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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 2.7.7.52

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Search Summary

This query matches 65 Structures.

Refinements

Structure Determination Methodology

experimental (65)

Scientific Name of Source Organism

	Homo sapiens (19)
	Trypanosoma brucei (18)
	Schizosaccharomyces pombe 972h- (11)
	Drosophila melanogaster (9)
	Schizosaccharomyces pombe (4)
	Arabidopsis thaliana (3)
	synthetic construct (2)
	Leishmania tarentolae (1)

Taxonomy

	Eukaryota (65)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (56)
	ELECTRON MICROSCOPY (8)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (65)
	RNA (19)

Refinement Resolution (Å)

	1.5 - 2.0 (18)
	2.0 - 2.5 (20)
	2.5 - 3.0 (13)
	3.0 - 3.5 (6)
	3.5 - 4.0 (6)
	4.0 - 4.5 (1)

Release Date

	2005 - 2009 (11)
	2010 - 2014 (16)
	2015 - 2019 (26)
	2020 - 2024 (11)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (65)
	Isomerases (2)

Symmetry Type

	Asymmetric (65)
	Cyclic (2)

SCOP Classification

	All alpha proteins (3)
	Alpha and beta proteins (a+b) (3)

AllSelected

1 to 25 of 65 Structures

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2B4V \| pdb_00002b4v	Download File View File

Structural Basis for UTP Specificity of RNA Editing TUTases From Trypanosoma Brucei

Deng, J., Ernst, N.L., Turley, S., Stuart, K.D., Hol, W.G.

(2005) EMBO J 24: 4007-4017

Released	2005-11-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Trypanosoma brucei
Macromolecule	RNA editing complex protein MP57 (protein)
Unique Ligands	K

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2B51 \| pdb_00002b51	Download File View File

Structural Basis for UTP Specificity of RNA Editing TUTases from Trypanosoma Brucei

Deng, J., Ernst, N.L., Turley, S., Stuart, K.D., Hol, W.G.

(2005) EMBO J 24: 4007-4017

Released	2005-11-22
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Trypanosoma brucei
Macromolecule	RNA editing complex protein MP57 (protein)
Unique Ligands	MN, UTP

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2B56 \| pdb_00002b56	Download File View File

Structural Basis for UTP Specificity of RNA Editing TUTases From Trypanosoma Brucei

Deng, J., Ernst, N.L., Turley, S., Stuart, K.D., Hol, W.G.

(2005) EMBO J 24: 4007-4017

Released	2005-11-22
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Trypanosoma brucei
Macromolecule	RNA editing complex protein MP57 (protein)
Unique Ligands	MG, U5P, UTP

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2E5G \| pdb_00002e5g	Download File View File

Solution structure of RNA binding domain in RNA binding motif protein 21

Tsuda, K., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-06-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	U6 snRNA-specific terminal uridylyltransferase 1 (protein)

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2IKF \| pdb_00002ikf	Download File View File

Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP

Luecke, H., Stagno, J.

(2007) J Mol Biology 366: 882-899

Released	2007-02-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trypanosoma brucei
Macromolecule	RNA uridylyl transferase (protein)
Unique Ligands	MG, UTP

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2NOM \| pdb_00002nom	Download File View File

Terminal uridylyl transferase 4 from Trypanosoma brucei with bound dUTP

Luecke, H., Stagno, J.

(2007) J Mol Biology 366: 882-899

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Trypanosoma brucei
Macromolecule	RNA uridylyl transferase (protein)
Unique Ligands	DUT, MG

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2Q0C \| pdb_00002q0c	Download File View File

Terminal uridylyl transferase 4 from Trypanosoma brucei with bound CTP

Stagno, J., Luecke, H.

(2007) Proc Natl Acad Sci U S A 104: 14634-14639

Released	2007-08-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Trypanosoma brucei
Macromolecule	RNA uridylyl transferase (protein)
Unique Ligands	CTP, MG

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2Q0D \| pdb_00002q0d	Download File View File

Terminal uridylyl transferase 4 from Trypanosoma brucei with bound ATP

Stagno, J., Luecke, H.

(2007) Proc Natl Acad Sci U S A 104: 14634-14639

Released	2007-08-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trypanosoma brucei
Macromolecule	RNA uridylyl transferase (protein)
Unique Ligands	ATP, MG

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2Q0E \| pdb_00002q0e	Download File View File

Terminal uridylyl transferase 4 from Trypanosoma brucei with bound GTP

Stagno, J., Luecke, H.

(2007) Proc Natl Acad Sci U S A 104: 14634-14639

Released	2007-08-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Trypanosoma brucei
Macromolecule	RNA uridylyl transferase (protein)
Unique Ligands	GTP, MG

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2Q0F \| pdb_00002q0f	Download File View File

Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UMP

Stagno, J., Luecke, H.

(2007) Proc Natl Acad Sci U S A 104: 14634-14639

Released	2007-08-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Trypanosoma brucei
Macromolecule	RNA uridylyl transferase (protein)
Unique Ligands	MG, U5P, UTP

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2Q0G \| pdb_00002q0g	Download File View File

Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UPU

Stagno, J., Luecke, H.

(2007) Proc Natl Acad Sci U S A 104: 14634-14639

Released	2007-08-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Trypanosoma brucei
Macromolecule	RNA uridylyl transferase (protein)
Unique Ligands	CL, MG, UPU

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3HIY \| pdb_00003hiy	Download File View File

Minor Editosome-Associated TUTase 1 with bound UTP and Mg

Stagno, J., Luecke, H.

