RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Thermochaetoides thermophila DSM 1495"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 375 Structures.

Refinements

Structure Determination Methodology

experimental (375)

Scientific Name of Source Organism

	Thermochaetoides thermophila DSM 1495 (375)
	synthetic construct (18)
	Homo sapiens (11)
	Thermochaetoides thermophila (10)
	Saccharomyces cerevisiae S288C (5)
	Xenopus laevis (3)
	Psychromonas sp. B3M02 (2)
	Escherichia coli (1)
	Escherichia coli K-12 (1)
	Mus musculus (1)

More...

Taxonomy

	Eukaryota (375)
	other sequences (18)
	Bacteria (4)

Experimental Method

	X-RAY DIFFRACTION (273)
	ELECTRON MICROSCOPY (99)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (375)
	RNA (37)
	DNA (8)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (19)
	1.5 - 2.0 (45)
	2.0 - 2.5 (90)
	2.5 - 3.0 (93)
	3.0 - 3.5 (64)
	3.5 - 4.0 (27)
	4.0 - 4.5 (13)
	> 4.5 (20)

Release Date

	2010 - 2014 (28)
	2015 - 2019 (159)
	2020 - 2024 (185)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (125)
	Transferases (63)
	Translocases (12)
	Oxidoreductases (11)
	Isomerases (5)
	Ligases (4)
	Lyases (1)

Membrane Protein Annotation

	PDBTM (22)
	OPM (17)
	MemProtMD (13)
	mpstruc (20)

Symmetry Type

	Asymmetric (306)
	Cyclic (70)
	Dihedral (5)
	Icosahedral (3)
	Octahedral (2)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (9)
	Artifacts (10)
	All alpha proteins (7)
	All beta proteins (2)
	Alpha and beta proteins (a+b) (5)

AllSelected

1 to 25 of 375 Structures

Page 1 of 15

Sort by

Explore in 3D

2MVF \| pdb_00002mvf	Download File View File

Structural insight into an essential assembly factor network on the pre-ribosome

Lee, W., Bassler, J., Paternoga, H., Holdermann, I., Thomas, M., Granneman, S., Barrio-Garcia, C., Nyarko, A., Stier, G., Clark, S.A., Schraivogel, D., Kallas, M., Beckmann, R., Tollervey, D., Barbar, E., Sinning, I., Hurt, E.

(2014) J Cell Biol 207: 481-498

Released	2014-12-03
Method	SOLUTION NMR
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Uncharacterized protein (protein)

Explore in 3D

3LPZ \| pdb_00003lpz	Download File View File

Crystal structure of C. therm. Get4

Bozkurt, G., Wild, K., Sinning, I.

(2010) FEBS Lett 584: 1509-1514

Released	2010-03-16
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Uncharacterized protein (protein)

Explore in 3D

3WZS \| pdb_00003wzs	Download File View File

Crystal structure of Trx3 domain of UGGT (detergent-bound form)

Zhu, T., Satoh, T., Kato, K.

(2014) Sci Rep 4: 7322-7322

Released	2014-12-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	UDP-glucose-glycoprotein glucosyltransferase-like protein (protein)
Unique Ligands	PQE

Explore in 3D

3WZT \| pdb_00003wzt	Download File View File

Crystal structure of Trx3 domain of UGGT (detergent-unbound form)

Zhu, T., Satoh, T., Kato, K.

(2014) Sci Rep 4: 7322-7322

Released	2014-12-03
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	UDP-glucose-glycoprotein glucosyltransferase-like protein (protein)

Explore in 3D

4FGV \| pdb_00004fgv	Download File View File

Crystal structure of free CRM1 (crystal form 1)

Monecke, T., Neumann, P., Dickmanns, A., Ficner, R.

(2013) Proc Natl Acad Sci U S A 110: 960-965

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.941 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Chromosome region maintenance 1 (CRM1) or Exportin 1 (Xpo1) (protein)

Explore in 3D

4GMN \| pdb_00004gmn	Download File View File

Structural basis of Rpl5 recognition by Syo1

Bange, G., Sinning, I.

(2012) Science 338: 666-671

Released	2012-10-31
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	60S ribosomal protein l5-like protein (protein) Putative uncharacterized protein (protein)

Explore in 3D

4GMO \| pdb_00004gmo	Download File View File

Crystal structure of Syo1

Bange, G., Sinning, I.

