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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Xylella fastidiosa 9a5c"

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This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

Xylella fastidiosa 9a5c (12)

Taxonomy

Bacteria (12)

Experimental Method

	X-RAY DIFFRACTION (11)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (1)
	2015 - 2019 (7)

Enzyme Classification Name

	Hydrolases (4)
	Oxidoreductases (1)

Symmetry Type

	Cyclic (7)
	Asymmetric (4)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a/b) (5)
	Alpha and beta proteins (a+b) (4)
	All alpha proteins (1)
	All beta proteins (1)

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1 to 12 of 12 Structures

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1ZB8 \| pdb_00001zb8	Download File View File

Crystal structure of Xylella fastidiosa organic peroxide resistance protein

Oliveira, M.A., Guimaraes, B.G., Cussiol, J.R., Medrano, F.J., Vidigal, S.A., Gozzo, F.C., Netto, L.E.

(2006) J Mol Biology 359: 433-445

Released	2006-05-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Xylella fastidiosa 9a5c
Macromolecule	organic hydroperoxide resistance protein (protein)
Unique Ligands	PE4

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1ZB9 \| pdb_00001zb9	Download File View File

Crystal structure of Xylella fastidiosa organic peroxide resistance protein

Oliveira, M.A., Guimaraes, B.G., Cussiol, J.R., Medrano, F.J., Vidigal, S.A., Gozzo, F.C., Netto, L.E.

(2006) J Mol Biology 359: 433-445

Released	2006-04-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Xylella fastidiosa 9a5c
Macromolecule	organic hydroperoxide resistance protein (protein)
Unique Ligands	PE4

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2JR1 \| pdb_00002jr1	Download File View File

Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from the phytopathogen Xylella fastidiosa.

Rosselli, L.K., Sforca, M.L., Souza, A.P., Zeri, A.C.

To be published

Released	2007-09-25
Method	SOLUTION NMR
Organisms	Xylella fastidiosa 9a5c
Macromolecule	Virulence regulator (protein)

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2NUH \| pdb_00002nuh	Download File View File

Crystal structure of CutA from the phytopathgen bacterium Xylella fastidiosa

Medrano, F.J., Benedetti, C.E.

To be published

Released	2007-01-03
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Xylella fastidiosa 9a5c
Macromolecule	Periplasmic divalent cation tolerance protein (protein)
Unique Ligands	IMD

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2X64 \| pdb_00002x64	Download File View File

GLUTATHIONE-S-TRANSFERASE FROM XYLELLA FASTIDIOSA

Muniz, J.R.C., Rodrigues, N.C., Bleicher, L., Travensolo, R.F., Garcia, W.

To be published

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Xylella fastidiosa 9a5c
Macromolecule	GLUTATHIONE-S-TRANSFERASE (protein)
Unique Ligands	CL, GSH

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4XX2 \| pdb_00004xx2	Download File View File

Ohr from Xylella fastidiosa in oxidized state

Alegria, T.G.P., Discola, K.F., Cussiol, J.R.R., Oliveira, M.A., Netto, L.E.S.

To be published

Released	2016-02-03
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Xylella fastidiosa 9a5c
Macromolecule	Organic hydroperoxide resistance protein (protein)

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5DYR \| pdb_00005dyr	Download File View File

Structure of virulence-associated protein D (VapD) from Xylella fastidiosa

Kochneva, M.V., dos Santos, M.L., dos Santos, C.A., de Souza, A.P., Polikarpov, I., Aparicio, R., Golubev, A.M.

To be published

Released	2016-01-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Xylella fastidiosa 9a5c
Macromolecule	Virulence-associated protein D (protein)

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5J7N \| pdb_00005j7n	Download File View File

Crystal structure of a small heat-shock protein from Xylella fastidiosa reveals a distinct high order structure

Fonseca, E.M.B., Scorsato, V., dos Santos, C.A., Tomazini Jr., A., Aparicio, R., Polikarpov, I.

(2017) Acta Crystallogr F Struct Biol Commun 73: 222-227

Released	2017-04-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Xylella fastidiosa 9a5c
Macromolecule	Low molecular weight heat shock protein (protein)

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5KSQ \| pdb_00005ksq	Download File View File

Stationary phase survival protein E (SurE) from Xylella fastidiosa

Machado, A.T.P., Fonseca, E.M.B., Dos Reis, M.A., Saraiva, A.M., Dos Santos, C.A., De Toledo, M.A., Polikarpov, I., De Souza, A.P., Aparicio, R., Iulek, J.

