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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Thermococcus litoralis"

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Thermococcus litoralis (19)
	Thermococcus litoralis DSM 5473 (5)

Taxonomy

Archaea (24)

Experimental Method

X-RAY DIFFRACTION (24)

Polymer Entity Type

Protein (24)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (7)
	2.0 - 2.5 (11)
	2.5 - 3.0 (5)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (9)
	2005 - 2009 (2)
	2010 - 2014 (2)
	2015 - 2019 (6)
	2020 - 2024 (3)

Enzyme Classification Name

	Transferases (10)
	Isomerases (3)
	Translocases (3)
	Oxidoreductases (2)
	Hydrolases (1)

Symmetry Type

	Asymmetric (12)
	Cyclic (12)
	Dihedral (4)

SCOP Classification

	Alpha and beta proteins (a/b) (12)
	All beta proteins (8)
	Alpha and beta proteins (a+b) (4)
	All alpha proteins (3)
	Artifacts (2)

AllSelected

1 to 24 of 24 Structures

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1A2Z \| pdb_00001a2z	Download File View File

PYRROLIDONE CARBOXYL PEPTIDASE FROM THERMOCOCCUS LITORALIS

Singleton, M.R., Isupov, M.N., Littlechild, J.A.

(1999) Structure 7: 237-244

Released	1998-07-15
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Thermococcus litoralis
Macromolecule	PYRROLIDONE CARBOXYL PEPTIDASE (protein)
Unique Ligands	SO4

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1BVU \| pdb_00001bvu	Download File View File

GLUTAMATE DEHYDROGENASE FROM THERMOCOCCUS LITORALIS

Baker, P.J., Britton, K.L., Yip, K.S., Stillman, T.J., Rice, D.W.

(1999) J Mol Biology 293: 1121-1132

Released	1999-09-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermococcus litoralis
Macromolecule	PROTEIN (GLUTAMATE DEHYDROGENASE) (protein)

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1EU8 \| pdb_00001eu8	Download File View File

STRUCTURE OF TREHALOSE MALTOSE BINDING PROTEIN FROM THERMOCOCCUS LITORALIS

Diez, J., Diederichs, K., Greller, G., Horlacher, R., Boos, W., Welte, W.

(2001) J Mol Biology 305: 905-915

Released	2001-03-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermococcus litoralis
Macromolecule	TREHALOSE/MALTOSE BINDING PROTEIN (protein)
Unique Ligands	CL, PT
Unique branched monosaccharides	GLC

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1G29 \| pdb_00001g29	Download File View File

MALK

Diederichs, K., Diez, J., Greller, G., Mueller, C., Breed, J., Schnell, C., Vonrhein, C., Boos, W., Welte, W.

(2000) EMBO J 19: 5951-5961

Released	2000-12-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermococcus litoralis
Macromolecule	MALTOSE TRANSPORT PROTEIN MALK (protein)
Unique Ligands	CL, DIO, MG, NA, NH4, POP

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1GC5 \| pdb_00001gc5	Download File View File

CRYSTAL STRUCTURE OF A NOVEL ADP-DEPENDENT GLUCOKINASE FROM THERMOCOCCUS LITORALIS

Ito, S., Fushinobu, S., Yoshioka, I., Koga, S., Matsuzawa, H., Wakagi, T.

(2001) Structure 9: 205-214

Released	2001-07-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermococcus litoralis
Macromolecule	ADP-DEPENDENT GLUCOKINASE (protein)
Unique Ligands	ADP

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1J3P \| pdb_00001j3p	Download File View File

Crystal structure of Thermococcus litoralis phosphoglucose isomerase

Jeong, J.-J., Fushinobu, S., Ito, S., Hidaka, M., Shoun, H., Wakagi, T.

To be published

Released	2004-02-24
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Thermococcus litoralis
Macromolecule	Phosphoglucose Isomerase (protein)
Unique Ligands	FE

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1J3Q \| pdb_00001j3q	Download File View File

Crystal structure of Thermococcus litoralis phosphogrucose isomerase soaked with FeSO4

Jeong, J.-J., Fushinobu, S., Ito, S., Hidaka, M., Shoun, H., Wakagi, T.

