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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Vaccinia virus"

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Search Summary

This query matches 198 Structures.

Refinements

Structure Determination Methodology

experimental (198)

Scientific Name of Source Organism

	Vaccinia virus (67)
	Vaccinia virus WR (62)
	Vaccinia virus Western Reserve (29)
	Vaccinia virus Copenhagen (22)
	Homo sapiens (19)
	Mus musculus (10)
	Vaccinia virus GLV-1h68 (10)
	Vaccinia virus Ankara (6)
	synthetic construct (4)
	Rabbitpox virus (2)

More...

Taxonomy

	Varidnaviria (198)
	Eukaryota (27)
	other sequences (4)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (153)
	ELECTRON MICROSCOPY (33)
	SOLUTION NMR (12)

Polymer Entity Type

	Protein (198)
	DNA (15)
	RNA (12)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (37)
	2.0 - 2.5 (53)
	2.5 - 3.0 (52)
	3.0 - 3.5 (21)
	3.5 - 4.0 (8)
	4.0 - 4.5 (3)
	> 4.5 (7)

Release Date

	1995 - 1999 (19)
	2000 - 2004 (6)
	2005 - 2009 (33)
	2010 - 2014 (36)
	2015 - 2019 (48)
	2020 - 2024 (47)
	2025 - 2029 (9)

Enzyme Classification Name

	Transferases (51)
	Hydrolases (65)
	Isomerases (2)
	Lyases (2)

Symmetry Type

	Asymmetric (112)
	Cyclic (88)
	Dihedral (5)
	Helical (1)
	Tetrahedral (1)

SCOP Classification

	All beta proteins (18)
	Alpha and beta proteins (a/b) (23)
	Artifacts (5)
	Multi-domain proteins (alpha and beta) (5)
	Alpha and beta proteins (a+b) (5)
	Small proteins (4)
	All alpha proteins (2)

AllSelected

1 to 25 of 198 Structures

Page 1 of 8

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1A41 \| pdb_00001a41	Download File View File

TYPE 1-TOPOISOMERASE CATALYTIC FRAGMENT FROM VACCINIA VIRUS

Cheng, C., Kussie, P., Pavletich, N., Shuman, S.

(1998) Cell 92: 841-850

Released	1999-06-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Vaccinia virus
Macromolecule	TOPOISOMERASE I (protein)
Unique Ligands	SO4

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1AV6 \| pdb_00001av6	Download File View File

VACCINIA METHYLTRANSFERASE VP39 COMPLEXED WITH M7G CAPPED RNA HEXAMER AND S-ADENOSYLHOMOCYSTEINE

Hodel, A.E., Gershon, P.D., Quiocho, F.A.

(1998) Mol Cell 1: 443-447

Released	1998-02-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Vaccinia virus WR
Macromolecule	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase (protein) RNA (5'-R(GPAPAPAPAPA)-3') (nucleic acid)
Unique Ligands	MGT, SAH

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1B42 \| pdb_00001b42	Download File View File

VACCINIA METHYLTRANSFERASE VP39 COMPLEXED WITH M1ADE AND S-ADENOSYLHOMOCYSTEINE

Hu, G., Hodel, A.E., Gershon, P.D., Quiocho, F.A.

(1999) Proc Natl Acad Sci U S A 96: 7149-7154

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Vaccinia virus
Macromolecule	VP39 (protein)
Unique Ligands	M1A, SAH

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1BKY \| pdb_00001bky	Download File View File

VACCINIA METHYLTRANSFERASE VP39 COMPLEXED WITH M1CYT AND S-ADENOSYLHOMOCYSTEINE

Hu, G., Hodel, A.E., Gershon, P.D., Quiocho, F.A.

(1999) Proc Natl Acad Sci U S A 96: 7149-7154

Released	1999-07-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vaccinia virus
Macromolecule	VP39 (protein)
Unique Ligands	1MC, SAH

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1E5G \| pdb_00001e5g	Download File View File

Solution structure of central CP module pair of a pox virus complement inhibitor

Henderson, C.E., Bromek, K., Mullin, N.P., Smith, B.O., Uhrin, D., Barlow, P.N.

(2001) J Mol Biology 307: 323

Released	2000-08-31
Method	SOLUTION NMR
Organisms	Vaccinia virus Copenhagen
Macromolecule	COMPLEMENT CONTROL PROTEIN C3 (protein)

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1EAM \| pdb_00001eam	Download File View File

VACCINIA METHYLTRANSFERASE VP39 MUTANT (EC: 2.7.7.19)

Hu, G., Hodel, A.E., Gershon, P.D., Quiocho, F.A.

