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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Kluyveromyces lactis NRRL Y-1140"

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Search Summary

This query matches 74 Structures.

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Structure Determination Methodology

experimental (74)

Scientific Name of Source Organism

	Kluyveromyces lactis NRRL Y-1140 (73)
	Saccharomyces cerevisiae S288C (16)
	Kluyveromyces lactis (11)
	Homo sapiens (2)
	Saccharomyces cerevisiae (2)
	Xenopus laevis (2)
	synthetic construct (2)
	Eremothecium gossypii ATCC 10895 (1)
	Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (1)
	unidentified (1)

Taxonomy

	Eukaryota (74)
	other sequences (2)
	Eukaryota (eukaryotes) (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (57)
	ELECTRON MICROSCOPY (17)

Polymer Entity Type

	Protein (74)
	RNA (14)
	DNA (5)

Refinement Resolution (Å)

	1.5 - 2.0 (10)
	2.0 - 2.5 (19)
	2.5 - 3.0 (10)
	3.0 - 3.5 (13)
	3.5 - 4.0 (12)
	4.0 - 4.5 (4)
	> 4.5 (6)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (16)
	2015 - 2019 (28)
	2020 - 2024 (29)

Enzyme Classification Name

	Hydrolases (19)
	Transferases (15)
	Lyases (2)
	Oxidoreductases (2)
	Ligases (1)

Symmetry Type

	Asymmetric (57)
	Cyclic (21)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (5)
	All alpha proteins (4)
	Alpha and beta proteins (a+b) (1)
	Artifacts (1)

AllSelected

1 to 25 of 74 Structures

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2YFV \| pdb_00002yfv	Download File View File

The heterotrimeric complex of Kluyveromyces lactis Scm3, Cse4 and H4

Cho, U.S., Harrison, S.C.

(2011) Proc Natl Acad Sci U S A 108: 9367

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	HISTONE H3-LIKE CENTROMERIC PROTEIN CSE4 (protein) HISTONE H4 (protein) SCM3 (protein)
Unique Ligands	IOD

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2YFW \| pdb_00002yfw	Download File View File

Heterotetramer structure of Kluyveromyces lactis Cse4,H4

Cho, U.S., Harrison, S.C.

(2011) Proc Natl Acad Sci U S A 108: 9367

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	HISTONE H3-LIKE CENTROMERIC PROTEIN CSE4 (protein) HISTONE H4 (protein)

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3E1K \| pdb_00003e1k	Download File View File

Crystal structure of Kluyveromyces lactis Gal80p in complex with the acidic activation domain of Gal4p

Thoden, J.B., Holden, H.M.

(2008) J Biological Chem 283: 30266-30272

Released	2008-08-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Kluyveromyces lactis Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
Macromolecule	Galactose/lactose metabolism regulatory protein GAL80 (protein) Lactose regulatory protein LAC9 (protein)

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3SQI \| pdb_00003sqi	Download File View File

DNA binding domain of Ndc10

Cho, U.S., Harrison, S.C.

(2011) Nat Struct Mol Biol 19: 48-55

Released	2011-12-07
Method	X-RAY DIFFRACTION 2.8245 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	KLLA0E03807p (protein) DNA (5'-D(PAPAPAPTPTPTPTPAPTPAPAPAPTPTPA)-3') (nucleic acid) DNA (5'-D(PTPTPAPAPTPTPTPAPTPAPAPAPAPTPT)-3') (nucleic acid)

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3T79 \| pdb_00003t79	Download File View File

Ndc10: a platform for inner kinetochore assembly in budding yeast

Cho, U.S., Harrison, S.C.

(2011) Nat Struct Mol Biol 19: 48-55

Released	2011-12-07
Method	X-RAY DIFFRACTION 3.6113 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	KLLA0E03807p (protein) DNA (5'-D(PAPAPAPAPAPTPTPTPTPAPTPAPAPAPT)-3') (nucleic acid) DNA (5'-D(PAPAPAPTPTPTPTPAPTPAPAPAPTPTPA)-3') (nucleic acid) DNA (5'-D(PTPAPAPTPTPTPAPTPAPAPAPAPTPT)-3') (nucleic acid) DNA (5'-D(PTPTPAPAPTPTPTPAPTPAPAPAPAPTP*T)-3') (nucleic acid)

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3VA7 \| pdb_00003va7	Download File View File

Crystal structure of the Kluyveromyces lactis Urea Carboxylase

Fan, C., Xiang, S.