(2012) Science 338: 666-671

Released	2012-10-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Putative uncharacterized protein (protein)

Explore in 3D

4GMQ \| pdb_00004gmq	Download File View File

Ribosome-binding domain of Zuo1

Kopp, J., Bange, G., Sinning, I.

(2013) Nat Struct Mol Biol 20: 23-28

Released	2012-12-05
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Putative ribosome associated protein (protein)

Explore in 3D

4GNI \| pdb_00004gni	Download File View File

Structure of the Ssz1 ATPase bound to ATP and Magnesium

Bange, G., Sinning, I.

(2013) Nat Struct Mol Biol 20: 23-28

Released	2012-12-05
Method	X-RAY DIFFRACTION 1.796 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Putative heat shock protein (protein)
Unique Ligands	ATP, MG

Explore in 3D

4GYG \| pdb_00004gyg	Download File View File

Crystal structure of the Rio2 kinase from Chaetomium thermophilum

Ferreira-Cerca, S., Sagar, V., Schafer, T., Diop, M., Wesseling, A.M., Lu, H., Chai, E., Hurt, E., LaRonde-LeBlanc, N.

(2012) Nat Struct Mol Biol 19: 1316-1323

Released	2012-10-17
Method	X-RAY DIFFRACTION 2.482 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Rio2 kinase (protein)

Explore in 3D

4GYI \| pdb_00004gyi	Download File View File

Crystal structure of the Rio2 kinase-ADP/Mg2+-phosphoaspartate complex from Chaetomium thermophilum

Ferreira-Cerca, S., Sagar, V., Schafer, T., Diop, M., Wesseling, A.M., Lu, H., Chai, E., Hurt, E., LaRonde-LeBlanc, N.

(2012) Nat Struct Mol Biol 19: 1316-1323

Released	2012-10-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Rio2 kinase (protein)
Unique Ligands	ADP, EDO, MG

Explore in 3D

4HZK \| pdb_00004hzk	Download File View File

Crystal structure of free CRM1 (crystal form 2)

Monecke, T., Neumann, P., Dickmanns, A., Ficner, R.

(2013) Proc Natl Acad Sci U S A 110: 960-965

Released	2013-01-23
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	CRM1 Nuclear transport receptor (protein)

Explore in 3D

4IPA \| pdb_00004ipa	Download File View File

Structure of a thermophilic Arx1

Bange, G., Sinning, I.

(2013) BMC Evol Biol 13: 7-7

Released	2013-01-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Putative curved DNA-binding protein (protein)
Unique Ligands	SO4

Explore in 3D

4JC8 \| pdb_00004jc8	Download File View File

Crystal Structure of HOPS component Vps33 from Chaetomium thermophilum

Baker, R.W., Jeffrey, P.D., Hughson, F.M.

(2013) PLoS One 8: e67409-e67409

Released	2013-05-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	HOPS component Vps33 (protein)

Explore in 3D

4KHA \| pdb_00004kha	Download File View File

Structural basis of histone H2A-H2B recognition by the essential chaperone FACT

Hondele, M., Halbach, F., Hassler, M., Ladurner, A.G.

(2013) Nature 499: 111-114

Released	2013-05-29
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Thermochaetoides thermophila DSM 1495 Xenopus laevis
Macromolecule	Histone H2A (protein) Spt16M-Histone H2B 1.1 chimera (protein)
Unique Ligands	CL, TRS

Explore in 3D

4KHB \| pdb_00004khb	Download File View File

Structure of the Spt16D Pob3N heterodimer

Stuwe, T., Zhang, E., Ladurner, A.G.

(2013) Nature 499: 111-114

Released	2013-05-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Uncharacterized protein POB3N (protein) Uncharacterized protein SPT16D (protein)
Unique Ligands	SO4

Explore in 3D

4KHO \| pdb_00004kho	Download File View File

Structure of the FACT complex Subunit Spt16M

Stuwe, T., Hondele, M., Ladurner, A.G.

(2013) Nature 499: 111-114

Released	2013-05-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Uncharacterized protein Spt16M (protein)
Unique Ligands	ACT, CA

Explore in 3D

4KMO \| pdb_00004kmo	Download File View File

Crystal Structure of the Vps33-Vps16 HOPS subcomplex from Chaetomium thermophilum

Baker, R.W., Jeffrey, P.D., Hughson, F.M.

