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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Xenopus laevis"

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Search Summary

This query matches 642 Structures.

Refinements

Structure Determination Methodology

experimental (642)

Scientific Name of Source Organism

	Xenopus laevis (642)
	Homo sapiens (231)
	synthetic construct (202)
	Saccharomyces cerevisiae S288C (48)
	Saccharomyces cerevisiae (41)
	Mus musculus (21)
	Rattus norvegicus (19)
	Sus scrofa (14)
	Xenopus tropicalis (8)
	Escherichia coli (5)

More...

Taxonomy

	Eukaryota (642)
	other sequences (204)
	Bacteria (14)
	Eukaryota (eukaryotes) (4)
	Varidnaviria (3)
	unclassified sequences (3)
	Duplodnaviria (2)
	Riboviria (2)

Experimental Method

	ELECTRON MICROSCOPY (314)
	X-RAY DIFFRACTION (277)
	SOLUTION NMR (50)
	SOLID-STATE NMR (1)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (642)
	DNA (336)
	RNA (21)
	NA-hybrid (7)

Refinement Resolution (Å)

	1.0 - 1.5 (14)
	1.5 - 2.0 (52)
	2.0 - 2.5 (68)
	2.5 - 3.0 (128)
	3.0 - 3.5 (147)
	3.5 - 4.0 (63)
	4.0 - 4.5 (38)
	> 4.5 (81)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (19)
	2000 - 2004 (39)
	2005 - 2009 (53)
	2010 - 2014 (89)
	2015 - 2019 (151)
	2020 - 2024 (263)
	2025 - 2029 (27)

Enzyme Classification Name

	Transferases (142)
	Hydrolases (116)
	Isomerases (11)
	Ligases (13)
	Oxidoreductases (5)
	Lyases (9)
	Translocases (1)

Membrane Protein Annotation

	mpstruc (44)
	PDBTM (37)
	MemProtMD (19)
	OPM (21)

Symmetry Type

	Asymmetric (443)
	Cyclic (199)
	Dihedral (6)
	Helical (3)

SCOP Classification

	All alpha proteins (100)
	All beta proteins (26)
	Alpha and beta proteins (a+b) (29)
	Artifacts (19)
	Small proteins (9)
	Alpha and beta proteins (a/b) (9)
	Peptides (6)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 642 Structures

Page 1 of 26

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1AOI \| pdb_00001aoi	Download File View File

COMPLEX BETWEEN NUCLEOSOME CORE PARTICLE (H3,H4,H2A,H2B) AND 146 BP LONG DNA FRAGMENT

Luger, K., Maeder, A.W., Richmond, R.K., Sargent, D.F., Richmond, T.J.

(1997) Nature 389: 251-260

Released	1998-09-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Xenopus laevis
Macromolecule	HISTONE H2A (protein) HISTONE H2B (protein) HISTONE H3 (protein) HISTONE H4 (protein) PALINDROMIC 146 BP DNA REPEAT 8/9 FROM HUMAN X-CHROMOSOME ALPHA SATELLITE DNA (nucleic acid)
Unique Ligands	MN

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1CFC \| pdb_00001cfc	Download File View File

CALCIUM-FREE CALMODULIN

Kuboniwa, H., Tjandra, N., Grzesiek, S., Ren, H., Klee, C.B., Bax, A.

(1995) Nat Struct Biol 2: 768-776

Released	1995-12-07
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	CALMODULIN (protein)

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1CFD \| pdb_00001cfd	Download File View File

CALCIUM-FREE CALMODULIN

Kuboniwa, H., Tjandra, N., Grzesiek, S., Ren, H., Klee, C.B., Bax, A.

(1995) Nat Struct Biol 2: 768-776

Released	1995-12-07
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	CALMODULIN (protein)

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1CFF \| pdb_00001cff	Download File View File

NMR SOLUTION STRUCTURE OF A COMPLEX OF CALMODULIN WITH A BINDING PEPTIDE OF THE CA2+-PUMP

Elshorst, B., Hennig, M., Foersterling, H., Diener, A., Maurer, M., Schulte, P., Schwalbe, H., Krebs, J., Schmid, H., Vorherr, T., Carafoli, E., Griesinger, C.