(2012) J Biological Chem 287: 9389-9398

Released	2012-02-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	KLLA0E08119p (protein)
Unique Ligands	BTI, GOL, NA, URE

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3ZXU \| pdb_00003zxu	Download File View File

Crystal structure of the Ctf19-Mcm21 kinetochore heterodimer from yeast

Schmitzberger, F., Harrison, S.C.

(2012) EMBO Rep 13: 216

Released	2012-03-14
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	CTF19 (protein) MCM21 (protein)
Unique Ligands	CA

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4DS7 \| pdb_00004ds7	Download File View File

Crystal structure of yeast calmodulin bound to the C-terminal fragment of spindle pole body protein Spc110

Klenchin, V.A., Rayment, I.

(2017) Mol Biol Cell 28: 3298-3314

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Kluyveromyces lactis NRRL Y-1140 Saccharomyces cerevisiae S288C
Macromolecule	Calmodulin (protein) Spindle pole body component 110 (protein)
Unique Ligands	GOL, SO4, SR

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4E6H \| pdb_00004e6h	Download File View File

CRYSTAL STRUCTURE OF THE HAT domain of k. lactis RNA14

Paulson, A.R., Tong, L.

(2012) RNA 18: 1154-1162

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	mRNA 3'-end-processing protein RNA14 (protein)

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4E85 \| pdb_00004e85	Download File View File

crystal STRUCTURE OF HAT DOMAIN OF RNA14

Paulson, A.R., Tong, L.

(2012) RNA 18: 1154-1162

Released	2012-05-02
Method	X-RAY DIFFRACTION 3 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	mRNA 3'-end-processing protein RNA14 (protein)

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4EBA \| pdb_00004eba	Download File View File

Crystal structure of the Rna14-Rna15 complex

Paulson, A.R., Tong, L.

(2012) RNA 18: 1154-1162

Released	2012-05-02
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	Rna15 (protein) mRNA 3'-end-processing protein RNA14 (protein)

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4EXV \| pdb_00004exv	Download File View File

Structure of Kluyveromyces lactis Hsv2p

Baskaran, S., Hurley, J.H.

(2012) Mol Cell 47: 339-348

Released	2012-07-04
Method	X-RAY DIFFRACTION 3 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	SVP1-like protein 2 (protein)
Unique Ligands	SO4

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4FC8 \| pdb_00004fc8	Download File View File

Crystal structure of transcription regulator protein Rtr1 from Kluyveromyces lactis

Xiang, K., Tong, L.

(2012) Nat Commun 3: 946-946

Released	2012-07-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	transcription protein Rtr1 (protein)
Unique Ligands	ZN

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4GPS \| pdb_00004gps	Download File View File

Crystal Structure of K. lactis Dxo1 (YDR370C)

Chang, J.H., Chiba, K., Tong, L.

(2012) Nat Struct Mol Biol 19: 1011-1017

Released	2012-09-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	KLLA0E02245p (protein)
Unique Ligands	CIT

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4GPU \| pdb_00004gpu	Download File View File

Crystal structure of K. lactis Dxo1 (YDR370C) in complex with manganese

Chang, J.H., Chiba, K., Tong, L.

(2012) Nat Struct Mol Biol 19: 1011-1017

Released	2012-09-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	KLLA0E02245p (protein)
Unique Ligands	MN

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4JAX \| pdb_00004jax	Download File View File

Crystal structure of dimeric KlHxk1 in crystal form X

Kuettner, E.B., Strater, N., Kettner, K., Otto, A., Lilie, H., Golbik, R.P., Kriegel, T.M.