To be published

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Thermococcus litoralis
Macromolecule	Phosphoglucose Isomerase (protein)
Unique Ligands	FE

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1J3R \| pdb_00001j3r	Download File View File

Crystal structure of Thermococcus litoralis phosphogrucose isomerase complexed with gluconate-6-phosphate

Jeong, J.-J., Fushinobu, S., Ito, S., Hidaka, M., Shoun, H., Wakagi, T.

To be published

Released	2004-02-24
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Thermococcus litoralis
Macromolecule	Phosphoglucose Isomerase (protein)
Unique Ligands	6PG, FE

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1K1W \| pdb_00001k1w	Download File View File

Crystal structure of 4-alpha-glucanotransferase from thermococcus litoralis

Imamura, H., Fushinobu, S., Kumasaka, T., Yamamoto, M., Jeon, B.S., Wakagi, T., Matsuzawa, H.

(2003) J Biological Chem 278: 19378-19386

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermococcus litoralis
Macromolecule	4-ALPHA-GLUCANOTRANSFERASE (protein)
Unique Ligands	CA, GLC, SO4

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1K1X \| pdb_00001k1x	Download File View File

Crystal structure of 4-alpha-glucanotransferase from thermococcus litoralis

Imamura, H., Fushinobu, S., Kumasaka, T., Yamamoto, M., Jeon, B.S., Wakagi, T., Matsuzawa, H.

(2003) J Biological Chem 278: 19378-19386

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermococcus litoralis
Macromolecule	4-ALPHA-GLUCANOTRANSFERASE (protein)
Unique Ligands	CA, TRS

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1K1Y \| pdb_00001k1y	Download File View File

Crystal structure of thermococcus litoralis 4-alpha-glucanotransferase complexed with acarbose

Imamura, H., Fushinobu, S., Kumasaka, T., Yamamoto, M., Jeon, B.S., Wakagi, T., Matsuzawa, H.

(2003) J Biological Chem 278: 19378-19386

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermococcus litoralis
Macromolecule	4-ALPHA-GLUCANOTRANSFERASE (protein)
Unique Ligands	CA, TRS
Unique branched monosaccharides	AC1, GLC

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2F5T \| pdb_00002f5t	Download File View File

Crystal Structure of the sugar binding domain of the archaeal transcriptional regulator TrmB

Krug, M., Lee, S.J., Diederichs, K., Boos, W., Welte, W.

(2006) J Biological Chem 281: 10976-10982

Released	2006-02-21
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Thermococcus litoralis
Macromolecule	archaeal transcriptional regulator TrmB (protein)
Unique Ligands	IMD
Unique branched monosaccharides	GLC

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2ZC0 \| pdb_00002zc0	Download File View File

Crystal structure of an archaeal alanine:glyoxylate aminotransferase

Sakuraba, H., Yoneda, K., Tsuge, H., Ohshima, T.

(2008) Acta Crystallogr D Biol Crystallogr 64: 696-699

Released	2008-06-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermococcus litoralis
Macromolecule	Alanine glyoxylate transaminase (protein)
Unique Ligands	IMD, PMP, ZN

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4B8R \| pdb_00004b8r	Download File View File

Crystal Structure of Thermococcus litoralis ADP-dependent Glucokinase (GK)

Herrera-Morande, A., Rivas-Pardo, J.A., Fernandez, F.J., Guixe, V., Vega, M.C.

(2013) PLoS One 8: 66687

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Thermococcus litoralis
Macromolecule	ADP-DEPENDENT GLUCOKINASE (protein)
Unique Ligands	DTT, GOL, PEG, PGE, SO4, TRS

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4B8S \| pdb_00004b8s	Download File View File

Crystal Structure of Thermococcus litoralis ADP-dependent Glucokinase (GK)

Herrera-Morande, A., Rivas-Pardo, J.A., Fernandez, F.J., Guixe, V., Vega, M.C.

(2013) PLoS One 8: 66687

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Thermococcus litoralis
Macromolecule	ADP-DEPENDENT GLUCOKINASE (protein)
Unique Ligands	AMP, GLC, GOL

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5O5X \| pdb_00005o5x	Download File View File

Crystal structure of Thermococcus litoralis ADP-dependent glucokinase (GK)

Herrera-Morande, A., Castro-Fernandez, V., Merino, F., Ramirez-Sarmiento, C.A., Fernandez, F.J., Guixe, V., Vega, M.C.

