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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Methanocaldococcus jannaschii"

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Search Summary

This query matches 518 Structures.

Refinements

Structure Determination Methodology

experimental (518)

Scientific Name of Source Organism

	Methanocaldococcus jannaschii (305)
	Methanocaldococcus jannaschii DSM 2661 (215)
	synthetic construct (5)
	Methanopyrus kandleri (3)
	Pyrococcus furiosus DSM 3638 (3)
	Escherichia coli (2)
	Escherichia coli K-12 (2)
	Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (2)
	Methanosarcina acetivorans C2A (2)
	Mus musculus (2)

More...

Taxonomy

	Archaea (518)
	Bacteria (6)
	other sequences (5)
	Eukaryota (4)

Experimental Method

	X-RAY DIFFRACTION (488)
	SOLUTION NMR (19)
	ELECTRON MICROSCOPY (10)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

	Protein (517)
	RNA (28)
	DNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (15)
	1.5 - 2.0 (138)
	2.0 - 2.5 (177)
	2.5 - 3.0 (108)
	3.0 - 3.5 (36)
	3.5 - 4.0 (14)
	4.0 - 4.5 (5)
	> 4.5 (6)

Release Date

	1995 - 1999 (10)
	2000 - 2004 (77)
	2005 - 2009 (156)
	2010 - 2014 (116)
	2015 - 2019 (76)
	2020 - 2024 (83)

Enzyme Classification Name

	Transferases (114)
	Lyases (60)
	Hydrolases (66)
	Ligases (60)
	Oxidoreductases (25)
	Isomerases (17)
	Translocases (4)

Membrane Protein Annotation

	PDBTM (39)
	MemProtMD (36)
	OPM (23)
	mpstruc (21)

Symmetry Type

	Cyclic (269)
	Asymmetric (213)
	Dihedral (72)
	Octahedral (6)
	Helical (1)
	Icosahedral (1)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (162)
	Alpha and beta proteins (a+b) (75)
	Artifacts (66)
	All beta proteins (29)
	All alpha proteins (14)
	Membrane and cell surface proteins and peptides (7)
	Coiled coil proteins (1)
	Multi-domain proteins (alpha and beta) (7)
	Small proteins (7)

AllSelected

1 to 25 of 518 Structures

Page 1 of 21

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1A76 \| pdb_00001a76	Download File View File

FLAP ENDONUCLEASE-1 FROM METHANOCOCCUS JANNASCHII

Hwang, K.Y., Baek, K., Kim, H., Cho, Y.

(1998) Nat Struct Biol 5: 707-713

Released	1999-08-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	FLAP ENDONUCLEASE-1 PROTEIN (protein)
Unique Ligands	MN

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1A77 \| pdb_00001a77	Download File View File

FLAP ENDONUCLEASE-1 FROM METHANOCOCCUS JANNASCHII

Hwang, K.Y., Baek, K., Kim, H., Cho, Y.

(1998) Nat Struct Biol 5: 707-713

Released	1999-08-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	FLAP ENDONUCLEASE-1 PROTEIN (protein)
Unique Ligands	MG

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1A79 \| pdb_00001a79	Download File View File

CRYSTAL STRUCTURE OF THE TRNA SPLICING ENDONUCLEASE FROM METHANOCOCCUS JANNASCHII

Li, H., Trotta, C.R., Abelson, J.N.

(1998) Science 280: 279-284

Released	1999-06-01
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	TRNA ENDONUCLEASE (protein)
Unique Ligands	AU, SO4

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1B78 \| pdb_00001b78	Download File View File

STRUCTURE-BASED IDENTIFICATION OF THE BIOCHEMICAL FUNCTION OF A HYPOTHETICAL PROTEIN FROM METHANOCOCCUS JANNASCHII:MJ0226

Hwang, K.Y., Chung, J.H., Han, Y.S., Kim, S.H., Cho, Y.

(1999) Nat Struct Biol 6: 691-696

Released	2000-01-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PYROPHOSPHATASE (protein)

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1CJS \| pdb_00001cjs	Download File View File

CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L1 FROM METHANOCOCCUS JANNASCHII

Nevskaya, N., Tishchenko, S., Fedorov, R., Al-Karadaghi, S., Liljas, A., Kraft, A., Piendl, W., Garber, M., Nikonov, S.

(2000) Structure 8: 363-371

Released	2000-05-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	50S RIBOSOMAL PROTEIN L1P (protein)

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1D3Y \| pdb_00001d3y	Download File View File

STRUCTURE OF THE DNA TOPOISOMERASE VI A SUBUNIT

Nichols, M.D., DeAngelis, K.A., Keck, J.L., Berger, J.M.

