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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Thermobifida fusca YX"

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Search Summary

This query matches 58 Structures.

Refinements

Structure Determination Methodology

experimental (58)

Scientific Name of Source Organism

	Thermobifida fusca YX (58)
	Thermobifida fusca (1)

Taxonomy

Bacteria (58)

Experimental Method

	X-RAY DIFFRACTION (51)
	SOLUTION NMR (4)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

	Protein (58)
	DNA (7)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (21)
	2.0 - 2.5 (15)
	2.5 - 3.0 (8)
	3.0 - 3.5 (6)
	3.5 - 4.0 (2)

Release Date

	2005 - 2009 (9)
	2010 - 2014 (13)
	2015 - 2019 (14)
	2020 - 2024 (21)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (3)
	Lyases (5)
	Oxidoreductases (6)
	Transferases (3)
	Ligases (2)
	Translocases (1)

Symmetry Type

	Asymmetric (41)
	Cyclic (22)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a/b) (6)
	Alpha and beta proteins (a+b) (7)
	All alpha proteins (4)
	Multi-domain proteins (alpha and beta) (2)
	Artifacts (2)
	All beta proteins (1)

AllSelected

1 to 25 of 58 Structures

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2LE1 \| pdb_00002le1	Download File View File

Solution NMR Structure of Tfu_2981 from Thermobifida fusca, Northeast Structural Genomics Consortium Target TfR85A

Pulavarti, S.V.S.R.K., Eletsky, A., Mills, J.L., Sukumaran, D.K., Wang, D., Ciccosanti, C., Hamilton, K., Rost, B., Acton, T.B., Xiao, R., Everett, J.K., Lee, H., Prestegard, J.H., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2011-06-29
Method	SOLUTION NMR
Organisms	Thermobifida fusca YX
Macromolecule	Uncharacterized protein (protein)

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2OPJ \| pdb_00002opj	Download File View File

Crystal structure of O-succinylbenzoate synthase

Sugadev, R., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-02-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Thermobifida fusca YX
Macromolecule	O-succinylbenzoate-CoA synthase (protein)

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2PFE \| pdb_00002pfe	Download File View File

Crystal Structure of Thermobifida fusca Protease A (TFPA)

Kelch, B.A., Agard, D.A.

(2007) J Mol Biology 370: 784-795

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.436 Å
Organisms	Thermobifida fusca YX
Macromolecule	Alkaline serine protease (protein)
Unique Ligands	AES, GOL, SO4

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2QE6 \| pdb_00002qe6	Download File View File

CRYSTAL STRUCTURE OF A PUTATIVE METHYLTRANSFERASE (TFU_2867) FROM THERMOBIFIDA FUSCA YX AT 1.95 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Thermobifida fusca YX
Macromolecule	Uncharacterized protein Tfu_2867 (protein)
Unique Ligands	MPD, SAM, SO4

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2QVH \| pdb_00002qvh	Download File View File

Crystal structure of O-succinylbenzoate synthase complexed with O-succinyl benzoate (OSB)

Sugadev, R., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-08-28
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Thermobifida fusca YX
Macromolecule	O-succinylbenzoate-CoA synthase (protein)
Unique Ligands	MG, OSB

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3BBJ \| pdb_00003bbj	Download File View File

CRYSTAL STRUCTURE OF A PUTATIVE THIOESTERASE II (TFU_2367) FROM THERMOBIFIDA FUSCA YX AT 2.45 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-11-20
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Thermobifida fusca YX
Macromolecule	Putative thioesterase II (protein)
Unique Ligands	CL, EDO, SO4

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3BGU \| pdb_00003bgu	Download File View File

Crystal structure of a dimeric ferredoxin-like protein of unknown function (tfu_0763) from thermobifida fusca yx at 1.50 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-12-11
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermobifida fusca YX
Macromolecule	Ferredoxin-like protein of unknown function (protein)
Unique Ligands	ACT, CL, EDO, NBZ

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3CM1 \| pdb_00003cm1	Download File View File

Crystal structure of SsgA-like sporulation-specific cell division protein (YP_290167.1) from Thermobifida fusca YX-ER1 at 2.60 A resolution

Joint Center for Structural Genomics (JCSG), Chruszcz, M., Minor, W., Wang, S.

(2009) J Biological Chem 284: 25268-25279

Released	2008-04-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermobifida fusca YX
Macromolecule	SsgA-like sporulation-specific cell division protein (protein)

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3DCF \| pdb_00003dcf	Download File View File

Crystal structure of transcriptional regulator of the TetR/AcrR family (YP_290855.1) from THERMOBIFIDA FUSCA YX-ER1 at 2.50 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2008-07-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermobifida fusca YX
Macromolecule	transcriptional regulator of the TetR/AcrR family (protein)

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3F7W \| pdb_00003f7w	Download File View File

Crystal structure of putative fructosamine-3-kinase (YP_290396.1) from THERMOBIFIDA FUSCA YX-ER1 at 1.85 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2008-11-25
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Thermobifida fusca YX
Macromolecule	putative fructosamine-3-kinase (protein)
Unique Ligands	CL, EDO, PEG, UNL

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3MCR \| pdb_00003mcr	Download File View File

Crystal structure of NADH dehydrogenase subunit C (Tfu_2693) from THERMOBIFIDA FUSCA YX-ER1 at 2.65 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2010-05-12
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Thermobifida fusca YX
Macromolecule	NADH dehydrogenase, subunit C (protein)
Unique Ligands	CO, HEZ

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3WVO \| pdb_00003wvo	Download File View File

Crystal structure of Thermobifida fusca Cse1

Yuan, Y.A., Tay, M.

