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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 1.8.5.4

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Search Summary

This query matches 20,119 Structures.

Refinements

Structure Determination Methodology

experimental (20,119)

Scientific Name of Source Organism

	Homo sapiens (5,785)
	Mus musculus (901)
	Severe acute respiratory syndrome coronavirus 2 (846)
	synthetic construct (750)
	Escherichia coli (610)
	Escherichia coli K-12 (605)
	Saccharomyces cerevisiae S288C (547)
	Rattus norvegicus (315)
	Coxsackievirus A16 (284)
	Bos taurus (280)

More...

Taxonomy

	Eukaryota (10,261)
	Bacteria (7,306)
	Riboviria (1,971)
	other sequences (754)
	Archaea (482)
	Duplodnaviria (181)
	Eukaryota (eukaryotes) (107)
	Monodnaviria (74)
	Varidnaviria (72)
	unclassified sequences (47)

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Experimental Method

	X-RAY DIFFRACTION (20,101)
	NEUTRON DIFFRACTION (17)
	ELECTRON CRYSTALLOGRAPHY (15)
	EPR (1)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (19,832)
	DNA (823)
	RNA (630)
	NA-hybrid (16)

Refinement Resolution (Å)

	0.5 - 1.0 (80)
	1.0 - 1.5 (2,243)
	1.5 - 2.0 (7,500)
	2.0 - 2.5 (5,672)
	2.5 - 3.0 (3,131)
	3.0 - 3.5 (1,136)
	3.5 - 4.0 (264)
	4.0 - 4.5 (55)
	> 4.5 (50)

Release Date

	1975 - 1979 (4)
	1980 - 1984 (10)
	1985 - 1989 (11)
	1990 - 1994 (137)
	1995 - 1999 (591)
	2000 - 2004 (1,379)
	2005 - 2009 (2,907)
	2010 - 2014 (3,968)
	2015 - 2019 (4,749)
	2020 - 2024 (5,969)

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Enzyme Classification Name

	Hydrolases (4,672)
	Transferases (3,487)
	Oxidoreductases (1,710)
	Lyases (838)
	Isomerases (397)
	Ligases (358)
	Translocases (101)

Membrane Protein Annotation

	PDBTM (750)
	MemProtMD (669)
	mpstruc (524)
	OPM (416)

Symmetry Type

	Asymmetric (11,483)
	Cyclic (7,989)
	Dihedral (1,298)
	Helical (34)
	Icosahedral (34)
	Tetrahedral (9)
	Octahedral (7)

SCOP Classification

	Alpha and beta proteins (a/b) (3,384)
	All beta proteins (2,943)
	Alpha and beta proteins (a+b) (2,608)
	All alpha proteins (1,918)
	Artifacts (1,757)
	Multi-domain proteins (alpha and beta) (417)
	Membrane and cell surface proteins and peptides (297)
	Coiled coil proteins (121)
	Small proteins (150)
	Peptides (15)

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AllSelected

1 to 25 of 20,119 Structures

Page 1 of 805

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10GS \| pdb_000010gs	Download File View File

HUMAN GLUTATHIONE S-TRANSFERASE P1-1, COMPLEX WITH TER117

Oakley, A., Parker, M.

(1997) J Mol Biology 274: 84-100

Released	1998-09-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	GLUTATHIONE S-TRANSFERASE P1-1 (protein)
Unique Ligands	MES, VWW

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119D \| pdb_0000119d	Download File View File

CRYSTAL AND MOLECULAR STRUCTURE OF D(CGTAGATCTACG) AT 2.25 ANGSTROMS RESOLUTION

Leonard, G.A., Hunter, W.N.