(1999) EMBO J 18: 6177-6188

Released	1999-11-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	DNA TOPOISOMERASE VI A SUBUNIT (protein)
Unique Ligands	MG, NA

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1DK4 \| pdb_00001dk4	Download File View File

CRYSTAL STRUCTURE OF MJ0109 GENE PRODUCT INOSITOL MONOPHOSPHATASE

Stec, B., Yang, H., Johnson, K.A., Chen, L., Roberts, M.F.

(2000) Nat Struct Biol 7: 1046-1050

Released	2000-11-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	INOSITOL MONOPHOSPHATASE (protein)
Unique Ligands	PO4, ZN

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1DUS \| pdb_00001dus	Download File View File

MJ0882-A hypothetical protein from M. jannaschii

Hung, L., Huang, L., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2002) J Struct Funct Genomics 2: 121-127

Released	2000-07-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	MJ0882 (protein)

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1EIF \| pdb_00001eif	Download File View File

EUKARYOTIC TRANSLATION INITIATION FACTOR 5A FROM METHANOCOCCUS JANNASCHII

Kim, K.K., Hung, L.W., Yokota, H., Kim, R., Kim, S.H.

(1998) Proc Natl Acad Sci U S A 95: 10419-10424

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	EUKARYOTIC TRANSLATION INITIATION FACTOR 5A (protein)

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1EKE \| pdb_00001eke	Download File View File

CRYSTAL STRUCTURE OF CLASS II RIBONUCLEASE H (RNASE HII) WITH MES LIGAND

Lai, L.H., Yokota, H., Hung, L.W., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2000) Structure 8: 897-904

Released	2000-09-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	RIBONUCLEASE HII (protein)
Unique Ligands	MES

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1F3O \| pdb_00001f3o	Download File View File

Crystal structure of MJ0796 ATP-binding cassette

Yuan, Y.-R., Hunt, J.F.

(2001) J Biological Chem 276: 32313-32321

Released	2001-07-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN MJ0796 (protein)
Unique Ligands	ADP, MG

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1F5S \| pdb_00001f5s	Download File View File

CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE FROM METHANOCOCCUS JANNASCHII

Wang, W., Kim, R., Jancarik, J., Yokota, H., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2001) Structure 9: 65-72

Released	2001-06-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PHOSPHOSERINE PHOSPHATASE (PSP) (protein)
Unique Ligands	MG, PO4

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1F9A \| pdb_00001f9a	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF NMN ADENYLYLTRANSFERASE FROM METHANOCOCCUS JANNASCHII

D'Angelo, I., Raffaelli, N., Dabusti, V., Lorenzi, T., Magni, G., Rizzi, M.

(2000) Structure 8: 993-1004

Released	2001-01-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	HYPOTHETICAL PROTEIN MJ0541 (protein)
Unique Ligands	ATP, MG

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1FBN \| pdb_00001fbn	Download File View File

CRYSTAL STRUCTURE OF A FIBRILLARIN HOMOLOGUE FROM METHANOCOCCUS JANNASCHII, A HYPERTHERMOPHILE, AT 1.6 A

Wang, H., Boisvert, D., Kim, K.K., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2000) EMBO J 19: 317-323

Released	2000-04-26
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	MJ FIBRILLARIN HOMOLOGUE (protein)

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1FO5 \| pdb_00001fo5	Download File View File

SOLUTION STRUCTURE OF REDUCED MJ0307

Cave, J.W., Cho, H.S., Batchelder, A.M., Kim, R., Yokota, H., Wemmer, D.E., Berkeley Structural Genomics Center (BSGC)

(2001) Protein Sci 10: 384-396

Released	2001-04-11
Method	SOLUTION NMR
Organisms	Methanocaldococcus jannaschii
Macromolecule	THIOREDOXIN (protein)

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1FSZ \| pdb_00001fsz	Download File View File

CRYSTAL STRUCTURE OF THE CELL-DIVISION PROTEIN FTSZ AT 2.8A RESOLUTION

Lowe, J., Amos, L.A.

(1998) Nature 391: 203-206

Released	1998-06-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	FTSZ (protein)
Unique Ligands	GDP

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1FWK \| pdb_00001fwk	Download File View File

CRYSTAL STRUCTURE OF HOMOSERINE KINASE COMPLEXED WITH ADP

Zhou, T., Daugherty, M., Grishin, N.V., Osterman, A.L., Zhang, H.