(2015) Protein Sci 24: 236-245

Released	2015-01-14
Method	X-RAY DIFFRACTION 3.31 Å
Organisms	Thermobifida fusca YX
Macromolecule	CRISPR-associated protein, Cse1 family (protein)

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4AVN \| pdb_00004avn	Download File View File

Thermobifida fusca cellobiohydrolase Cel6B catalytic mutant D226A- S232A cocrystallized with cellobiose

Wu, M., Vuong, T.V., Wilson, D.B., Sandgren, M., Stahlberg, J., Hansson, H.

(2013) J Biological Chem 288: 33107

Released	2013-06-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermobifida fusca YX
Macromolecule	CELLOBIOHYDROLASE. GLYCOSYL HYDROLASE FAMILY 6 (protein)
Unique Ligands	BGC, CA
Unique branched monosaccharides	BGC

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4AVO \| pdb_00004avo	Download File View File

Thermobifida fusca cellobiohydrolase Cel6B catalytic mutant D274A cocrystallized with cellobiose

Wu, M., Vuong, T.V., Wilson, D.B., Sandgren, M., Stahlberg, J., Hansson, H.

(2013) J Biological Chem 288: 33107

Released	2013-06-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermobifida fusca YX
Macromolecule	BETA-1,4-EXOCELLULASE (protein)
Unique Ligands	ACT, CA
Unique branched monosaccharides	BGC

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4E6E \| pdb_00004e6e	Download File View File

Crystal structure of a putative cell division protein FtsZ (Tfu_1113) from Thermobifida fusca YX-ER1 at 2.22 A resolution (PSI Community Target, van Wezel G.P.)

Joint Center for Structural Genomics (JCSG)

To be published

Released	2012-06-06
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Thermobifida fusca YX
Macromolecule	Cell division protein ftsZ (protein)
Unique Ligands	CL, MG, SO4

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4H79 \| pdb_00004h79	Download File View File

Crystal structure of CasB from Thermobifida fusca

Ke, A., Nam, K.H.

(2012) FEBS Lett 586: 3956-3961

Released	2012-10-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermobifida fusca YX
Macromolecule	CRISPR-associated protein, Cse2 family (protein)
Unique Ligands	EDO

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4JSB \| pdb_00004jsb	Download File View File

Crystal structure of Tfu_1878, a putative enoyl-CoA hydratase from Thermobifida fusca YX

Mikolajczak, K., Porebski, P.J., Cooper, D.R., Ahmed, M., Stead, M., Hillerich, B., Seidel, R., Zimmerman, M., Bonanno, J.B., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2013-06-19
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Thermobifida fusca YX
Macromolecule	Enoyl-CoA hydratase (protein)
Unique Ligands	SO4

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4JVT \| pdb_00004jvt	Download File View File

Crystal structure of Tfu_1878, a putative enoyl-CoA hydratase fromThermobifida fusca YX in complex with CoA

To be published

Released	2013-06-19
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Thermobifida fusca YX
Macromolecule	Enoyl-CoA hydratase (protein)
Unique Ligands	ACO, ACT

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4OMR \| pdb_00004omr	Download File View File

Crystal structure of Tfu_1878, a putative enoyl-CoA hydratase from Thermobifida fusca YX in complex with acetoacetyl-CoA

Langner, K.M., Cooper, D.R., Chapman, H.C., Handing, K.B., Stead, M., Hillerich, B., Ahmed, M., Bonanno, J.B., Seidel, R., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2014-04-02
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Thermobifida fusca YX
Macromolecule	Enoyl-CoA hydratase (protein)
Unique Ligands	BEN, CAA

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4QQW \| pdb_00004qqw	Download File View File

Crystal structure of T. fusca Cas3

Ke, A., Huo, Y., Nam, K.H.

(2014) Nat Struct Mol Biol 21: 771-777

Released	2014-08-27
Method	X-RAY DIFFRACTION 2.664 Å
Organisms	Thermobifida fusca YX
Macromolecule	CRISPR-associated helicase, Cas3 family (protein) DNA (5'-D(PAPAPAPAPAPAPAPAPAPAPAPA)-3') (nucleic acid)
Unique Ligands	FE

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4QQX \| pdb_00004qqx	Download File View File

Crystal structure of T. fusca Cas3-ATP

Ke, A., Huo, Y., Nam, K.H.

(2014) Nat Struct Mol Biol 21: 771-777

Released	2014-08-20
Method	X-RAY DIFFRACTION 3.34 Å
Organisms	Thermobifida fusca YX
Macromolecule	CRISPR-associated helicase, Cas3 family (protein) DNA (5'-D(PAPAPAPAPAPAPAPAPAPAPAPA)-3') (nucleic acid)
Unique Ligands	ATP, FE

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4QQY \| pdb_00004qqy	Download File View File

Crystal structure of T. fusca Cas3-ADP

Ke, A., Huo, Y., Nam, K.H.

(2014) Nat Struct Mol Biol 21: 771-777

Released	2014-08-27
Method	X-RAY DIFFRACTION 3.12 Å
Organisms	Thermobifida fusca YX
Macromolecule	CRISPR-associated helicase, Cas3 family (protein) HD nuclease (nucleic acid)
Unique Ligands	ADP, FE

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4QQZ \| pdb_00004qqz	Download File View File

Crystal structure of T. fusca Cas3-AMPPNP

Ke, A., Huo, Y., Nam, K.H.

(2014) Nat Struct Mol Biol 21: 771-777

Released	2014-08-27
Method	X-RAY DIFFRACTION 2.93 Å
Organisms	Thermobifida fusca YX
Macromolecule	CRISPR-associated helicase, Cas3 family (protein) DNA (5'-D(PAPAPAPAPAPAPAPAPAPAPAPA)-3') (nucleic acid)
Unique Ligands	ANP, FE