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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 3.1.4.37

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Search Summary

This query matches 44 Structures.

Refinements

Structure Determination Methodology

experimental (44)

Scientific Name of Source Organism

	Mus musculus (38)
	Vicugna pacos (5)
	Arabidopsis thaliana (3)
	Carassius auratus (1)
	Homo sapiens (1)
	Rattus norvegicus (1)

Taxonomy

Eukaryota (44)

Experimental Method

	X-RAY DIFFRACTION (42)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (44)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (16)
	2.0 - 2.5 (19)
	2.5 - 3.0 (6)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (3)
	2010 - 2014 (15)
	2015 - 2019 (16)
	2020 - 2024 (7)

Enzyme Classification Name

Hydrolases (44)

Symmetry Type

	Asymmetric (44)
	Cyclic (2)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a+b) (37)
	Artifacts (4)

AllSelected

1 to 25 of 44 Structures

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1FSI \| pdb_00001fsi	Download File View File

CRYSTAL STRUCTURE OF CYCLIC NUCLEOTIDE PHOSPHODIESTERASE OF APPR>P FROM ARABIDOPSIS THALIANA

Hofmann, A., Zdanov, A., Genschik, P., Filipowicz, W., Ruvinov, S., Wlodawer, A.

(2000) EMBO J 19: 6207-6217

Released	2000-11-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Arabidopsis thaliana
Macromolecule	CYCLIC PHOSPHODIESTERASE (protein)
Unique Ligands	SO4

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1JH6 \| pdb_00001jh6	Download File View File

Semi-reduced Cyclic Nucleotide Phosphodiesterase from Arabidopsis thaliana

Hofmann, A., Grella, M., Botos, I., Filipowicz, W., Wlodawer, A.

(2002) J Biological Chem 277: 1419-1425

Released	2002-02-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Arabidopsis thaliana
Macromolecule	cyclic phosphodiesterase (protein)
Unique Ligands	SO4

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1JH7 \| pdb_00001jh7	Download File View File

Semi-reduced Inhibitor-bound Cyclic Nucleotide Phosphodiesterase from Arabidopsis thaliana

Hofmann, A., Grella, M., Botos, I., Filipowicz, W., Wlodawer, A.

(2002) J Biological Chem 277: 1419-1425

Released	2002-02-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Arabidopsis thaliana
Macromolecule	cyclic phosphodiesterase (protein)
Unique Ligands	SO4, UVC

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1WOJ \| pdb_00001woj	Download File View File

Crystal structure of human phosphodiesterase

Sakamoto, Y., Tanaka, N., Ichimiya, T., Kurihara, T., Nakamura, K.T.

(2005) J Mol Biology 346: 789-800

Released	2005-03-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	2',3'-cyclic-nucleotide 3'-phosphodiesterase (protein)
Unique Ligands	PO4

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2I3E \| pdb_00002i3e	Download File View File

Solution structure of catalytic domain of goldfish RICH protein

Denisov, A.Y., Kozlov, G., Gehring, K.

(2007) FEBS J 274: 1600-1609

Released	2007-03-06
Method	SOLUTION NMR
Organisms	Carassius auratus
Macromolecule	G-RICH (protein)

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2ILX \| pdb_00002ilx	Download File View File

Solution structure of catalytic domain of rat 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) protein

Denisov, A.Y., Kozlov, G., Gehring, K.

(2007) FEBS J 274: 1600-1609

Released	2007-03-06
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	2',3'-cyclic-nucleotide 3'-phosphodiesterase (protein)

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2XMI \| pdb_00002xmi	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, complexed with citrate

Myllykoski, M., Kursula, P.

(2012) PLoS One 7: 32336

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Mus musculus
Macromolecule	2', 3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE (protein)
Unique Ligands	FLC, GOL

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2Y1P \| pdb_00002y1p	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, complexed with citrate

Myllykoski, M., Kursula, P.

(2012) PLoS One 7: 32336

Released	2011-12-21
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Mus musculus
Macromolecule	2', 3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE (protein)
Unique Ligands	CIT, GOL

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2Y3X \| pdb_00002y3x	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, complexed with sulfate

Myllykoski, M., Kursula, P.

(2012) PLoS One 7: 32336

Released	2012-01-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	2', 3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE (protein)
Unique Ligands	GOL, SO4

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2YDB \| pdb_00002ydb	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, soaked with 2',3'-cyclic NADP

Myllykoski, M., Kursula, P.

(2012) PLoS One 7: 32336

Released	2012-03-21
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mus musculus
Macromolecule	2', 3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE (protein)
Unique Ligands	NAP

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2YDC \| pdb_00002ydc	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, soaked with GTP

Myllykoski, M., Kursula, P.

To be published

Released	2012-03-28
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mus musculus
Macromolecule	2', 3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE (protein)
Unique Ligands	GDP

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2YDD \| pdb_00002ydd	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, soaked with 2',3'-cyclic AMP

Myllykoski, M., Kursula, P.

(2012) PLoS One 7: 32336

Released	2012-03-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	2', 3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE (protein)
Unique Ligands	2AM

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2YOZ \| pdb_00002yoz	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, crystallized with 2'-AMPS

Myllykoski, M., Raasakka, A., Lehtimaki, M., Han, H., Kursula, P.

