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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Simian immunodeficiency virus"

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Search Summary

This query matches 73 Structures.

Refinements

Structure Determination Methodology

experimental (73)

Scientific Name of Source Organism

	Simian immunodeficiency virus (65)
	Macaca mulatta (23)
	Homo sapiens (16)
	Simian immunodeficiency virus - cpz (3)
	Mandrillus sphinx (2)
	Cercocebus atys (1)
	Mus musculus (1)
	Rattus norvegicus (1)
	Simian immunodeficiency virus (F236/SMH4 ISOLATE) (SOOTY MANGABEY) (1)
	Simian immunodeficiency virus (MM251 ISOLATE) (1)

More...

Taxonomy

	Riboviria (70)
	Eukaryota (37)
	Riboviria (RNA viruses and viroids) (3)
	Bacteria (1)
	Duplodnaviria (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (52)
	ELECTRON MICROSCOPY (12)
	SOLUTION NMR (9)

Polymer Entity Type

	Protein (73)
	DNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (5)
	2.0 - 2.5 (22)
	2.5 - 3.0 (18)
	3.0 - 3.5 (6)
	3.5 - 4.0 (4)
	4.0 - 4.5 (5)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (12)
	2000 - 2004 (5)
	2005 - 2009 (3)
	2010 - 2014 (16)
	2015 - 2019 (13)
	2020 - 2024 (18)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (7)
	Transferases (5)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (42)
	Cyclic (32)

SCOP Classification

	Coiled coil proteins (10)
	All beta proteins (14)
	Alpha and beta proteins (a/b) (4)
	All alpha proteins (6)
	Alpha and beta proteins (a+b) (3)
	Artifacts (4)

AllSelected

1 to 25 of 73 Structures

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1AZ5 \| pdb_00001az5	Download File View File

UNLIGANDED SIV PROTEASE STRUCTURE IN AN "OPEN" CONFORMATION

Rose, R.B., Craik, C.S., Stroud, R.M.

(1998) Biochemistry 37: 2607-2621

Released	1998-05-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Simian immunodeficiency virus
Macromolecule	SIV PROTEASE (protein)

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1C6V \| pdb_00001c6v	Download File View File

SIV INTEGRASE (CATALYTIC DOMAIN + DNA BIDING DOMAIN COMPRISING RESIDUES 50-293) MUTANT WITH PHE 185 REPLACED BY HIS (F185H)

Chen, Z., Yan, Y., Munshi, S., Li, Y., Zruygay-Murphy, J., Xu, B., Witmer, M., Felock, P., Wolfe, A., Sardana, V., Emini, E.A., Hazuda, D., Kuo, L.C.

(2000) J Mol Biology 296: 521-533

Released	2000-12-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Simian immunodeficiency virus
Macromolecule	PROTEIN (SIU89134) (protein) PROTEIN (SIV INTEGRASE) (protein)

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1ECW \| pdb_00001ecw	Download File View File

CRYSTAL STRUCTURE OF SIMIAN IMMUNODEFICIENCY VIRUS MATRIX ANTIGEN (SIV MA) AT 293K.

Rao, Z., Belyaev, A., Fry, E., Roy, P., Jones, I.M., Stuart, D.I.

(1995) Nature 378: 743-747

Released	2000-02-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Simian immunodeficiency virus
Macromolecule	GAG POLYPROTEIN (protein)
Unique Ligands	IPA

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1ED1 \| pdb_00001ed1	Download File View File

CRYSTAL STRUCTURE OF SIMIAN IMMUNODEFICIENCY VIRUS MATRIX ANTIGEN (SIV MA) AT 100K.

Rao, Z., Belyaev, A., Fry, E., Roy, P., Jones, I.M., Stuart, D.I.

(1995) Nature 378: 743-747

Released	2000-02-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Simian immunodeficiency virus - mac
Macromolecule	GAG POLYPROTEIN (protein)
Unique Ligands	IPA

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1JPX \| pdb_00001jpx	Download File View File

Mutation that destabilize the gp41 core: determinants for stabilizing the SIV/CPmac envelope glycoprotein complex. Wild type.

Liu, J., Wang, S., LaBranche, C.C., Hoxie, J.A., Lu, M.

(2002) J Biological Chem 277: 12891-12900

Released	2002-04-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Simian immunodeficiency virus
Macromolecule	gp41 envelope protein (protein)

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1JQ0 \| pdb_00001jq0	Download File View File

Mutation that destabilize the gp41 core: determinants for stabilizing the SIV/CPmac envelope glycoprotein complex. Mutant structure.

Liu, J., Wang, S., LaBranche, C.C., Hoxie, J.A., Lu, M.