(2017) Proteins 85: 1931-1943

Released	2017-07-19
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Xylella fastidiosa 9a5c
Macromolecule	5'-nucleotidase SurE (protein)
Unique Ligands	IOD, MN, PO4

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5KSR \| pdb_00005ksr	Download File View File

Stationary phase survival protein E (SurE) from Xylella fastidiosa - XFSurE-TB (Tetramer Bigger).

Machado, A.T.P., Fonseca, E.M.B., Dos Reis, M.A., Saraiva, A.M., Dos Santos, C.A., De Toledo, M.A., Polikarpov, I., De Souza, A.P., De Aparicio, R., Iulek, J.

(2017) Proteins 85: 1931-1943

Released	2017-07-19
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Xylella fastidiosa 9a5c
Macromolecule	5'-nucleotidase SurE (protein)
Unique Ligands	CL, IOD, MN

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5KSS \| pdb_00005kss	Download File View File

Stationary phase survival protein E (SurE) from Xylella fastidiosa - XFSurE-Ds (Dimer Smaller)

Machado, A.T.P., Fonseca, E.M.B., Dos Reis, M.A., Saraiva, A.M., Dos Santos, C.A., De Toledo, A.M.S., Polikarpov, I., De Souza, A.P., Aparicio, R., Iulek, J.

(2017) Proteins 85: 1931-1943

Released	2017-07-19
Method	X-RAY DIFFRACTION 2.82 Å
Organisms	Xylella fastidiosa 9a5c
Macromolecule	5'-nucleotidase SurE (protein)
Unique Ligands	CL, IOD, MN

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5KST \| pdb_00005kst	Download File View File

Stationary phase Survival protein E (SurE) from Xylella fastidiosa- XfSurE-TSAmp (Tetramer Smaller - crystallization with 3'AMP).

Machado, A.T.P., Fonseca, E.M.B., Dos Reis, M.A., Saraiva, A.M., Dos Santos, C.A., De Toledo, M.A.S., Polikarpov, I., De Souza, A.P., Aparicio, R., Iulek, J.

(2017) Proteins 85: 1931-1943

Released	2017-07-19
Method	X-RAY DIFFRACTION 2.759 Å
Organisms	Xylella fastidiosa 9a5c
Macromolecule	5'-nucleotidase SurE (protein)
Unique Ligands	IOD, MN, PO4

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1ZB8 | pdb_00001zb8

Crystal structure of Xylella fastidiosa organic peroxide resistance protein

1ZB9 | pdb_00001zb9

Crystal structure of Xylella fastidiosa organic peroxide resistance protein

2JR1 | pdb_00002jr1

Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from the phytopathogen Xylella fastidiosa.

2NUH | pdb_00002nuh

Crystal structure of CutA from the phytopathgen bacterium Xylella fastidiosa

2X64 | pdb_00002x64

GLUTATHIONE-S-TRANSFERASE FROM XYLELLA FASTIDIOSA

4XX2 | pdb_00004xx2

Ohr from Xylella fastidiosa in oxidized state

5DYR | pdb_00005dyr

Structure of virulence-associated protein D (VapD) from Xylella fastidiosa

5J7N | pdb_00005j7n

Crystal structure of a small heat-shock protein from Xylella fastidiosa reveals a distinct high order structure

5KSQ | pdb_00005ksq

Stationary phase survival protein E (SurE) from Xylella fastidiosa

5KSR | pdb_00005ksr

Stationary phase survival protein E (SurE) from Xylella fastidiosa - XFSurE-TB (Tetramer Bigger).

5KSS | pdb_00005kss

Stationary phase survival protein E (SurE) from Xylella fastidiosa - XFSurE-Ds (Dimer Smaller)

5KST | pdb_00005kst

Stationary phase Survival protein E (SurE) from Xylella fastidiosa- XfSurE-TSAmp (Tetramer Smaller - crystallization with 3'AMP).

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ZB8 | pdb_00001zb8

1ZB9 | pdb_00001zb9

2JR1 | pdb_00002jr1

2NUH | pdb_00002nuh

2X64 | pdb_00002x64

4XX2 | pdb_00004xx2

5DYR | pdb_00005dyr

5J7N | pdb_00005j7n

5KSQ | pdb_00005ksq

5KSR | pdb_00005ksr

5KSS | pdb_00005kss

5KST | pdb_00005kst