(1993) J Mol Biology 234: 198-208

Released	1993-10-15
Method	X-RAY DIFFRACTION 2.25 Å
Macromolecule	DNA (5'-D(CPGPTPAPGPAPTPCPTPAPCPG)-3') (nucleic acid)
Unique Ligands	MG

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11GS \| pdb_000011gs	Download File View File

Glutathione s-transferase complexed with ethacrynic acid-glutathione conjugate (form ii)

Oakley, A.J., Lo Bello, M., Mazzetti, A.P., Federici, G., Parker, M.W.

(1997) FEBS Lett 419: 32-36

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	GLUTATHIONE S-TRANSFERASE (protein)
Unique Ligands	EAA, GSH, MES

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12GS \| pdb_000012gs	Download File View File

GLUTATHIONE S-TRANSFERASE COMPLEXED WITH S-NONYL-GLUTATHIONE

Oakley, A.J., Lo Bello, M., Parker, M.W.

(1999) J Mol Biology 291: 913

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	GLUTATHIONE S-TRANSFERASE (protein)
Unique Ligands	0HH, MES

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13GS \| pdb_000013gs	Download File View File

GLUTATHIONE S-TRANSFERASE COMPLEXED WITH SULFASALAZINE

Oakley, A.J., Lo Bello, M., Parker, M.W.

(1999) J Mol Biology 291: 913

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	GLUTATHIONE S-TRANSFERASE (protein)
Unique Ligands	GSH, MES, SAS

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14GS \| pdb_000014gs	Download File View File

GLUTATHIONE S-TRANSFERASE P1-1 APO FORM 1

Oakley, A.J., Lo Bello, M., Ricci, G., Federici, G., Parker, M.W.

(1998) Biochemistry 37: 9912-9917

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	GLUTATHIONE S-TRANSFERASE (protein)
Unique Ligands	MES

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15C8 \| pdb_000015c8	Download File View File

CATALYTIC ANTIBODY 5C8, FREE FAB

Gruber, K., Wilson, I.A.

To be published

Released	1999-03-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	IGG 5C8 FAB (HEAVY CHAIN) (protein) IGG 5C8 FAB (LIGHT CHAIN) (protein)

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165D \| pdb_0000165d	Download File View File

THE STRUCTURE OF A MISPAIRED RNA DOUBLE HELIX AT 1.6 ANGSTROMS RESOLUTION AND IMPLICATIONS FOR THE PREDICTION OF RNA SECONDARY STRUCTURE

Cruse, W., Saludjian, P., Biala, E., Strazewski, P., Prange, T., Kennard, O.

(1994) Proc Natl Acad Sci U S A 91: 4160-4164

Released	1994-08-31
Method	X-RAY DIFFRACTION 1.55 Å
Macromolecule	DNA/RNA (5'-R(GPCPUPUPCPGPGPCP)-D((BRU))-3') (nucleic acid)
Unique Ligands	RHD

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16GS \| pdb_000016gs	Download File View File

GLUTATHIONE S-TRANSFERASE P1-1 APO FORM 3

Oakley, A.J., Lo Bello, M., Ricci, G., Federici, G., Parker, M.W.

(1998) Biochemistry 37: 9912-9917

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	GLUTATHIONE S-TRANSFERASE (protein)
Unique Ligands	MES, SO4

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175L \| pdb_0000175l	Download File View File

PROTEIN FLEXIBILITY AND ADAPTABILITY SEEN IN 25 CRYSTAL FORMS OF T4 LYSOZYME

Baldwin, E., Matthews, B.W.

(1995) J Mol Biology 250: 527-552

Released	1995-07-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)

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17GS \| pdb_000017gs	Download File View File

GLUTATHIONE S-TRANSFERASE P1-1

Oakley, A.J., Lo Bello, M., Parker, M.W.

To be published

Released	1998-12-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	GLUTATHIONE S-TRANSFERASE (protein)
Unique Ligands	GTX, MES

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183D \| pdb_0000183d	Download File View File

X-RAY STRUCTURE OF A DNA DECAMER CONTAINING 7, 8-DIHYDRO-8-OXOGUANINE

Lipscomb, L.A., Peek, M.E., Morningstar, M.L., Verghis, S.M., Miller, E.M., Rich, A., Essigmann, J.M., Williams, L.D.