(1999) Proc Natl Acad Sci U S A 96: 7149-7154

Released	1999-06-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vaccinia virus
Macromolecule	PROTEIN (VP39) (protein)
Unique Ligands	SAH

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1EQA \| pdb_00001eqa	Download File View File

VACCINIA METHYLTRANSFERASE VP39 MUTANT E233Q COMPLEXED WITH M7G AND S-ADENOSYLHOMOCYSTEINE

Hu, G., Hodel, A.E., Gershon, P.D., Quiocho, F.A.

(1999) Proc Natl Acad Sci U S A 96: 7149-7154

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Vaccinia virus
Macromolecule	VP39 (protein)
Unique Ligands	MG7, SAH

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1JSZ \| pdb_00001jsz	Download File View File

Crystal Structure Analysis of N7,9-dimethylguanine-VP39 complex

Hu, G., Oguro, A., Gershon, P.D., Quiocho, F.A.

(2002) Biochemistry 41: 7677-7687

Released	2002-07-10
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Vaccinia virus
Macromolecule	VP39 (protein)
Unique Ligands	NDM, SAH

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1JTE \| pdb_00001jte	Download File View File

Crystal Structure Analysis of VP39 F180W mutant

Hu, G., Oguro, A., Gershon, P.D., Quiocho, F.A.

(2002) Biochemistry 41: 7677-7687

Released	2002-07-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vaccinia virus
Macromolecule	VP39 (protein)
Unique Ligands	SAH

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1JTF \| pdb_00001jtf	Download File View File

Crystal Structure Analysis of VP39-F180W mutant and m7GpppG complex

Hu, G., Oguro, A., Gershon, P.D., Quiocho, F.A.

(2002) Biochemistry 41: 7677-7687

Released	2002-07-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Vaccinia virus
Macromolecule	VP39 (protein)
Unique Ligands	M7G, SAH

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1LUZ \| pdb_00001luz	Download File View File

Crystal Structure of the K3L Protein From Vaccinia Virus (Wisconsin Strain)

Dar, A.C., Sicheri, F.

(2002) Mol Cell 10: 295-305

Released	2002-08-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Vaccinia virus WR
Macromolecule	Protein K3 (protein)

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1OYI \| pdb_00001oyi	Download File View File

Solution structure of the Z-DNA binding domain of the vaccinia virus gene E3L

Kahmann, J.D., Wecking, D.A., Putter, V., Lowenhaupt, K., Kim, Y.-G., Schmieder, P., Oschkinat, H., Rich, A., Schade, M.

(2004) Proc Natl Acad Sci U S A 101: 2712-2717

Released	2004-03-09
Method	SOLUTION NMR
Organisms	Vaccinia virus
Macromolecule	double-stranded RNA-binding protein (protein)

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1P39 \| pdb_00001p39	Download File View File

DC26 MUTANT OF VACCINIA VIRUS PROTEIN VP39 IN COMPLEX WITH S-ADENOSYLHOMOCYSTEINE AND M7G(5')PPPG

Hodel, A.E., Gershon, P.D., Quiocho, F.A.

(1997) Nat Struct Biol 4: 350-354

Released	1997-09-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vaccinia virus WR
Macromolecule	VP39 (protein)
Unique Ligands	MGT, SAH

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1V39 \| pdb_00001v39	Download File View File

DC26 MUTANT OF VACCINIA VIRUS PROTEIN VP39 IN COMPLEX WITH S-ADENOSYLHOMOCYSTEINE AND M7G(5')PPPG

Hodel, A.E., Gershon, P.D., Quiocho, F.A.

(1997) Nat Struct Biol 4: 350-354

Released	1997-09-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Vaccinia virus WR
Macromolecule	VP39 (protein)
Unique Ligands	M7G, SAH

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1VCC \| pdb_00001vcc	Download File View File

AMINO TERMINAL 9KDA DOMAIN OF VACCINIA VIRUS DNA TOPOISOMERASE I RESIDUES 1-77, EXPERIMENTAL ELECTRON DENSITY FOR RESIDUES 1-77

Sharma, A., Hanai, R., Mondragon, A.

