw complexed with assembly effector HAP1

Bourne, C.R., Zlotnick, A.

(2006) J Virol 80: 11055-11061

Released	2006-11-14
Method	X-RAY DIFFRACTION 5.053 Å
Organisms	Hepatitis B virus subtype adyw
Macromolecule	Core antigen (protein)

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2IXY \| pdb_00002ixy	Download File View File

Solution structure of the apical stem-loop of the human hepatitis B virus encapsidation signal

Flodell, S., Petersen, M., Girard, F., Zdunek, J., Kidd-Ljunggren, K., Schleucher, J., Wijmenga, S.S.

(2006) Nucleic Acids Res 34: 4449-4457

Released	2006-09-06
Method	SOLUTION NMR
Organisms	Hepatitis B virus
Macromolecule	5'-R(GPGPCPCPUPCPCPAPAPGP CPUPGPUPGPCPCPUPUPGPGPGPUPGPGPCP*C)-3' (nucleic acid)

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2IXZ \| pdb_00002ixz	Download File View File

Solution structure of the apical stem-loop of the human hepatitis B virus encapsidation signal

Flodell, S., Petersen, M., Girard, F., Zdunek, J., Kidd-Ljunggren, K., Schleucher, J., Wijmenga, S.S.

(2006) Nucleic Acids Res 34: 4449-4457

Released	2006-09-06
Method	SOLUTION NMR
Organisms	Hepatitis B virus
Macromolecule	5'-R(GPCPUPGPUPGPCPCP)-3' (nucleic acid)

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2QIJ \| pdb_00002qij	Download File View File

Hepatitis B Capsid Protein with an N-terminal extension modelled into 8.9 A data.

Tan, W.S., McNae, I.W., Ho, K.L., Walkinshaw, M.D.

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 642-647

Released	2007-12-11
Method	X-RAY DIFFRACTION 8.9 Å
Organisms	Hepatitis B virus subtype adyw
Macromolecule	Core antigen (protein)

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3I7H \| pdb_00003i7h	Download File View File

Crystal Structure of DDB1 in Complex with the H-Box Motif of HBX

Li, T., Robert, E.I., Breugel, P.C.V., Strubin, M., Zheng, N.

(2010) Nat Struct Mol Biol 17: 105-111

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Hepatitis B virus Homo sapiens
Macromolecule	DNA damage-binding protein 1 (protein) X protein (protein)

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3J2V \| pdb_00003j2v	Download File View File

CryoEM structure of HBV core

Yu, X., Jin, L., Jih, J., Shih, C., Zhou, Z.H.

(2013) PLoS One 8: e69729-e69729

Released	2013-10-02
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Hepatitis B virus
Macromolecule	PreC/core protein (protein)

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3KXS \| pdb_00003kxs	Download File View File

Crystal structure of HBV capsid mutant dimer (oxy form), strain adyw

Packianathan, C., Katen, S.P., Zlotnick, A.

(2010) J Virol 84: 1607-1615

Released	2010-02-02
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Hepatitis B virus subtype adyw
Macromolecule	Capsid protein (protein)

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3OX8 \| pdb_00003ox8	Download File View File

Crystal Structure of HLA A*02:03 Bound to HBV Core 18-27

Liu, J., Chen, Y., Lai, L., Ren, E.

(2011) Eur J Immunol 41: 2097-2106

Released	2011-05-04
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Hepatitis B virus Homo sapiens
Macromolecule	10mer peptide from Pre-core-protein (protein) Beta-2-microglobulin (protein) MHC class I antigen (protein)

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3OXR \| pdb_00003oxr	Download File View File

Crystal Structure of HLA A*02:06 Bound to HBV Core 18-27

Liu, J., Chen, Y., Lai, L., Ren, E.

(2011) Eur J Immunol 41: 2097-2106

Released	2011-05-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Hepatitis B virus Homo sapiens
Macromolecule	10mer peptide from Pre-core-protein (protein) Beta-2-microglobulin (protein) MHC class I antigen (protein)

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3OXS \| pdb_00003oxs	Download File View File

Crystal Structure of HLA A*02:07 Bound to HBV Core 18-27

Liu, J., Chen, Y., Lai, L., Ren, E.