(1995) Proc Natl Acad Sci U S A 92: 719-723

Released	1995-02-27
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	DNA (5'-D(CPCPAP(8OG)PCPGPCPTPGPG)-3') (nucleic acid)

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18GS \| pdb_000018gs	Download File View File

GLUTATHIONE S-TRANSFERASE P1-1 COMPLEXED WITH 1-(S-GLUTATHIONYL)-2,4-DINITROBENZENE

Oakley, A.J., Lo Bello, M., Ricci, G., Federici, G., Parker, M.W.

(1999) J Mol Biology 291: 913-926

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	GLUTATHIONE S-TRANSFERASE (protein)
Unique Ligands	GDN, MES

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196D \| pdb_0000196d	Download File View File

CRYSTAL STRUCTURE OF C-T-C-T-C-G-A-G-A-G: IMPLICATIONS FOR THE STRUCTURE OF THE HOLLIDAY JUNCTION

Goodsell, D.S., Grzeskowiak, K., Dickerson, R.E.

(1995) Biochemistry 34: 1022-1029

Released	1995-02-27
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	DNA (5'-D(CPTPCPTPCPGPAPGPAPG)-3') (nucleic acid)
Unique Ligands	CA

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19GS \| pdb_000019gs	Download File View File

Glutathione s-transferase p1-1

Oakley, A.J., Lo Bello, M., Parker, M.W.

(1999) J Mol Biology 291: 913-926

Released	1998-12-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	GLUTATHIONE S-TRANSFERASE (protein)
Unique Ligands	BSP, GSH, MES

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1A04 \| pdb_00001a04	Download File View File

THE STRUCTURE OF THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL IN THE MONOCLINIC C2 CRYSTAL FORM

Baikalov, I., Schroder, I., Kaczor-Grzeskowiak, M., Cascio, D., Gunsalus, R.P., Dickerson, R.E.

(1998) Biochemistry 37: 3665-3676

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL (protein)

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1A27 \| pdb_00001a27	Download File View File

HUMAN 17-BETA-HYDROXYSTEROID-DEHYDROGENASE TYPE 1 C-TERMINAL DELETION MUTANT COMPLEXED WITH ESTRADIOL AND NADP+

Mazza, C., Breton, R., Housset, D., Fontecilla-Camps, J.-C.

(1997) Thesis

Released	1998-05-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	17-BETA-HYDROXYSTEROID-DEHYDROGENASE (protein)
Unique Ligands	EST, NAP

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1A2C \| pdb_00001a2c	Download File View File

Structure of thrombin inhibited by AERUGINOSIN298-A from a BLUE-GREEN ALGA

Rios-Steiner, J.L., Murakami, M., Tulinsky, A.

(1998) J Am Chem Soc 120: 597

Released	1998-07-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Hirudo medicinalis Homo sapiens Microcystis aeruginosa
Macromolecule	Aeruginosin 298-A (protein) Hirudin variant-2 (protein) Thrombin heavy chain (protein) Thrombin light chain (protein)
Unique Ligands	NA

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1A2E \| pdb_00001a2e	Download File View File

CRYSTAL STRUCTURE OF A DOUBLE-STRANDED DNA DECAMER CONTAINING A CISPLATIN INTERSTRAND CROSS-LINK ADDUCT

Coste, F., Zelwer, C.

(1999) Nucleic Acids Res 27: 1837-1846

Released	1999-04-12
Method	X-RAY DIFFRACTION 1.63 Å
Macromolecule	DNA (5'-D(CPCPTPCPGPCPTPCPTPC)-3') (nucleic acid) DNA (5'-D(GPAPGPAPGPCPGPAPGPG)-3') (nucleic acid)
Unique Ligands	CPT

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1A2O \| pdb_00001a2o	Download File View File

STRUCTURAL BASIS FOR METHYLESTERASE CHEB REGULATION BY A PHOSPHORYLATION-ACTIVATED DOMAIN

Djordjevic, S., Goudreau, P.N., Xu, Q., Stock, A.M., West, A.H.

