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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Vibrio cholerae"

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Search Summary

This query matches 779 Structures.

Refinements

Structure Determination Methodology

experimental (779)

Scientific Name of Source Organism

	Vibrio cholerae (405)
	Vibrio cholerae O1 biovar El Tor str. N16961 (234)
	Vibrio cholerae O395 (70)
	synthetic construct (22)
	Vibrio cholerae O1 (13)
	Vibrio cholerae MJ-1236 (12)
	Vibrio cholerae O1 biovar El Tor (11)
	Vibrio cholerae O1 str. NHCC-010F (8)
	Homo sapiens (6)
	Vibrio cholerae M66-2 (5)

More...

Taxonomy

	Bacteria (779)
	other sequences (22)
	Eukaryota (13)
	Duplodnaviria (2)
	Riboviria (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (701)
	ELECTRON MICROSCOPY (66)
	SOLUTION NMR (12)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (776)
	DNA (29)
	RNA (22)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (68)
	1.5 - 2.0 (250)
	2.0 - 2.5 (234)
	2.5 - 3.0 (123)
	3.0 - 3.5 (57)
	3.5 - 4.0 (20)
	4.0 - 4.5 (8)
	> 4.5 (7)

Release Date

	1995 - 1999 (9)
	2000 - 2004 (44)
	2005 - 2009 (106)
	2010 - 2014 (221)
	2015 - 2019 (197)
	2020 - 2024 (194)
	2025 - 2029 (8)

Enzyme Classification Name

	Transferases (150)
	Hydrolases (111)
	Translocases (30)
	Oxidoreductases (48)
	Lyases (28)
	Isomerases (14)
	Ligases (14)

Membrane Protein Annotation

	PDBTM (59)
	MemProtMD (45)
	OPM (31)
	mpstruc (31)

Symmetry Type

	Cyclic (388)
	Asymmetric (331)
	Dihedral (90)
	Helical (5)
	Tetrahedral (4)
	Octahedral (2)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (164)
	Alpha and beta proteins (a+b) (113)
	All beta proteins (62)
	Artifacts (111)
	All alpha proteins (14)
	Membrane and cell surface proteins and peptides (8)
	Multi-domain proteins (alpha and beta) (3)

AllSelected

1 to 25 of 779 Structures

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1BED \| pdb_00001bed	Download File View File

STRUCTURE OF DISULFIDE OXIDOREDUCTASE

Hu, S.-H., Martin, J.L.

(1997) J Mol Biology 268: 137-146

Released	1997-10-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vibrio cholerae
Macromolecule	DSBA OXIDOREDUCTASE (protein)

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1CHP \| pdb_00001chp	Download File View File

SURPRISING LEADS FOR A CHOLERA TOXIN RECEPTOR BINDING ANTAGONIST; CRYSTALLOGRAPHIC STUDIES OF CTB MUTANTS

Merritt, E.A., Hol, W.G.J.

(1995) Structure 3: 561-570

Released	1996-03-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vibrio cholerae
Macromolecule	CHOLERA TOXIN B PENTAMER (protein)
Unique Ligands	CL

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1CHQ \| pdb_00001chq	Download File View File

SURPRISING LEADS FOR A CHOLERA TOXIN RECEPTOR BINDING ANTAGONIST; CRYSTALLOGRAPHIC STUDIES OF CTB MUTANTS

Merritt, E.A., Hol, W.G.J.

(1995) Structure 3: 561-570

Released	1996-03-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Vibrio cholerae
Macromolecule	CHOLERA TOXIN B PENTAMER (protein)

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1CT1 \| pdb_00001ct1	Download File View File

CHOLERA TOXIN B-PENTAMER MUTANT G33R BOUND TO RECEPTOR PENTASACCHARIDE

Merritt, E.A., Hol, W.G.J.

(1997) Protein Sci 6: 1516-1528

Released	1997-10-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Vibrio cholerae
Macromolecule	CHOLERA TOXIN (protein)
Unique Ligands	CL
Unique branched monosaccharides	BGC, GAL, NGA, SIA

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1EEI \| pdb_00001eei	Download File View File

CHOLERA TOXIN B-PENTAMER COMPLEXED WITH METANITROPHENYL-ALPHA-D-GALACTOSE

Merritt, E.A., Hol, W.G.J.

(2001) Acta Crystallogr D Biol Crystallogr 57: 201-212

Released	2000-02-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vibrio cholerae
Macromolecule	PROTEIN (CHOLERA TOXIN B) (protein)
Unique Ligands	GAA

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1FGB \| pdb_00001fgb	Download File View File

TOXIN

Zhang, R.-G., Westbrook, E.

