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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 2.7.7.48

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Search Summary

This query matches 1,214 Structures.

Refinements

Structure Determination Methodology

experimental (1,214)

Scientific Name of Source Organism

	Homo sapiens (132)
	synthetic construct (126)
	Severe acute respiratory syndrome coronavirus 2 (107)
	Hepacivirus hominis (48)
	Hepatitis C virus isolate HC-J4 (46)
	Hepatitis C virus (isolate BK) (39)
	Mus musculus (39)
	Human poliovirus 1 Mahoney (32)
	Enterovirus A71 (30)
	Cystovirus phi6 (26)

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Taxonomy

	Riboviria (1,141)
	Eukaryota (224)
	other sequences (126)
	Bacteria (35)
	Riboviria (RNA viruses and viroids) (8)
	Eukaryota (eukaryotes) (6)

Experimental Method

	X-RAY DIFFRACTION (728)
	ELECTRON MICROSCOPY (480)
	SOLUTION NMR (6)

Polymer Entity Type

	Protein (1,214)
	RNA (350)
	DNA (46)
	NA-hybrid (4)

Refinement Resolution (Å)

	1.0 - 1.5 (14)
	1.5 - 2.0 (182)
	2.0 - 2.5 (284)
	2.5 - 3.0 (294)
	3.0 - 3.5 (249)
	3.5 - 4.0 (101)
	4.0 - 4.5 (31)
	> 4.5 (51)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (47)
	2005 - 2009 (142)
	2010 - 2014 (204)
	2015 - 2019 (238)
	2020 - 2024 (555)
	2025 - 2029 (24)

Enzyme Classification Name

	Hydrolases (629)
	Transferases (1,214)
	Isomerases (12)
	Lyases (10)

Membrane Protein Annotation

	OPM (6)
	PDBTM (1)

Symmetry Type

	Asymmetric (1,006)
	Cyclic (121)
	Icosahedral (102)
	Dihedral (8)
	Helical (1)

SCOP Classification

	Multi-domain proteins (alpha and beta) (295)
	All beta proteins (95)
	Artifacts (104)
	Alpha and beta proteins (a/b) (44)
	Alpha and beta proteins (a+b) (26)
	Small proteins (12)
	Peptides (6)
	All alpha proteins (5)
	Membrane and cell surface proteins and peptides (2)
	Low resolution protein structures (2)

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AllSelected

1 to 25 of 1,214 Structures

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1C2P \| pdb_00001c2p	Download File View File

HEPATITIS C VIRUS NS5B RNA-DEPENDENT RNA POLYMERASE

Lesburg, C.A., Cable, M.B., Ferrari, E., Hong, Z., Mannarino, A.F., Weber, P.C.

(1999) Nat Struct Biol 6: 937-943

Released	2000-04-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Hepacivirus hominis
Macromolecule	RNA-DEPENDENT RNA POLYMERASE (protein)

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1CSJ \| pdb_00001csj	Download File View File

CRYSTAL STRUCTURE OF THE RNA-DEPENDENT RNA POLYMERASE OF HEPATITIS C VIRUS

Bressanelli, S., Tomei, L., Roussel, A., Incitti, I., Vitale, R.L., Mathieu, M., De Francesco, R., Rey, F.A.

(1999) Proc Natl Acad Sci U S A 96: 13034-13039

Released	1999-11-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Hepacivirus hominis
Macromolecule	HEPATITIS C VIRUS RNA POLYMERASE (NS5B) (protein)

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1EZJ \| pdb_00001ezj	Download File View File

CRYSTAL STRUCTURE OF THE MULTIMERIZATION DOMAIN OF THE PHOSPHOPROTEIN FROM SENDAI VIRUS

Tarbouriech, N., Curran, J., Ruigrok, R.W.H., Burmeister, W.P.

(2000) Nat Struct Biol 7: 777-781

Released	2000-09-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Sendai virus (strain Harris)
Macromolecule	NUCLEOCAPSID PHOSPHOPROTEIN (protein)
Unique Ligands	CA, EMC

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1GX5 \| pdb_00001gx5	Download File View File

Hepatitis C Virus RNA Polymerase in Complex with GTP and Manganese

Bressanelli, S., Rey, F.A.

(2002) J Virol 76: 3482

Released	2002-04-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Hepatitis C virus (isolate BK)
Macromolecule	RNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	GTP, MN

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1GX6 \| pdb_00001gx6	Download File View File

Hepatitis C Virus RNA polymerase in complex with UTP and manganese

Bressanelli, S., Rey, F.A.

(2002) J Virol 76: 3482

Released	2002-04-10
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Hepatitis C virus (isolate BK)
Macromolecule	RNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	MN, UTP

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1HAV \| pdb_00001hav	Download File View File

HEPATITIS A VIRUS 3C PROTEINASE

Bergmann, E.M., James, M.N.G.