(2013) Biochem Biophys Res Commun 435: 313-318

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	Hexokinase (protein)
Unique Ligands	GOL, PO4

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4M3O \| pdb_00004m3o	Download File View File

Crystal structure of K.lactis Rtr1 NTD

Hsu, P.L., Yang, W., Zheng, N., Varani, G.

(2014) J Mol Biology 426: 2970-2981

Released	2014-07-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	KLLA0F12672p (protein)
Unique Ligands	ZN

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5H2A \| pdb_00005h2a	Download File View File

Crystal structure of Osh1 ANK domain from Kluyveromyces lactis

Im, Y.J., Manik, M.K., Yang, H.S., Tong, J.S.

(2017) Structure 25: 617-629.e3

Released	2017-05-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	KLLA0C04147p (protein)

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5H2D \| pdb_00005h2d	Download File View File

Crystal structure of Osh1 ORD domain in complex with ergosterol

Im, Y.J., Manik, M.K., Yang, H.S., Tong, J.S.

(2017) Structure 25: 617-629.e3

Released	2017-05-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	KLLA0C04147p (protein)
Unique Ligands	ERG, SO4

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5H54 \| pdb_00005h54	Download File View File

Mdm12 from K. lactis 1-239

Kawano, S., Quinbara, S., Endo, T.

(2018) J Cell Biol 217: 959-974

Released	2017-11-08
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	Mitochondrial distribution and morphology protein 12 (protein)

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5H55 \| pdb_00005h55	Download File View File

Mdm12 from K. lactis

Kawano, S., Quinbara, S.

(2018) J Cell Biol 217: 959-974

Released	2017-11-08
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	Mitochondrial distribution and morphology protein 12 (protein)

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5H5A \| pdb_00005h5a	Download File View File

Mdm12 from K. lactis (1-239), Lys residues are uniformly dimethyl modified

Kawano, S., Quinbara, S., Endo, T.

(2018) J Cell Biol 217: 959-974

Released	2017-11-08
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	Mitochondrial distribution and morphology protein 12 (protein)
Unique Ligands	6OU, K

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5H5C \| pdb_00005h5c	Download File View File

Mdm12 from K. lactis (1-239), uniformly Lys dimethyl modified, crystallized in FOS-MEA-10

Kawano, S., Quinbara, S., Endo, T.

(2018) J Cell Biol 217: 959-974

Released	2017-11-08
Method	X-RAY DIFFRACTION 3.31 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	Mitochondrial distribution and morphology protein 12 (protein)

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5I8I \| pdb_00005i8i	Download File View File

Crystal Structure of the K. lactis Urea Amidolyase

Zhao, J., Xiang, S.

(2018) Biosci Rep 38:

Released	2017-04-05
Method	X-RAY DIFFRACTION 6.5 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	Urea Amidolyase (protein)

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5IFK \| pdb_00005ifk	Download File View File

Purine nucleoside phosphorylase

Thakur, K.G., Priyanka, A.

(2016) PLoS One 11: e0164279-e0164279

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.967 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	Purine nucleoside phosphorylase (protein)
Unique Ligands	HPA

1 to 25 of 74 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2YFV | pdb_00002yfv

2YFW | pdb_00002yfw

3E1K | pdb_00003e1k

3SQI | pdb_00003sqi

3T79 | pdb_00003t79

3VA7 | pdb_00003va7

3ZXU | pdb_00003zxu

4DS7 | pdb_00004ds7

4E6H | pdb_00004e6h

4E85 | pdb_00004e85

4EBA | pdb_00004eba

4EXV | pdb_00004exv

4FC8 | pdb_00004fc8

4GPS | pdb_00004gps

4GPU | pdb_00004gpu

4JAX | pdb_00004jax

4M3O | pdb_00004m3o

5H2A | pdb_00005h2a

5H2D | pdb_00005h2d

5H54 | pdb_00005h54

5H55 | pdb_00005h55

5H5A | pdb_00005h5a

5H5C | pdb_00005h5c

5I8I | pdb_00005i8i

5IFK | pdb_00005ifk