(1995) J Mol Biology 251: 550-562

Released	1996-12-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Vibrio cholerae 569B
Macromolecule	CHOLERA TOXIN B SUBUNIT PENTAMER (protein)

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1G8Z \| pdb_00001g8z	Download File View File

HIS57ALA MUTANT OF CHOLERA TOXIN B-PENATMER

Aman, A.T., Fraser, S., Merritt, E.A., Rodigherio, C., Kenny, M.

(2001) Proc Natl Acad Sci U S A 98: 8536-8541

Released	2001-07-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vibrio cholerae
Macromolecule	CHOLERA TOXIN B PROTEIN (protein)
Unique Ligands	GAL

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1JR0 \| pdb_00001jr0	Download File View File

CHOLERA TOXIN B-PENTAMER WITH LIGAND BMSC-0011

Merritt, E.A., Hol, W.G.J.

(2002) Chem Biol 9: 215-224

Released	2002-05-08
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Vibrio cholerae
Macromolecule	cholera toxin B subunit (protein)
Unique Ligands	A24

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1KIT \| pdb_00001kit	Download File View File

VIBRIO CHOLERAE NEURAMINIDASE

Taylor, G.L., Crennell, S.J., Garman, E.F., Vimr, E.R., Laver, W.G.

(1994) Structure 2: 535-544

Released	1997-06-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Vibrio cholerae
Macromolecule	SIALIDASE (protein)
Unique Ligands	CA

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1L5A \| pdb_00001l5a	Download File View File

Crystal Structure of VibH, an NRPS Condensation Enzyme

Keating, T.A., Marshall, C.G., Walsh, C.T., Keating, A.E.

(2002) Nat Struct Biol 9: 522-526

Released	2002-06-26
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Vibrio cholerae
Macromolecule	amide synthase (protein)

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1LLR \| pdb_00001llr	Download File View File

CHOLERA TOXIN B-PENTAMER WITH LIGAND BMSC-0012

Merritt, E.A., Hol, W.G.J.

(2002) J Am Chem Soc 124: 8818-8824

Released	2002-08-14
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Vibrio cholerae
Macromolecule	CHOLERA TOXIN B SUBUNIT (protein)
Unique Ligands	FNG, LNQ

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1MB4 \| pdb_00001mb4	Download File View File

Crystal structure of aspartate semialdehyde dehydrogenase from vibrio cholerae with NADP and S-methyl-l-cysteine sulfoxide

Blanco, J., Moore, R.A., Kabaleeswaran, V., Viola, R.E.

(2003) Protein Sci 12: 27-33

Released	2003-01-07
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Vibrio cholerae
Macromolecule	Aspartate-Semialdehyde Dehydrogenase (protein)
Unique Ligands	CYS, NDP

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1MC4 \| pdb_00001mc4	Download File View File

Crystal Structure of Aspartate-Semialdehyde dehydrogenase from Vibrio Cholerae El Tor

Blanco, J., Moore, R.A., Kabaleeswaran, V., Viola, R.E.

(2003) Protein Sci 12: 27-33

Released	2003-03-18
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Vibrio cholerae
Macromolecule	Aspartate-semialdehyde dehydrogenase (protein)

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1MD2 \| pdb_00001md2	Download File View File

CHOLERA TOXIN B-PENTAMER WITH DECAVALENT LIGAND BMSC-0013

Zhang, Z., Merritt, E.A., Ahn, M., Roach, C., Hol, W.G.J., Fan, E.

(2002) J Am Chem Soc 124: 12991-12998

Released	2002-12-11
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Vibrio cholerae
Macromolecule	CHOLERA TOXIN B SUBUNIT (protein)
Unique Ligands	233, CYN, SQ

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1NXI \| pdb_00001nxi	Download File View File

Solution structure of Vibrio cholerae protein VC0424

Ramelot, T.A., Ni, S., Goldsmith-Fischman, S., Cort, J.R., Honig, B., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

(2003) Protein Sci 12: 1556-1561

Released	2003-07-01
Method	SOLUTION NMR
Organisms	Vibrio cholerae
Macromolecule	conserved hypothetical protein VC0424 (protein)

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1OQV \| pdb_00001oqv	Download File View File

Structure of TcpA, the Type IV pilin subunit from the toxin co-regulated pilus of Vibrio cholerae classical biotype

Craig, L., Tainer, J.A.

(2003) Mol Cell 11: 1139-1150

Released	2003-06-03
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Vibrio cholerae
Macromolecule	toxin-coregulated pilus subunit (protein)
Unique Ligands	GOL

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1OV9 \| pdb_00001ov9	Download File View File

Crystal structure of the N-terminal dimerisation domain of VicH, the H-NS protein from Vibrio cholerae

Cerdan, R., Bloch, V., Arold, S.T.