(2013) J Mol Biology 425: 4307

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	2,3-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE (protein)
Unique Ligands	1PE, ACT, CL, GOL, OVE

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2YP0 \| pdb_00002yp0	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, crystallized with 2'-AMPS

Myllykoski, M., Raasakka, A., Lehtimaki, M., Han, H., Kursula, P.

(2013) J Mol Biology 425: 4307

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	2', 3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE (protein)
Unique Ligands	1PE, ACY, GOL, OVE

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2YPC \| pdb_00002ypc	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation H309S, crystallized with 2',3-(SP)-Cyclic-AMPS

Myllykoski, M., Raasakka, A., Lehtimaki, M., Han, H., Kursula, P.

(2013) J Mol Biology 425: 4307

Released	2013-07-10
Method	X-RAY DIFFRACTION 1.894 Å
Organisms	Mus musculus
Macromolecule	2', 3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE (protein)
Unique Ligands	QQX

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2YPE \| pdb_00002ype	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation H309S, crystallized with 2',3'- cyclic AMP

Myllykoski, M., Raasakka, A., Lehtimaki, M., Han, H., Kursula, P.

(2013) J Mol Biology 425: 4307-4322

Released	2013-07-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	2', 3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE (protein)
Unique Ligands	ACK, ACY, CL

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2YPH \| pdb_00002yph	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation H230S, crystallized with 2',3-(RP)- cyclic-AMPS

Myllykoski, M., Raasakka, A., Lehtimaki, M., Han, H., Kursula, P.

(2013) J Mol Biology 425: 4307

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	2', 3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE (protein)
Unique Ligands	ACT, CL, QQY

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2YQ9 \| pdb_00002yq9	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation V321A, crystallized with 2'-AMP

Myllykoski, M., Raasakka, A., Lehtimaki, M., Han, H., Kursula, P.

(2013) J Mol Biology 425: 4307

Released	2013-07-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	2', 3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE (protein)
Unique Ligands	2AM

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3ZBR \| pdb_00003zbr	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation H230S, crystallized with NADP

Myllykoski, M., Raasakka, A., Lehtimaki, M., Han, H., Kursula, P.

(2013) J Mol Biology 425: 4307

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.304 Å
Organisms	Mus musculus
Macromolecule	2', 3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE (protein)
Unique Ligands	NAP

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3ZBS \| pdb_00003zbs	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation V321A, crystallized with 2'-AMPS

Myllykoski, M., Raasakka, A., Lehtimaki, M., Han, H., Kursula, P.

(2013) J Mol Biology 425: 4307

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Mus musculus
Macromolecule	2', 3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE (protein)
Unique Ligands	CL, OVE

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3ZBZ \| pdb_00003zbz	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation V321A, crystallized with 2'-AMPS

Myllykoski, M., Raasakka, A., Lehtimaki, M., Han, H., Kursula, P.

(2013) J Mol Biology 425: 4307

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	2', 3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE (protein)
Unique Ligands	ACY, OVE

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4WBI \| pdb_00004wbi	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutations H230Q and H309Q

Myllykoski, M., Raasakka, A., Kursula, P.

(2015) Sci Rep 5: 16520-16520

Released	2015-09-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	2',3'-cyclic-nucleotide 3'-phosphodiesterase (protein)

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4WBL \| pdb_00004wbl	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation F235A

Myllykoski, M., Raasakka, A., Kursula, P.

(2015) Sci Rep 5: 16520-16520

Released	2015-09-23
Method	X-RAY DIFFRACTION 2.501 Å
Organisms	Mus musculus
Macromolecule	2',3'-cyclic-nucleotide 3'-phosphodiesterase (protein)
Unique Ligands	CL, GOL

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4WC9 \| pdb_00004wc9	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation F235L

Myllykoski, M., Raasakka, A., Kursula, P.

(2015) Sci Rep 5: 16520-16520

Released	2015-09-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	2',3'-cyclic-nucleotide 3'-phosphodiesterase (protein)

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4WCA \| pdb_00004wca	Download File View File

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation H230Q, complexed with citrate

Myllykoski, M., Raasakka, A., Kursula, P.

(2015) Sci Rep 5: 16520-16520

Released	2015-09-23
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Mus musculus
Macromolecule	2',3'-cyclic-nucleotide 3'-phosphodiesterase (protein)
Unique Ligands	1PE, CIT, CL

1 to 25 of 44 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1FSI | pdb_00001fsi

1JH6 | pdb_00001jh6

1JH7 | pdb_00001jh7

1WOJ | pdb_00001woj

2I3E | pdb_00002i3e

2ILX | pdb_00002ilx

2XMI | pdb_00002xmi

2Y1P | pdb_00002y1p

2Y3X | pdb_00002y3x

2YDB | pdb_00002ydb

2YDC | pdb_00002ydc

2YDD | pdb_00002ydd

2YOZ | pdb_00002yoz

2YP0 | pdb_00002yp0

2YPC | pdb_00002ypc

2YPE | pdb_00002ype

2YPH | pdb_00002yph

2YQ9 | pdb_00002yq9

3ZBR | pdb_00003zbr

3ZBS | pdb_00003zbs

3ZBZ | pdb_00003zbz

4WBI | pdb_00004wbi

4WBL | pdb_00004wbl

4WC9 | pdb_00004wc9

4WCA | pdb_00004wca