(1999) Biochemistry 38: 12320-12332

Released	1999-09-24
Method	SOLUTION NMR
Organisms	Homo sapiens Xenopus laevis
Macromolecule	CALCIUM PUMP (protein) CALMODULIN (protein)
Unique Ligands	CA

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1CKK \| pdb_00001ckk	Download File View File

CALMODULIN/RAT CA2+/CALMODULIN DEPENDENT PROTEIN KINASE FRAGMENT

Osawa, M., Tokumitsu, H., Swindells, M.B., Kurihara, H., Orita, M., Shibanuma, T., Furuya, T., Ikura, M.

(1999) Nat Struct Biol 6: 819-824

Released	1999-09-10
Method	SOLUTION NMR
Organisms	Rattus norvegicus Xenopus laevis
Macromolecule	Calcium/calmodulin-dependent protein kinase kinase 1 (protein) Calmodulin-1 (protein)
Unique Ligands	CA

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1D9L \| pdb_00001d9l	Download File View File

SOLUTION STRUCTURE OF CECROPIN A(1-8)-MAGAININ 2 HYBRID PEPTIDE ANALOGUE(P1)

Oh, D., Kim, Y.

(1999) J Pept Res 53: 578-589

Released	1999-11-12
Method	SOLUTION NMR
Organisms	Hyalophora cecropia Xenopus laevis
Macromolecule	CECROPIN A(1-8)-MAGAININ 2 HYBRID PEPTIDE ANALOGUE (protein)

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1D9M \| pdb_00001d9m	Download File View File

SOLUTION STRUCTURE OF CECROPIN A(1-8)-MAGAININ 2 HYBRID PEPTIDE ANALOGUE(P2)

Oh, D., Kim, Y.

(1999) J Pept Res 53: 578-589

Released	1999-11-12
Method	SOLUTION NMR
Organisms	Hyalophora cecropia Xenopus laevis
Macromolecule	CECROPIN A(1-8)-MAGAININ 2 HYBRID PEPTIDE ANALOGUE (protein)

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1D9O \| pdb_00001d9o	Download File View File

SOLUTION STRUCTURE OF CECROPIN A(1-8)-MAGAININ 2(1-12) HYBRID PEPTIDE ANALOGUE(P3)

Oh, D., Kim, Y.

(1999) J Pept Res 53: 578-589

Released	1999-11-12
Method	SOLUTION NMR
Organisms	Hyalophora cecropia Xenopus laevis
Macromolecule	CECROPIN A(1-8)-MAGAININ 2 HYBRID PEPTIDE ANALOGUE (protein)

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1D9P \| pdb_00001d9p	Download File View File

SOLUTION STRUCTURE OF CECROPIN A(1-8)-MAGAININ 2(1-12) HYBRID PEPTIDE ANALOGUE(P4)

Oh, D., Kim, Y.

(1999) J Pept Res 53: 578-589

Released	1999-11-12
Method	SOLUTION NMR
Organisms	Hyalophora cecropia Xenopus laevis
Macromolecule	CECROPIN A(1-8)-MAGAININ 2 HYBRID PEPTIDE ANALOGUE (protein)

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1DI2 \| pdb_00001di2	Download File View File

CRYSTAL STRUCTURE OF A DSRNA-BINDING DOMAIN COMPLEXED WITH DSRNA: MOLECULAR BASIS OF DOUBLE-STRANDED RNA-PROTEIN INTERACTIONS

Ryter, J.M., Schultz, S.C.

(1998) EMBO J 17: 7505-7513

Released	1999-12-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Xenopus laevis
Macromolecule	DOUBLE STRANDED RNA BINDING PROTEIN A (protein) RNA (5'-R(GPGPCPGPCPGPCPGPCPC)-3') (nucleic acid)

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1DMO \| pdb_00001dmo	Download File View File

CALMODULIN, NMR, 30 STRUCTURES

Zhang, M., Tanaka, T., Ikura, M.