(2002) J Biological Chem 277: 12891-12900

Released	2002-04-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Simian immunodeficiency virus
Macromolecule	gp41 envelope protein (protein)

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1QBZ \| pdb_00001qbz	Download File View File

THE CRYSTAL STRUCTURE OF THE SIV GP41 ECTODOMAIN AT 1.47 A

Yang, Z.-N., Mueser, T.C., Kaufman, J., Stahl, S.J., Wingfield, P.T., Hyde, C.C.

(1999) J Struct Biol 126: 131-144

Released	1999-05-17
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Simian immunodeficiency virus
Macromolecule	PROTEIN (SIV GP41 ECTODOMAIN) (protein)
Unique Ligands	CL, HG, MRD

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1QCE \| pdb_00001qce	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, RESTRAINED REGULARIZED MEAN STRUCTURE PLUS 29 SIMULATED ANNEALING STRUCTURES

Clore, G.M.

(1999) J Am Chem Soc 121: 2337-2338

Released	1999-07-18
Method	SOLUTION NMR
Organisms	Simian immunodeficiency virus
Macromolecule	PROTEIN (GP41) (protein)

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1SIP \| pdb_00001sip	Download File View File

ALTERNATIVE NATIVE FLAP CONFORMATION REVEALED BY 2.3 ANGSTROMS RESOLUTION STRUCTURE OF SIV PROTEINASE

Wilderspin, A.F.

(1994) J Mol Biology 239: 97-103

Released	1994-08-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Simian immunodeficiency virus
Macromolecule	UNLIGANDED SIV PROTEASE (protein)

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1SIV \| pdb_00001siv	Download File View File

THREE-DIMENSIONAL STRUCTURE OF A SIV PROTEASE(SLASH)INHIBITOR COMPLEX. IMPLICATIONS FOR THE DESIGN OF HIV-1 AND HIV-2 PROTEASE INHIBITORS

Zhao, B., Abdel-Meguid, S.

(1993) Biochemistry 32: 13054-13060

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Simian immunodeficiency virus
Macromolecule	SIV PROTEASE (protein)
Unique Ligands	PSI

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1TCW \| pdb_00001tcw	Download File View File

SIV PROTEASE COMPLEXED WITH INHIBITOR SB203386

Hoog, S.S., Abdel-Meguid, S.S.

(1996) Biochemistry 35: 10279-10286

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Simian immunodeficiency virus
Macromolecule	SIV PROTEASE (protein)
Unique Ligands	IM1

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1YTI \| pdb_00001yti	Download File View File

SIV PROTEASE CRYSTALLIZED WITH PEPTIDE PRODUCT

Rose, R.B., Craik, C.S., Douglas, N.L., Stroud, R.M.

(1996) Biochemistry 35: 12933-12944

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Simian immunodeficiency virus
Macromolecule	PEPTIDE PRODUCT (protein) SIV PROTEASE (protein)

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1YTJ \| pdb_00001ytj	Download File View File

SIV PROTEASE CRYSTALLIZED WITH PEPTIDE PRODUCT

Rose, R.B., Craik, C.S., Douglas, N.L., Stroud, R.M.

(1996) Biochemistry 35: 12933-12944

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Simian immunodeficiency virus
Macromolecule	PEPTIDE PRODUCT (protein) SIV PROTEASE (protein)

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2A51 \| pdb_00002a51	Download File View File

Structure of the (13-51) domain of the nucleocapsid protein NCp8 from SIVlhoest

Morellet, N., Meudal, H., Bouaziz, S., Roques, B.P.

(2006) Biochem J 393: 725-732

Released	2006-06-20
Method	SOLUTION NMR
Organisms	Simian immunodeficiency virus
Macromolecule	nucleocapsid protein (protein)
Unique Ligands	ZN

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2BF1 \| pdb_00002bf1	Download File View File

Structure of an unliganded and fully-glycosylated SIV gp120 envelope glycoprotein

Chen, B., Vogan, E.M., Gong, H., Skehel, J.J., Wiley, D.C., Harrison, S.C.

(2005) Nature 433: 834

Released	2005-02-17
Method	X-RAY DIFFRACTION 4 Å
Organisms	Simian immunodeficiency virus
Macromolecule	EXTERIOR MEMBRANE GLYCOPROTEIN GP120 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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2EZO \| pdb_00002ezo	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, RESTRAINED REGULARIZED MEAN STRUCTURE

Caffrey, M., Gronenborn, A.M., Clore, G.M.

(1998) EMBO J 17: 4572-4584

Released	1998-10-14
Method	SOLUTION NMR
Organisms	Simian immunodeficiency virus
Macromolecule	GP41 (protein)

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2EZP \| pdb_00002ezp	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, MODELS 1-10 OF AN ENSEMBLE OF 40 SIMULATED ANNEALING STRUCTURES

Caffrey, M., Gronenborn, A.M., Clore, G.M.