(2010) J Mol Biology 399: 464-475

Released	2010-05-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Trypanosoma brucei
Macromolecule	Minor Editosome-Associated TUTase (protein)
Unique Ligands	MG, UTP

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3HJ1 \| pdb_00003hj1	Download File View File

Minor Editosome-Associated TUTase 1 with bound UTP

Stagno, J., Luecke, H.

(2010) J Mol Biology 399: 464-475

Released	2010-05-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Trypanosoma brucei
Macromolecule	Minor Editosome-Associated TUTase (protein)
Unique Ligands	UTP

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3HJ4 \| pdb_00003hj4	Download File View File

Minor Editosome-Associated TUTase 1

Stagno, J., Luecke, H.

(2010) J Mol Biology 399: 464-475

Released	2010-05-12
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Trypanosoma brucei
Macromolecule	Minor Editosome-Associated TUTase (protein)

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4E7X \| pdb_00004e7x	Download File View File

Structural Basis for the Activity of a Cytoplasmic RNA Terminal U-transferase

Yates, L.A., Fleurdepine, S., Rissland, O.S., DeColibus, L., Harlos, K., Norbury, C.J., Gilbert, R.J.C.

(2012) Nat Struct Mol Biol 19: 782-787

Released	2012-07-04
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Poly(A) RNA polymerase protein cid1 (protein)
Unique Ligands	ACT

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4E80 \| pdb_00004e80	Download File View File

Structural Basis for the Activity of a Cytoplasmic RNA Terminal U-transferase

Yates, L.A., Fleurdepine, S., Rissland, O.S., DeColibus, L., Harlos, K., Norbury, C.J., Gilbert, R.J.C.

(2012) Nat Struct Mol Biol 19: 782-787

Released	2012-07-04
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Poly(A) RNA polymerase protein cid1 (protein)
Unique Ligands	UTP

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4E8F \| pdb_00004e8f	Download File View File

Structural Basis for the Activity of a Cytoplasmic RNA Terminal U-transferase

Yates, L.A., Fleurdepine, S., Rissland, O.S., DeColibus, L., Harlos, K., Norbury, C.J., Gilbert, R.J.C.

(2012) Nat Struct Mol Biol 19: 782-787

Released	2012-07-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Poly(A) RNA polymerase protein cid1 (protein)
Unique Ligands	ACT, GOL

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4EP7 \| pdb_00004ep7	Download File View File

Functional implications from the Cid1 poly(U) polymerase crystal structure

Munoz-Tello, P., Gabus, C., Thore, S.

(2012) Structure 20: 977-986

Released	2012-06-06
Method	X-RAY DIFFRACTION 2.2805 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Poly(A) RNA polymerase protein cid1 (protein)
Unique Ligands	MG, UTP

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4FH3 \| pdb_00004fh3	Download File View File

Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity

Lunde, B.M., Magler, I., Meinhart, A.

(2012) Nucleic Acids Res 40: 9815-9824

Released	2012-08-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Poly(A) RNA polymerase protein cid1 (protein)

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4FH5 \| pdb_00004fh5	Download File View File

Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity - MgUTP bound

Lunde, B.M., Magler, I., Meinhart, A.

(2012) Nucleic Acids Res 40: 9815-9824

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Poly(A) RNA polymerase protein cid1 (protein)
Unique Ligands	MG, UTP

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4FHP \| pdb_00004fhp	Download File View File

Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity - CaUTP bound

Lunde, B.M., Magler, I., Meinhart, A.

(2012) Nucleic Acids Res 40: 9815-9824

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Poly(A) RNA polymerase protein cid1 (protein)
Unique Ligands	CA, GOL, UTP

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4FHV \| pdb_00004fhv	Download File View File

Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity - MgCTP bound

Lunde, B.M., Magler, I., Meinhart, A.

(2012) Nucleic Acids Res 40: 9815-9824

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Poly(A) RNA polymerase protein cid1 (protein)
Unique Ligands	CTP, MG

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4FHW \| pdb_00004fhw	Download File View File

Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity - MgGTP bound

Lunde, B.M., Magler, I., Meinhart, A.

(2012) Nucleic Acids Res 40: 9815-9824

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Poly(A) RNA polymerase protein cid1 (protein)
Unique Ligands	GTP, MG

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4FHX \| pdb_00004fhx	Download File View File

Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity - H336N mutant bound to MgATP

Lunde, B.M., Magler, I., Meinhart, A.

(2012) Nucleic Acids Res 40: 9815-9824

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Poly(A) RNA polymerase protein cid1 (protein)
Unique Ligands	ATP, MG

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4FHY \| pdb_00004fhy	Download File View File

Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity - Mg 3'-dATP bound

Lunde, B.M., Magler, I., Meinhart, A.

(2012) Nucleic Acids Res 40: 9815-9824

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Poly(A) RNA polymerase protein cid1 (protein)
Unique Ligands	3AT, MG

1 to 25 of 65 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2B4V | pdb_00002b4v

2B51 | pdb_00002b51

2B56 | pdb_00002b56

2E5G | pdb_00002e5g

2IKF | pdb_00002ikf

2NOM | pdb_00002nom

2Q0C | pdb_00002q0c

2Q0D | pdb_00002q0d

2Q0E | pdb_00002q0e

2Q0F | pdb_00002q0f

2Q0G | pdb_00002q0g

3HIY | pdb_00003hiy

3HJ1 | pdb_00003hj1

3HJ4 | pdb_00003hj4

4E7X | pdb_00004e7x

4E80 | pdb_00004e80

4E8F | pdb_00004e8f

4EP7 | pdb_00004ep7

4FH3 | pdb_00004fh3

4FH5 | pdb_00004fh5

4FHP | pdb_00004fhp

4FHV | pdb_00004fhv

4FHW | pdb_00004fhw

4FHX | pdb_00004fhx

4FHY | pdb_00004fhy