(1995) Nat Struct Biol 2: 758-767

Released	1996-08-01
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	CALMODULIN (protein)

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1EE5 \| pdb_00001ee5	Download File View File

YEAST KARYOPHERIN (IMPORTIN) ALPHA IN A COMPLEX WITH A NUCLEOPLASMIN NLS PEPTIDE

Conti, E.

(2000) Structure 8: 329-338

Released	2000-03-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae Xenopus laevis
Macromolecule	KARYOPHERIN ALPHA (protein) NUCLEOPLASMIN (protein)

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1F66 \| pdb_00001f66	Download File View File

2.6 A CRYSTAL STRUCTURE OF A NUCLEOSOME CORE PARTICLE CONTAINING THE VARIANT HISTONE H2A.Z

Suto, R.K., Clarkson, M.J., Tremethick, D.J., Luger, K.

(2000) Nat Struct Biol 7: 1121-1124

Released	2000-11-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Mus musculus Xenopus laevis
Macromolecule	HISTONE H2A.Z (protein) HISTONE H2B (protein) HISTONE H3 (protein) HISTONE H4 (protein) PALINDROMIC 146 BASE PAIR DNA FRAGMENT (nucleic acid)
Unique Ligands	MN

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1F70 \| pdb_00001f70	Download File View File

REFINED SOLUTION STRUCTURE OF CALMODULIN N-TERMINAL DOMAIN

Chou, J., Li, S., Bax, A.

(2000) J Biomol NMR 18: 217-227

Released	2000-09-22
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	CALMODULIN (protein)

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1F71 \| pdb_00001f71	Download File View File

REFINED SOLUTION STRUCTURE OF CALMODULIN C-TERMINAL DOMAIN

Chou, J., Li, S., Bax, A.

(2000) J Biomol NMR 18: 217-227

Released	2000-09-22
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	CALMODULIN (protein)

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1FRE \| pdb_00001fre	Download File View File

XNF7 BBOX, DEVELOPMENTAL PROTEIN, PH 7.5, 30 C, WITH ZINC, NMR, 1 STRUCTURE

Borden, K.L.B., Freemont, P.S.

(1995) EMBO J 14: 5947-5956

Released	1997-02-12
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	NUCLEAR FACTOR XNF7 (protein)
Unique Ligands	ZN

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1G3J \| pdb_00001g3j	Download File View File

CRYSTAL STRUCTURE OF THE XTCF3-CBD/BETA-CATENIN ARMADILLO REPEAT COMPLEX

Graham, T.A., Weaver, C., Mao, F., Kimelman, D., Xu, W.

(2000) Cell 103: 885-896

Released	2000-12-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	BETA-CATENIN ARMADILLO REPEAT REGION (protein) TCF3-CBD (CATENIN BINDING DOMAIN) (protein)

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1IQ5 \| pdb_00001iq5	Download File View File

Calmodulin/nematode CA2+/Calmodulin dependent kinase kinase fragment

Kurokawa, H., Osawa, M., Kurihara, H., Katayama, N., Tokumitsu, H., Swindells, M.B., Kainosho, M., Ikura, M.

(2001) J Mol Biology 312: 59-68

Released	2001-09-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Caenorhabditis elegans Xenopus laevis
Macromolecule	CA2+/CALMODULIN DEPENDENT KINASE KINASE (protein) CALMODULIN (protein)
Unique Ligands	CA

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1J7X \| pdb_00001j7x	Download File View File

CRYSTAL STRUCTURE OF A FUNCTIONAL UNIT OF INTERPHOTORECEPTOR RETINOID-BINDING PROTEIN (IRBP)

Loew, A., Gonzalez-Fernandez, F.

(2002) Structure 10: 43-49

Released	2002-02-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Xenopus laevis
Macromolecule	INTERPHOTORECEPTOR RETINOID-BINDING PROTEIN (protein)

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1K5J \| pdb_00001k5j	Download File View File

The Crystal Structure of Nucleoplasmin-Core

Dutta, S., Akey, I.V., Dingwall, C., Hartman, K.L., Laue, T., Nolte, R.T., Head, J.F., Akey, C.W.