(1997) J Virol 71: 2436-2448

Released	1996-12-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Hepatovirus A
Macromolecule	HEPATITIS A VIRUS 3C PROTEINASE (protein)
Unique Ligands	CL

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1HHS \| pdb_00001hhs	Download File View File

RNA dependent RNA polymerase from dsRNA bacteriophage phi6

Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

(2001) Nature 410: 235

Released	2001-03-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cystovirus phi6
Macromolecule	RNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	MN

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1HHT \| pdb_00001hht	Download File View File

RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus template

Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

(2001) Nature 410: 235

Released	2001-03-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Cystovirus phi6
Macromolecule	P2 PROTEIN (protein) DNA (5'-(TPTPTPCP*C)-3') (nucleic acid)
Unique Ligands	MN

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1HI0 \| pdb_00001hi0	Download File View File

RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus initiation complex

Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

(2001) Nature 410: 235

Released	2001-03-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Cystovirus phi6
Macromolecule	P2 PROTEIN (protein) DNA (5'-(TPTPTPCP*C)-3') (nucleic acid)
Unique Ligands	GTP, MG, MN

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1HI1 \| pdb_00001hi1	Download File View File

RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus bound NTP

Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

(2001) Nature 410: 235

Released	2001-03-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Cystovirus phi6
Macromolecule	P2 PROTEIN (protein)
Unique Ligands	ATP

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1HI8 \| pdb_00001hi8	Download File View File

RNA dependent RNA polymerase from dsRNA bacteriophage phi6

Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

(2001) Nature 410: 235

Released	2001-03-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Cystovirus phi6
Macromolecule	P2 PROTEIN (protein)
Unique Ligands	MG

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1KHV \| pdb_00001khv	Download File View File

Crystal Structure of Rabbit Hemorrhagic Disease Virus RNA-dependent RNA polymerase complexed with Lu3+

Ng, K.K., Cherney, M.M., Vazquez, A.L., Machin, A., Alonso, J.M., Parra, F., James, M.N.

(2002) J Biological Chem 277: 1381-1387

Released	2002-01-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rabbit hemorrhagic disease virus
Macromolecule	RNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	LU

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1KHW \| pdb_00001khw	Download File View File

Crystal Structure of Rabbit Hemorrhagic Disease Virus RNA-dependent RNA polymerase complexed with Mn2+

Ng, K.K., Cherney, M.M., Vazquez, A.L., Machin, A., Alonso, J.M., Parra, F., James, M.N.

(2002) J Biological Chem 277: 1381-1387

Released	2002-01-16
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Rabbit hemorrhagic disease virus
Macromolecule	RNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	MN

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1L9K \| pdb_00001l9k	Download File View File

dengue methyltransferase

Egloff, M.P., Benarroch, D., Selisko, B., Romette, J.L., Canard, B.

(2002) EMBO J 21: 2757-2768

Released	2003-03-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	dengue virus type 2
Macromolecule	RNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	SAH, SO4

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1MUK \| pdb_00001muk	Download File View File

reovirus lambda3 native structure

Tao, Y., Farsetta, D.L., Nibert, M.L., Harrison, S.C.

(2002) Cell 111: 733-745

Released	2002-12-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Reovirus sp.
Macromolecule	MINOR CORE PROTEIN LAMBDA 3 (protein)

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1MWH \| pdb_00001mwh	Download File View File

REOVIRUS POLYMERASE LAMBDA3 BOUND TO MRNA CAP ANALOG

Tao, Y., Farsetta, D.L., Nibert, M.L., Harrison, S.C.

(2002) Cell 111: 733-745

Released	2002-12-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Reovirus sp.
Macromolecule	MINOR CORE PROTEIN LAMBDA 3 (protein)
Unique Ligands	GTG, MN

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1N1H \| pdb_00001n1h	Download File View File

Initiation complex of polymerase lambda3 from reovirus

Tao, Y., Farsetta, D.L., Nibert, M.L., Harrison, S.C.

(2002) Cell 111: 733-745

Released	2002-12-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mammalian orthoreovirus 3 Dearing
Macromolecule	Minor core protein lambda 3 (protein) 5'-R(APUPUPAPGPC)-3' (nucleic acid)
Unique Ligands	CH1, G7M, GDP, GH3, MN

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1N35 \| pdb_00001n35	Download File View File

lambda3 elongation complex with four phosphodiester bond formed

Tao, Y., Farsetta, D.L., Nibert, M.L., Harrison, S.C.

(2002) Cell 111: 733-745

Released	2002-12-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mammalian orthoreovirus 3 Dearing
Macromolecule	Minor core protein lambda 3 (protein) 5'-R(APUPUPAPGPCPCPCPCPC)-3' (nucleic acid) 5'-R(PGPGPGPGP*G)-3' (nucleic acid)
Unique Ligands	CH1, MN

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1N38 \| pdb_00001n38	Download File View File

reovirus polymerase lambda3 elongation complex with one phosphodiester bond formed

Tao, Y., Farsetta, D.L., Nibert, M.L., Harrison, S.C.