(2000) Structure 8: 1247-1257

Released	2000-12-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	HOMOSERINE KINASE (protein)
Unique Ligands	ADP, MG

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1FWL \| pdb_00001fwl	Download File View File

CRYSTAL STRUCTURE OF HOMOSERINE KINASE

Zhou, T., Daugherty, M., Grishin, N.V., Osterman, A.L., Zhang, H.

(2000) Structure 8: 1247-1257

Released	2000-12-20
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	HOMOSERINE KINASE (protein)

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1G0H \| pdb_00001g0h	Download File View File

CRYSTAL STRUCTURE OF MJ0109 GENE PRODUCT INOSITOL MONOPHOSPHATASE-FRUCTOSE 1,6 BISPHOSPHATASE

Johnson, K.A., Chen, L., Yang, H., Roberts, M.F., Stec, B.

(2001) Biochemistry 40: 618-630

Released	2001-03-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	INOSITOL MONOPHOSPHATASE (protein)
Unique Ligands	CA, IPD

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1G0I \| pdb_00001g0i	Download File View File

CRYSTAL STRUCTURE OF MJ0109 GENE PRODUCT INOSITOL MONOPHOSPHATASE-FRUCTOSE 1,6 BISPHOSPHATASE

Johnson, K.A., Chen, L., Yang, H., Roberts, M.F., Stec, B.

(2001) Biochemistry 40: 618-630

Released	2001-03-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	INOSITOL MONOPHOSPHATASE (protein)
Unique Ligands	INS, MN, PO4

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1G61 \| pdb_00001g61	Download File View File

CRYSTAL STRUCTURE OF M.JANNASCHII EIF6

Groft, C.M., Beckmann, R., Sali, A., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2000) Nat Struct Biol 7: 1156-1164

Released	2000-11-22
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	TRANSLATION INITIATION FACTOR 6 (protein)

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1G6H \| pdb_00001g6h	Download File View File

CRYSTAL STRUCTURE OF THE ADP CONFORMATION OF MJ1267, AN ATP-BINDING CASSETTE OF AN ABC TRANSPORTER

Yuan, Y.-R., Martsinkevich, O., Karpowich, N., Millen, L., Thomas, P.J., Hunt, J.F.

(2001) Structure 9: 571-586

Released	2001-07-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN (protein)
Unique Ligands	ADP, MG, MMC

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1G8S \| pdb_00001g8s	Download File View File

METHANOCOCCUS JANNASCHII FIBRILLARIN PRE-RRNA PROCESSING PROTEIN

Boisvert, D.C., Kim, S.H.

To be published

Released	2003-10-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN (protein)
Unique Ligands	MET

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1G9X \| pdb_00001g9x	Download File View File

CHARACTERIZATION OF THE TWINNING STRUCTURE OF MJ1267, AN ATP-BINDING CASSETTE OF AN ABC TRANSPORTER

Yuan, Y.-R., Hunt, J.F.

(2003) Acta Crystallogr D Biol Crystallogr 59: 225-238

Released	2003-02-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN (protein)
Unique Ligands	ADP, MG, MMC

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1GAJ \| pdb_00001gaj	Download File View File

CRYSTAL STRUCTURE OF A NUCLEOTIDE-FREE ATP-BINDING CASSETTE FROM AN ABC TRANSPORTER

Karpowich, N., Yuan, Y.-R., Dai, P.L., Martsinkevich, O., Millen, L., Thomas, P.J., Hunt, J.F.

(2001) Structure 9: 571-586

Released	2001-07-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	HIGH-AFFINITY BRANCHED CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN (protein)
Unique Ligands	CL, PEG, SO4, TBU

1 to 25 of 518 Structures

Page 1 of 21

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A76 | pdb_00001a76

1A77 | pdb_00001a77

1A79 | pdb_00001a79

1B78 | pdb_00001b78

1CJS | pdb_00001cjs

1D3Y | pdb_00001d3y

1DK4 | pdb_00001dk4

1DUS | pdb_00001dus

1EIF | pdb_00001eif

1EKE | pdb_00001eke

1F3O | pdb_00001f3o

1F5S | pdb_00001f5s

1F9A | pdb_00001f9a

1FBN | pdb_00001fbn

1FO5 | pdb_00001fo5

1FSZ | pdb_00001fsz

1FWK | pdb_00001fwk

1FWL | pdb_00001fwl

1G0H | pdb_00001g0h

1G0I | pdb_00001g0i

1G61 | pdb_00001g61

1G6H | pdb_00001g6h

1G8S | pdb_00001g8s

1G9X | pdb_00001g9x

1GAJ | pdb_00001gaj