(2018) Biochim Biophys Acta Gen Subj 1862: 2869-2878

Released	2018-10-24
Method	X-RAY DIFFRACTION 2.148 Å
Organisms	Thermococcus litoralis DSM 5473
Macromolecule	ADP-dependent glucokinase,ADP-dependent glucokinase,ADP-dependent glucokinase (protein)
Unique Ligands	GOL, SO4

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5O5Y \| pdb_00005o5y	Download File View File

Crystal structure of Thermococcus litoralis ADP-dependent glucokinase (GK)

Herrera-Morande, A., Castro-Fernandez, V., Merino, F., Ramirez-Sarmiento, C.A., Fernandez, F.J., Guixe, V., Vega, M.C.

(2018) Biochim Biophys Acta Gen Subj 1862: 2869-2878

Released	2018-10-24
Method	X-RAY DIFFRACTION 1.915 Å
Organisms	Thermococcus litoralis DSM 5473
Macromolecule	ADP-dependent glucokinase,ADP-dependent glucokinase,ADP-dependent glucokinase (protein)
Unique Ligands	GLC, GOL, PGE

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5O5Z \| pdb_00005o5z	Download File View File

CRYSTAL STRUCTURE OF THERMOCOCCUS LITORALIS ADP-DEPENDENT GLUCOKINASE (GK)

Herrera-Morande, A., Castro-Fernandez, V., Merino, F., Ramirez-Sarmiento, C.A., Fernandez, F.J., Guixe, V., Vega, M.C.

(2018) Biochim Biophys Acta Gen Subj 1862: 2869-2878

Released	2018-10-24
Method	X-RAY DIFFRACTION 2.441 Å
Organisms	Thermococcus litoralis
Macromolecule	ADP-dependent glucokinase,ADP-dependent glucokinase,ADP-dependent glucokinase (protein)
Unique Ligands	AT4, GLC, GOL, SO4

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6J7C \| pdb_00006j7c	Download File View File

Crystal structure of proline racemase-like protein from Thermococcus litoralis in complex with proline

Watanabe, Y., Watanabe, S., Itoh, Y., Watanabe, Y.

(2019) Biochem Biophys Res Commun 511: 135-140

Released	2019-02-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermococcus litoralis DSM 5473
Macromolecule	Proline racemase (protein)
Unique Ligands	PRO

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6R76 \| pdb_00006r76	Download File View File

Crystal structure of trans-3-Hydroxy-L-proline dehydratase from Thermococcus litoralis - open conformation

Ferraris, D.M., Miggiano, R., Rizzi, M.

(2019) Biochem Biophys Res Commun 516: 189-195

Released	2019-07-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermococcus litoralis DSM 5473
Macromolecule	Proline racemase (protein)

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6R77 \| pdb_00006r77	Download File View File

Crystal structure of trans-3-Hydroxy-L-proline dehydratase in complex with substrate - closed conformation

Ferraris, D.M., Miggiano, R., Rizzi, M.

(2019) Biochem Biophys Res Commun 516: 189-195

Released	2019-07-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermococcus litoralis
Macromolecule	Proline racemase (protein)
Unique Ligands	HY3

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6T3E \| pdb_00006t3e	Download File View File

Structure of Thermococcus litoralis Delta(1)-pyrroline-2-carboxylate reductase in complex with NADH and L-proline

Ferraris, D.M., Miggiano, R., Ferrario, E., Rizzi, M.

(2020) Acta Crystallogr D Struct Biol 76: 496-505

Released	2020-05-13
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermococcus litoralis DSM 5473
Macromolecule	DELTA1-pyrroline-2-carboxylate reductase (protein)
Unique Ligands	NAI, PRO

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7QSS \| pdb_00007qss	Download File View File

Crystal structure of homing endonuclease-associated TliVMA intein (C1A)

Beyer, H.M., Iwai, H.

(2022) Front Mol Biosci 9: 855511-855511

Released	2022-03-30
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Thermococcus litoralis
Macromolecule	V-type ATP synthase alpha chain (protein)
Unique Ligands	FMT