(2003) J Mol Biology 334: 179-185

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Vibrio cholerae
Macromolecule	VicH protein (protein)

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1P9R \| pdb_00001p9r	Download File View File

Crystal Structure of Vibrio cholerae putative NTPase EpsE

Robien, M.A., Krumm, B.E., Sandkvist, M., Hol, W.G.J.

(2003) J Mol Biology 333: 657-674

Released	2003-10-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Vibrio cholerae
Macromolecule	General secretion pathway protein E (protein)
Unique Ligands	CL, ZN

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1P9W \| pdb_00001p9w	Download File View File

Crystal Structure of Vibrio cholerae putative NTPase EpsE

Robien, M.A., Krumm, B.E., Sandkvist, M., Hol, W.G.J.

(2003) J Mol Biology 333: 657-674

Released	2003-10-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Vibrio cholerae
Macromolecule	General secretion pathway protein E (protein)
Unique Ligands	ANP, ZN

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1PZJ \| pdb_00001pzj	Download File View File

Cholera Toxin B-Pentamer Complexed With Nitrophenyl Galactoside 5

Mitchell, D.D., Pickens, J.C., Korotkov, K., Fan, E., Hol, W.G.J.

(2004) Bioorg Med Chem 12: 907-920

Released	2004-03-09
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Vibrio cholerae
Macromolecule	Cholera Toxin B Subunit (protein)
Unique Ligands	15B, J15

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1PZK \| pdb_00001pzk	Download File View File

Cholera Toxin B-Pentamer Complexed With N-Acyl Phenyl Galactoside 9h

Mitchell, D.D., Pickens, J.C., Korotkov, K., Fan, E., Hol, W.G.J.

(2004) Bioorg Med Chem 12: 907-920

Released	2004-03-09
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Vibrio cholerae
Macromolecule	Cholera Toxin B Subunit (protein)
Unique Ligands	J12

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1R3D \| pdb_00001r3d	Download File View File

Crystal structure of protein VC1974 from Vibrio cholerae, Pfam abhydrolase

Gorman, J., Shapiro, L., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2004-11-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Vibrio cholerae
Macromolecule	conserved hypothetical protein VC1974 (protein)

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1RCV \| pdb_00001rcv	Download File View File

Cholera Toxin B-Pentamer Complexed With Bivalent Nitrophenol-Galactoside Ligand BV1

Pickens, J.C., Mitchell, D.D., Liu, J., Tan, X., Zhang, Z., Verlinde, C.L., Hol, W.G., Fan, E.

(2004) Chem Biol 11: 1205-1215

Released	2004-10-26
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Vibrio cholerae
Macromolecule	cholera toxin B protein (CTB) (protein)
Unique Ligands	BV1

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1RD9 \| pdb_00001rd9	Download File View File

Cholera Toxin B-Pentamer Complexed With Bivalent Nitrophenol-Galactoside Ligand BV2

Pickens, J.C., Mitchell, D.D., Liu, J., Tan, X., Zhang, Z., Verlinde, C.L., Hol, W.G., Fan, E.

(2004) Chem Biol 11: 1205-1215

Released	2004-10-26
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Vibrio cholerae
Macromolecule	cholera toxin B protein (CTB) (protein)
Unique Ligands	BV2, P6G, TRS

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1RDP \| pdb_00001rdp	Download File View File

Cholera Toxin B-Pentamer Complexed With Bivalent Nitrophenol-Galactoside Ligand BV3

Pickens, J.C., Mitchell, D.D., Liu, J., Tan, X., Zhang, Z., Verlinde, C.L., Hol, W.G., Fan, E.

(2004) Chem Biol 11: 1205-1215

Released	2004-10-26
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Vibrio cholerae
Macromolecule	cholera toxin B protein (CTB) (protein)
Unique Ligands	BV3, PGE, TRS

1 to 25 of 779 Structures

Page 1 of 32

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BED | pdb_00001bed

1CHP | pdb_00001chp

1CHQ | pdb_00001chq

1CT1 | pdb_00001ct1

1EEI | pdb_00001eei

1FGB | pdb_00001fgb

1G8Z | pdb_00001g8z

1JR0 | pdb_00001jr0

1KIT | pdb_00001kit

1L5A | pdb_00001l5a

1LLR | pdb_00001llr

1MB4 | pdb_00001mb4

1MC4 | pdb_00001mc4

1MD2 | pdb_00001md2

1NXI | pdb_00001nxi

1OQV | pdb_00001oqv

1OV9 | pdb_00001ov9

1P9R | pdb_00001p9r

1P9W | pdb_00001p9w

1PZJ | pdb_00001pzj

1PZK | pdb_00001pzk

1R3D | pdb_00001r3d

1RCV | pdb_00001rcv

1RD9 | pdb_00001rd9

1RDP | pdb_00001rdp