(1998) Proc Natl Acad Sci U S A 95: 1381-1386

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	CHEB METHYLESTERASE (protein)

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1A2Y \| pdb_00001a2y	Download File View File

HEN EGG WHITE LYSOZYME, D18A MUTANT, IN COMPLEX WITH MOUSE MONOCLONAL ANTIBODY D1.3

Tsuchiya, D., Mariuzza, R.A.

(1998) Biochemistry 37: 7981-7991

Released	1998-04-29
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Gallus gallus Mus musculus
Macromolecule	IGG1-KAPPA D1.3 FV (HEAVY CHAIN) (protein) IGG1-KAPPA D1.3 FV (LIGHT CHAIN) (protein) LYSOZYME (protein)
Unique Ligands	PO4

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1A3B \| pdb_00001a3b	Download File View File

COMPLEX OF HUMAN ALPHA-THROMBIN WITH THE BIFUNCTIONAL BORONATE INHIBITOR BOROLOG1

Skordalakes, E., Elgendy, S., Dodson, G., Goodwin, C.A., Green, D., Scully, M.F., Freyssinet, J.H., Kakkar, V.V., Deadman, J.

(1998) Biochemistry 37: 14420-14427

Released	1998-06-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) Hirudin (protein)
Unique Ligands	T29

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1A3C \| pdb_00001a3c	Download File View File

PYRR, THE BACILLUS SUBTILIS PYRIMIDINE BIOSYNTHETIC OPERON REPRESSOR, DIMERIC FORM

Tomchick, D.R., Turner, R.J., Switzer, R.W., Smith, J.L.

(1998) Structure 6: 337-350

Released	1998-08-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bacillus subtilis
Macromolecule	PYRIMIDINE OPERON REGULATORY PROTEIN PYRR (protein)
Unique Ligands	SM, SO4

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1A3E \| pdb_00001a3e	Download File View File

COMPLEX OF HUMAN ALPHA-THROMBIN WITH THE BIFUNCTIONAL BORONATE INHIBITOR BOROLOG2

Skordalakes, E., Elgendy, S., Goodwin, C.A., Green, D., Scullly, M.F., Kakkar, V.V., Freyssinet, J.M., Dodson, G., Deadman, J.

(1998) Biochemistry 37: 14420-14427

Released	1998-06-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) Hirudin (protein)
Unique Ligands	T16

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1A3G \| pdb_00001a3g	Download File View File

BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE FROM ESCHERICHIA COLI

Okada, K., Hirotsu, K., Sato, M., Hayashi, H., Kagamiyama, H.

(1997) J Biochem 121: 637-641

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE (protein)
Unique Ligands	PLP

1 to 25 of 20,119 Structures

Page 1 of 805

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

10GS | pdb_000010gs

119D | pdb_0000119d

11GS | pdb_000011gs

12GS | pdb_000012gs

13GS | pdb_000013gs

14GS | pdb_000014gs

15C8 | pdb_000015c8

165D | pdb_0000165d

16GS | pdb_000016gs

175L | pdb_0000175l

17GS | pdb_000017gs

183D | pdb_0000183d

18GS | pdb_000018gs

196D | pdb_0000196d

19GS | pdb_000019gs

1A04 | pdb_00001a04

1A27 | pdb_00001a27

1A2C | pdb_00001a2c

1A2E | pdb_00001a2e

1A2O | pdb_00001a2o

1A2Y | pdb_00001a2y

1A3B | pdb_00001a3b

1A3C | pdb_00001a3c

1A3E | pdb_00001a3e

1A3G | pdb_00001a3g