(2001) Mol Cell 8: 841-853

Released	2001-11-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Xenopus laevis
Macromolecule	Nucleoplasmin Core (protein)

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1KX3 \| pdb_00001kx3	Download File View File

X-Ray Structure of the Nucleosome Core Particle, NCP146, at 2.0 A Resolution

Davey, C.A., Sargent, D.F., Luger, K., Maeder, A.W., Richmond, T.J.

(2002) J Mol Biology 319: 1097-1113

Released	2002-12-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	histone H2A.1 (protein) histone H2B.2 (protein) histone H3 (protein) histone H4 (protein) DNA (5'(ATCAATATCCACCTGCAGATTCTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGAATTCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGAATCTGCAGGTGGATATTGAT)3') (nucleic acid)
Unique Ligands	MN

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1KX4 \| pdb_00001kx4	Download File View File

X-Ray Structure of the Nucleosome Core Particle, NCP146b, at 2.6 A Resolution

Davey, C.A., Sargent, D.F., Luger, K., Maeder, A.W., Richmond, T.J.

(2002) J Mol Biology 319: 1097-1113

Released	2002-12-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	histone H2A.1 (protein) histone H2B.2 (protein) histone H3 (protein) histone H4 (protein) DNA (5'(ATCTCCAAATATCCCTTGCGGATCGTAGAAAAAGTGTGTCAAACTGCGCTATCAAAGGGAAACTTCAACTGAATTCAGTTGAAGTTTCCCTTTGATAGCGCAGTTTGACACACTTTTTCTACGATCCGCAAGGGATATTTGGAGAT)3') (nucleic acid)
Unique Ligands	CL, MN

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1KX5 \| pdb_00001kx5	Download File View File

X-Ray Structure of the Nucleosome Core Particle, NCP147, at 1.9 A Resolution

Davey, C.A., Sargent, D.F., Luger, K., Maeder, A.W., Richmond, T.J.

(2002) J Mol Biology 319: 1097-1113

Released	2002-12-25
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	CL, MN

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1L3W \| pdb_00001l3w	Download File View File

C-cadherin Ectodomain

Boggon, T.J., Murray, J., Chappuis-Flament, S., Wong, E., Gumbiner, B.M., Shapiro, L.

(2002) Science 296: 1308-1313

Released	2002-04-26
Method	X-RAY DIFFRACTION 3.08 Å
Organisms	Xenopus laevis
Macromolecule	EP-cadherin (protein)
Unique Ligands	CA, NAG, NDG

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1L6O \| pdb_00001l6o	Download File View File

XENOPUS DISHEVELLED PDZ DOMAIN

Cheyette, B.N.R., Waxman, J.S., Miller, J.R., Takemaru, K.-I., Sheldahl, L.C., Khlebtsova, N., Fox, E.P., Earnest, T., Moon, R.T.

(2002) Dev Cell 2: 449-461

Released	2003-06-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Xenopus laevis
Macromolecule	Dapper 1 (protein) Segment polarity protein dishevelled homolog DVL-2 (protein)

1 to 25 of 642 Structures

Page 1 of 26

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AOI | pdb_00001aoi

1CFC | pdb_00001cfc

1CFD | pdb_00001cfd

1CFF | pdb_00001cff

1CKK | pdb_00001ckk

1D9L | pdb_00001d9l

1D9M | pdb_00001d9m

1D9O | pdb_00001d9o

1D9P | pdb_00001d9p

1DI2 | pdb_00001di2

1DMO | pdb_00001dmo

1EE5 | pdb_00001ee5

1F66 | pdb_00001f66

1F70 | pdb_00001f70

1F71 | pdb_00001f71

1FRE | pdb_00001fre

1G3J | pdb_00001g3j

1IQ5 | pdb_00001iq5

1J7X | pdb_00001j7x

1K5J | pdb_00001k5j

1KX3 | pdb_00001kx3

1KX4 | pdb_00001kx4

1KX5 | pdb_00001kx5

1L3W | pdb_00001l3w

1L6O | pdb_00001l6o