(2013) PLoS One 8: e67409-e67409

Released	2013-06-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Putative vacuolar protein sorting-associated protein (protein) Small conjugating protein ligase-like protein (protein)
Unique Ligands	SO4

Explore in 3D

4LJ0 \| pdb_00004lj0	Download File View File

Nab2 Zn fingers complexed with polyadenosine

Stewart, M., Kuhlmann, S.I., Valkov, E.

(2014) Nucleic Acids Res 42: 672-680

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Nab2 (protein) polyadenosine RNA (nucleic acid)
Unique Ligands	ACT, MG, ZN

Explore in 3D

4N3G \| pdb_00004n3g	Download File View File

Crystal structure of eukaryotic translation initiation factor eIF5B (870-1116) from Chaetomium thermophilum, domains III and IV

Kuhle, B., Ficner, R.

(2014) EMBO J 33: 1177-1191

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.203 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Eukaryotic translation initiation factor 5B-like protein, eIF5B(870-C) (protein)
Unique Ligands	CL, LAC

Explore in 3D

4N3N \| pdb_00004n3n	Download File View File

Crystal structure of eukaryotic translation initiation factor eIF5B (517-1116) from Chaetomium thermophilum, apo form

Kuhle, B., Ficner, R.

(2014) EMBO J 33: 1177-1191

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.752 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Eukaryotic translation initiation factor 5B-like protein, eIF5B(517-C) (protein)
Unique Ligands	LAC

Explore in 3D

4NCL \| pdb_00004ncl	Download File View File

Crystal structure of eukaryotic translation initiation factor eIF5B (517-970) from Chaetomium thermophilum in complex with GDP

Kuhle, B., Ficner, R.

(2014) EMBO J 33: 1177-1191

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.115 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Eukaryotic translation initiation factor 5B-like protein (protein)
Unique Ligands	GDP, MG

Explore in 3D

4NCN \| pdb_00004ncn	Download File View File

Crystal structure of eukaryotic translation initiation factor eIF5B (517-858) from Chaetomium thermophilum in complex with GTP

Kuhle, B., Ficner, R.

(2014) EMBO J 33: 1177-1191

Released	2014-07-09
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Eukaryotic translation initiation factor 5B-like protein (protein)
Unique Ligands	ACY, GOL, GTP, MG, NA

Explore in 3D

4NOX \| pdb_00004nox	Download File View File

Structure of the nine-bladed beta-propeller of eIF3b

Liu, Y., Neumann, P., Kuhle, B., Monecke, T., Ficner, R.

(2014) Structure 22: 923-930

Released	2014-09-17
Method	X-RAY DIFFRACTION 2.722 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Eukaryotic translation initiation factor 3 subunit B (protein)
Unique Ligands	CL

Explore in 3D

4P3G \| pdb_00004p3g	Download File View File

Structure of the SRP68-RBD from Chaetomium thermophilum

Grotwinkel, J.T., Wild, K., Sinning, I.

(2014) Science 344: 101-104

Released	2014-04-16
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Signal recognition particle subunit SRP68 (protein)
Unique Ligands	PO4

1 to 25 of 375 Structures

Page 1 of 15

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2MVF | pdb_00002mvf

3LPZ | pdb_00003lpz

3WZS | pdb_00003wzs

3WZT | pdb_00003wzt

4FGV | pdb_00004fgv

4GMN | pdb_00004gmn

4GMO | pdb_00004gmo

4GMQ | pdb_00004gmq

4GNI | pdb_00004gni

4GYG | pdb_00004gyg

4GYI | pdb_00004gyi

4HZK | pdb_00004hzk

4IPA | pdb_00004ipa

4JC8 | pdb_00004jc8

4KHA | pdb_00004kha

4KHB | pdb_00004khb

4KHO | pdb_00004kho

4KMO | pdb_00004kmo

4LJ0 | pdb_00004lj0

4N3G | pdb_00004n3g

4N3N | pdb_00004n3n

4NCL | pdb_00004ncl

4NCN | pdb_00004ncn

4NOX | pdb_00004nox

4P3G | pdb_00004p3g