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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Norwalk-like virus"

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This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

Norwalk-like virus (9)

Taxonomy

Riboviria (9)

Experimental Method

X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (2)

Release Date

	2010 - 2014 (8)
	2015 - 2019 (1)

Symmetry Type

	Cyclic (7)
	Asymmetric (2)

SCOP Classification

	All beta proteins (8)
	Multi-domain proteins (alpha and beta) (1)

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1 to 9 of 9 Structures

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3ASP \| pdb_00003asp	Download File View File

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with A-antigen

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA
Unique branched monosaccharides	A2G, FUC, GAL, NAG

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3ASQ \| pdb_00003asq	Download File View File

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with H-antigen

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA, NPO
Unique branched monosaccharides	FUC, GAL, NAG

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3ASR \| pdb_00003asr	Download File View File

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with Lewis-a

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA, NPO
Unique branched monosaccharides	FUC, GAL, NAG

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3ASS \| pdb_00003ass	Download File View File

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with Lewis-b

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA, NPO
Unique branched monosaccharides	FUC, GAL, NAG

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3AST \| pdb_00003ast	Download File View File

Crystal structure of P domain Q389N mutant from Norovirus Funabashi258 stain in the complex with Lewis-b

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA, NPO
Unique branched monosaccharides	FUC, GAL, NAG

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3R6J \| pdb_00003r6j	Download File View File

Crystal Structure of the Capsid P Domain from Norwalk Virus Strain Hiroshima/1999

Hansman, G.S., Biertumpfel, C., McLellan, J.S., Georgiev, I., Chen, L., Zhou, T., Katayama, K., Kwong, P.D.

(2011) J Virol 85: 6687-6701

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Norwalk-like virus
Macromolecule	VP1 protein (protein)
Unique Ligands	EDO

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3R6K \| pdb_00003r6k	Download File View File

Crystal Structure of the Capsid P Domain from Norwalk Virus Strain Hiroshima/1999 in complex with HBGA type B (triglycan)

Hansman, G.S., Biertumpfel, C., McLellan, J.S., Georgiev, I., Chen, L., Zhou, T., Katayama, K., Kwong, P.D.

(2011) J Virol 85: 6687-6701

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	VP1 protein (protein)
Unique Ligands	EDO
Unique branched monosaccharides	FUC, GAL, GLA

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4NRT \| pdb_00004nrt	Download File View File

Human Norovirus polymerase bound to Compound 6 (suramin derivative)

Croci, R., Pezzullo, M., Tarantino, D., Mastrangelo, E., Milani, M., Bolognesi, M.

(2014) PLoS One 9: e91765-e91765

Released	2014-10-15
Method	X-RAY DIFFRACTION 2.022 Å
Organisms	Norwalk-like virus
Macromolecule	hNV-RdRp (protein)
Unique Ligands	2NG

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6GW4 \| pdb_00006gw4	Download File View File

GII.22 human norovirus protruding domain in complex with glycochenodeoxycholate (GCDCA)

Kilic, T., Hansman, G.S.

(2019) J Virol 93:

Released	2018-10-17
Method	X-RAY DIFFRACTION 2.295 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	CHO, EDO

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3ASP | pdb_00003asp

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with A-antigen

3ASQ | pdb_00003asq

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with H-antigen

3ASR | pdb_00003asr

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with Lewis-a

3ASS | pdb_00003ass

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with Lewis-b

3AST | pdb_00003ast

Crystal structure of P domain Q389N mutant from Norovirus Funabashi258 stain in the complex with Lewis-b

3R6J | pdb_00003r6j

Crystal Structure of the Capsid P Domain from Norwalk Virus Strain Hiroshima/1999

3R6K | pdb_00003r6k

Crystal Structure of the Capsid P Domain from Norwalk Virus Strain Hiroshima/1999 in complex with HBGA type B (triglycan)

4NRT | pdb_00004nrt

Human Norovirus polymerase bound to Compound 6 (suramin derivative)

6GW4 | pdb_00006gw4

GII.22 human norovirus protruding domain in complex with glycochenodeoxycholate (GCDCA)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

3ASP | pdb_00003asp

3ASQ | pdb_00003asq

3ASR | pdb_00003asr

3ASS | pdb_00003ass

3AST | pdb_00003ast

3R6J | pdb_00003r6j

3R6K | pdb_00003r6k

4NRT | pdb_00004nrt

6GW4 | pdb_00006gw4