(2011) Eur J Immunol 41: 2097-2106

Released	2011-05-04
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Hepatitis B virus Homo sapiens
Macromolecule	10mer peptide from Pre-core-protein (protein) Beta-2-microglobulin (protein) MHC class I antigen (protein)

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3V6Z \| pdb_00003v6z	Download File View File

Crystal Structure of Hepatitis B Virus e-antigen

Dimattia, M.A., Watts, N.R., Stahl, S.J., Grimes, J.M., Steven, A.C., Stuart, D.I., Wingfield, P.T.

(2013) Structure 21: 133-142

Released	2013-02-06
Method	X-RAY DIFFRACTION 3.34 Å
Organisms	Hepatitis B virus Mus musculus
Macromolecule	Fab e6 Heavy Chain (protein) Fab e6 Light Chain (protein) e-antigen (protein)

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3ZHF \| pdb_00003zhf	Download File View File

gamma 2 adaptin EAR domain crystal structure with preS1 site1 peptide NPDWDFN

Juergens, M.C., Voros, J., Rautureau, G., Shepherd, D., Pye, V.E., Muldoon, J., Johnson, C.M., Ashcroft, A., Freund, S.M.V., Ferguson, N.

(2013) Nat Chem Biol 9: 540

Released	2013-07-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Hepatitis B virus Homo sapiens
Macromolecule	AP-1 COMPLEX SUBUNIT GAMMA-LIKE 2 (protein) LARGE ENVELOPE PROTEIN (protein)
Unique Ligands	EDO, PEG

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4BMG \| pdb_00004bmg	Download File View File

Crystal structure of hexameric HBc149 Y132A

Juergens, M.C., Alexander, C.G., Shepherd, D.A., Ashcroft, A.E., Ferguson, N.

(2013) Proc Natl Acad Sci U S A 110: E2782

Released	2013-07-10
Method	X-RAY DIFFRACTION 3 Å
Organisms	Hepatitis B virus
Macromolecule	CAPSID PROTEIN (protein)

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4G93 \| pdb_00004g93	Download File View File

CRYSTAL STRUCTURE OF THE HUMAN HEPATITIS B VIRUS T = 4 CAPSID, ADYW STRAIN, in COMPLEX WITH THE PHENYLPROPENAMIDE ASSEMBLY ACCELERATOR AT-130

Katen, S.P., Zlotnick, A.

(2013) Structure 21: 1406-1416

Released	2013-07-24
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Hepatitis B virus subtype adyw
Macromolecule	Capsid protein (protein)
Unique Ligands	0YP

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4K7F \| pdb_00004k7f	Download File View File

Newly identified epitope V60 from HBV core protein complexed with HLA-A*0201

Meng, S.D., Zhang, Y., Wu, Y., Qi, J.X.

(2013) J Virol 87: 8075-8084

Released	2013-06-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Hepatitis B virus Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Core protein (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein)

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4TN2 \| pdb_00004tn2	Download File View File

NS5b in complex with lactam-thiophene carboxylic acids

Chopra, R.

(2014) Bioorg Med Chem Lett 24: 3979-3985

Released	2014-09-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Hepatitis B virus
Macromolecule	Genome polyprotein (protein)
Unique Ligands	33J

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5B1Z \| pdb_00005b1z	Download File View File

Crystal structure of Bcl-xL in complex with HBx-BH3 motif

Yuan, Y.A.

To be published

Released	2016-12-28
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Hepatitis B virus Homo sapiens
Macromolecule	Bcl-2-like protein 1 (protein) Peptide from Protein X (protein)

1 to 25 of 109 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1HHH | pdb_00001hhh

1KC5 | pdb_00001kc5

1KCR | pdb_00001kcr

1KCS | pdb_00001kcs

1QGT | pdb_00001qgt

1WZ4 | pdb_00001wz4

2EH8 | pdb_00002eh8

2G33 | pdb_00002g33

2G34 | pdb_00002g34

2IXY | pdb_00002ixy

2IXZ | pdb_00002ixz

2QIJ | pdb_00002qij

3I7H | pdb_00003i7h

3J2V | pdb_00003j2v

3KXS | pdb_00003kxs

3OX8 | pdb_00003ox8

3OXR | pdb_00003oxr

3OXS | pdb_00003oxs

3V6Z | pdb_00003v6z

3ZHF | pdb_00003zhf

4BMG | pdb_00004bmg

4G93 | pdb_00004g93

4K7F | pdb_00004k7f

4TN2 | pdb_00004tn2

5B1Z | pdb_00005b1z