(1998) EMBO J 17: 4572-4584

Released	1998-10-14
Method	SOLUTION NMR
Organisms	Simian immunodeficiency virus
Macromolecule	GP41 (protein)

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2EZQ \| pdb_00002ezq	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, MODELS 11-20 OF AN ENSEMBLE OF 40 SIMULATED ANNEALING STRUCTURES

Caffrey, M., Gronenborn, A.M., Clore, G.M.

(1998) EMBO J 17: 4572-4584

Released	1998-10-14
Method	SOLUTION NMR
Organisms	Simian immunodeficiency virus
Macromolecule	GP41 (protein)

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2EZR \| pdb_00002ezr	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, MODELS 21-30 OF AN ENSEMBLE OF 40 SIMULATED ANNEALING STRUCTURES

Caffrey, M., Gronenborn, A.M., Clore, G.M.

(1998) EMBO J 17: 4572-4584

Released	1998-10-14
Method	SOLUTION NMR
Organisms	Simian immunodeficiency virus
Macromolecule	GP41 (protein)

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2EZS \| pdb_00002ezs	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, MODELS 31-40 OF AN ENSEMBLE OF 40 SIMULATED ANNEALING STRUCTURES

Caffrey, M., Gronenborn, A.M., Clore, G.M.

(1998) EMBO J 17: 4572-4584

Released	1998-10-14
Method	SOLUTION NMR
Organisms	Simian immunodeficiency virus
Macromolecule	GP41 (protein)

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2SAM \| pdb_00002sam	Download File View File

STRUCTURE OF THE PROTEASE FROM SIMIAN IMMUNODEFICIENCY VIRUS: COMPLEX WITH AN IRREVERSIBLE NON-PEPTIDE INHIBITOR

Rose, R.B., Rose, J.R., Salto, R., Craik, C.S., Stroud, R.M.

(1993) Biochemistry 32: 12498-12507

Released	1994-10-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Simian immunodeficiency virus
Macromolecule	SIV PROTEASE (protein)
Unique Ligands	EPN

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2SIV \| pdb_00002siv	Download File View File

SIV GP41 CORE STRUCTURE

Malashkevich, V.N., Chan, D.C., Chutkowski, C.T., Kim, P.S.

(1998) Proc Natl Acad Sci U S A 95: 9134-9139

Released	1998-08-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Simian immunodeficiency virus
Macromolecule	SIV GP41 GLYCOPROTEIN (protein)

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2XS1 \| pdb_00002xs1	Download File View File

Crystal Structure of ALIX in complex with the SIVmac239 PYKEVTEDL Late Domain

Zhai, Q., Landesman, M., Robinson, H., Sundquist, W.I., Hill, C.P.

(2011) J Virol 85: 632

Released	2010-11-03
Method	X-RAY DIFFRACTION 2.296 Å
Organisms	Homo sapiens Simian immunodeficiency virus
Macromolecule	GAG POLYPROTEIN (protein) PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN (protein)

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2XS8 \| pdb_00002xs8	Download File View File

Crystal Structure of ALIX in complex with the SIVagmTan-1 AYDPARKLL Late Domain

Zhai, Q., Landesman, M., Robinson, H., Sundquist, W.I., Hill, C.P.

(2011) J Virol 85: 632

Released	2010-11-03
Method	X-RAY DIFFRACTION 2.498 Å
Organisms	Homo sapiens Simian immunodeficiency virus
Macromolecule	PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN (protein) SIVAGMTAN-1 GAG P6 (protein)

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3FUS \| pdb_00003fus	Download File View File

Improved Structure of the Unliganded Simian Immunodeficiency Virus gp120 Core

Chen, X., Poon, B., Wang, Q., Ma, J.

(2009) Acta Crystallogr D Biol Crystallogr 65: 339-347

Released	2009-06-30
Method	X-RAY DIFFRACTION 4 Å
Organisms	Simian immunodeficiency virus
Macromolecule	EXTERIOR MEMBRANE GLYCOPROTEIN GP120 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUL, MAN, NAG

1 to 25 of 73 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AZ5 | pdb_00001az5

1C6V | pdb_00001c6v

1ECW | pdb_00001ecw

1ED1 | pdb_00001ed1

1JPX | pdb_00001jpx

1JQ0 | pdb_00001jq0

1QBZ | pdb_00001qbz

1QCE | pdb_00001qce

1SIP | pdb_00001sip

1SIV | pdb_00001siv

1TCW | pdb_00001tcw

1YTI | pdb_00001yti

1YTJ | pdb_00001ytj

2A51 | pdb_00002a51

2BF1 | pdb_00002bf1

2EZO | pdb_00002ezo

2EZP | pdb_00002ezp

2EZQ | pdb_00002ezq

2EZR | pdb_00002ezr

2EZS | pdb_00002ezs

2SAM | pdb_00002sam

2SIV | pdb_00002siv

2XS1 | pdb_00002xs1

2XS8 | pdb_00002xs8

3FUS | pdb_00003fus