(1994) Structure 2: 767-777

Released	1996-03-08
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Vaccinia virus WR
Macromolecule	DNA TOPOISOMERASE I (protein)

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1VP3 \| pdb_00001vp3	Download File View File

VACCINIA VIRUS PROTEIN VP39 IN COMPLEX WITH S-ADENOSYLHOMOCYSTEINE

Hodel, A.E., Gershon, P.D., Quiocho, F.A.

(1997) Nat Struct Biol 4: 350-354

Released	1997-09-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Vaccinia virus WR
Macromolecule	VP39 (protein)
Unique Ligands	SAH

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1VP9 \| pdb_00001vp9	Download File View File

DC26 MUTANT OF VACCINIA VIRUS PROTEIN VP39 IN COMPLEX WITH S-ADENOSYLHOMOCYSTEINE

Hodel, A.E., Gershon, P.D., Quiocho, F.A.

(1997) Nat Struct Biol 4: 350-354

Released	1997-09-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Vaccinia virus WR
Macromolecule	VP39 (protein)
Unique Ligands	SAH

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1VPT \| pdb_00001vpt	Download File View File

AS11 VARIANT OF VACCINIA VIRUS PROTEIN VP39 IN COMPLEX WITH S-ADENOSYL-L-METHIONINE

Hodel, A.E., Gershon, P.D., Shi, X., Quiocho, F.A.

(1996) Cell 85: 247-256

Released	1996-08-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Vaccinia virus WR
Macromolecule	VP39 (protein)
Unique Ligands	SAM

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1VVC \| pdb_00001vvc	Download File View File

C-TERMINAL HALF OF VACCINIA VIRUS COMPLEMENT CONTROL PROTEIN, NMR, MINIMIZED AVERAGE STRUCTURE

Wiles, A., Campbell, I.D., Barlow, P.N.

(1997) J Mol Biology 272: 253-265

Released	1997-12-03
Method	SOLUTION NMR
Organisms	Vaccinia virus
Macromolecule	VACCINIA VIRUS COMPLEMENT CONTROL PROTEIN (protein)

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1VVD \| pdb_00001vvd	Download File View File

C-TERMINAL HALF OF VACCINIA VIRUS COMPLEMENT CONTROL PROTEIN, NMR, 21 STRUCTURES

Wiles, A., Campbell, I.D., Barlow, P.N.

(1997) J Mol Biology 272: 253-265

Released	1997-12-03
Method	SOLUTION NMR
Organisms	Vaccinia virus
Macromolecule	VACCINIA VIRUS COMPLEMENT CONTROL PROTEIN (protein)

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1VVE \| pdb_00001vve	Download File View File

C-TERMINAL HALF OF VACCINIA VIRUS COMPLEMENT CONTROL PROTEIN, NMR, 21 STRUCTURES

Wiles, A., Campbell, I.D., Barlow, P.N.

(1997) J Mol Biology 272: 253-265

Released	1997-12-03
Method	SOLUTION NMR
Organisms	Vaccinia virus
Macromolecule	VACCINIA VIRUS COMPLEMENT CONTROL PROTEIN (protein)

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1YPY \| pdb_00001ypy	Download File View File

Crystal Structure of Vaccinia Virus L1 protein

Su, H.P., Garman, S.C., Allison, T.J., Fogg, C., Moss, B., Garboczi, D.N.

(2005) Proc Natl Acad Sci U S A 102: 4240-4245

Released	2005-03-01
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Vaccinia virus
Macromolecule	Virion membrane protein (protein)

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2FFK \| pdb_00002ffk	Download File View File

Solution structure of the complex between poxvirus-encoded CC chemokine inhibitor vCCI and human MIP-1beta, minimized average structure

Zhang, L.

(2006) Proc Natl Acad Sci U S A 103: 13985-13990

Released	2006-08-22
Method	SOLUTION NMR
Organisms	Homo sapiens Rabbitpox virus
Macromolecule	Small inducible cytokine A4 (protein) rabbitpox encoded CC chemokine inhibitor (protein)

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2FIN \| pdb_00002fin	Download File View File

Solution Structure of the complex between poxvirus-encoded CC chemokine inhibitor vCCI and human MIP-1beta, ensemble structure

Zhang, L.

(2006) Proc Natl Acad Sci U S A 103: 13985-13990

Released	2006-08-22
Method	SOLUTION NMR
Organisms	Homo sapiens Rabbitpox virus
Macromolecule	Small inducible cytokine A4 (protein) rabbitpox encoded CC chemokine inhibitor (protein)