(2002) Cell 111: 733-745

Released	2002-12-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mammalian orthoreovirus 3 Dearing
Macromolecule	Minor core protein lambda 3 (protein) 5'-R(APUPUPAPGPC)-3' (nucleic acid) 5'-R(PGPC)-3' (nucleic acid)
Unique Ligands	CH1, MN, U3H

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1N64 \| pdb_00001n64	Download File View File

Crystal structure analysis of the immunodominant antigenic site on Hepatitis C virus protein bound to mAb 19D9D6

Menez, R., Bossus, M., Muller, B., Sibai, G., Dalbon, P., Ducancel, F., Jolivet-Reynaud, C., Stura, E.

(2003) J Immunol 170: 1917-1924

Released	2003-02-25
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Hepatitis C virus genotype 1b (isolate Taiwan) Mus musculus
Macromolecule	Fab 19D9D6 heavy chain (protein) Fab 19D9D6 light chain (protein) Genome polyprotein Capsid protein C (protein)

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1NB4 \| pdb_00001nb4	Download File View File

HC-J4 RNA polymerase apo-form

Jaeger, J., O'Farrell, D.J., Trowbridge, R., Rowlands, D.J.

(2003) J Mol Biology 326: 1025-1035

Released	2003-03-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Hepacivirus hominis
Macromolecule	polyprotein (protein)

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1NB6 \| pdb_00001nb6	Download File View File

HC-J4 RNA polymerase complexed with UTP

O'Farrell, D.J., Trowbridge, R., Rowlands, D.J., Jaeger, J.

(2003) J Mol Biology 326: 1025-1035

Released	2003-03-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Hepacivirus hominis
Macromolecule	polyprotein (protein)
Unique Ligands	MN, UTP

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1NB7 \| pdb_00001nb7	Download File View File

HC-J4 RNA polymerase complexed with short RNA template strand

O'Farrell, D.J., Trowbridge, R., Rowlands, D.J., Jaeger, J.

(2003) J Mol Biology 326: 1025-1035

Released	2003-03-25
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Hepacivirus hominis
Macromolecule	polyprotein (protein) 5'-R(UPUPUPU)-3' (nucleic acid)
Unique Ligands	MN

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1NHU \| pdb_00001nhu	Download File View File

Hepatitis C virus RNA polymerase in complex with non-nucleoside analogue inhibitor

Wang, M., Ng, K.K.S., Cherney, M.M., Chan, L., Yannopoulos, C.G., Bedard, J., Morin, N., Nguyen-Ba, N., Alaoui-Ismaili, M.H., Bethell, R.C., James, M.N.G.

(2003) J Biological Chem 278: 9489-9495

Released	2003-03-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Hepatitis C virus subtype 1b
Macromolecule	HEPATITIS C VIRUS NS5B RNA-DEPENDENT RNA POLYMERASE (protein)
Unique Ligands	153

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1NHV \| pdb_00001nhv	Download File View File

Hepatitis C virus RNA polymerase in complex with non-nucleoside analogue inhibitor

Wang, M., Ng, K.K.S., Cherney, M.M., Chan, L., Yannopoulos, C.G., Bedard, J., Morin, N., Nguyen-Ba, N., Alaoui-Ismaili, M.H., Bethell, R.C., James, M.N.G.

(2003) J Biological Chem 278: 9489-9495

Released	2003-03-18
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Hepatitis C virus subtype 1b
Macromolecule	HEPATITIS C VIRUS NS5B RNA-DEPENDENT RNA POLYMERASE (protein)
Unique Ligands	154

1 to 25 of 1,214 Structures

Page 1 of 49

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1C2P | pdb_00001c2p

1CSJ | pdb_00001csj

1EZJ | pdb_00001ezj

1GX5 | pdb_00001gx5

1GX6 | pdb_00001gx6

1HAV | pdb_00001hav

1HHS | pdb_00001hhs

1HHT | pdb_00001hht

1HI0 | pdb_00001hi0

1HI1 | pdb_00001hi1

1HI8 | pdb_00001hi8

1KHV | pdb_00001khv

1KHW | pdb_00001khw

1L9K | pdb_00001l9k

1MUK | pdb_00001muk

1MWH | pdb_00001mwh

1N1H | pdb_00001n1h

1N35 | pdb_00001n35

1N38 | pdb_00001n38

1N64 | pdb_00001n64

1NB4 | pdb_00001nb4

1NB6 | pdb_00001nb6

1NB7 | pdb_00001nb7

1NHU | pdb_00001nhu

1NHV | pdb_00001nhv