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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 3.2.1.169

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Search Summary

This query matches 84 Structures.

Refinements

Structure Determination Methodology

experimental (84)

Scientific Name of Source Organism

	Homo sapiens (27)
	Bacteroides thetaiotaomicron VPI-5482 (24)
	Clostridium perfringens (19)
	Bacteroides thetaiotaomicron (9)
	Clostridium perfringens ATCC 13124 (5)
	Oceanicola granulosus HTCC2516 (3)
	Drosophila melanogaster (1)
	Escherichia coli K-12 (1)
	Trichoplax adhaerens (1)

Taxonomy

	Bacteria (60)
	Eukaryota (29)

Experimental Method

	X-RAY DIFFRACTION (82)
	ELECTRON MICROSCOPY (1)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (84)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (17)
	2.0 - 2.5 (39)
	2.5 - 3.0 (19)
	3.0 - 3.5 (6)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (25)
	2010 - 2014 (15)
	2015 - 2019 (34)
	2020 - 2024 (8)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (84)
	Transferases (1)

Symmetry Type

	Asymmetric (54)
	Cyclic (30)

SCOP Classification

	All alpha proteins (23)
	Alpha and beta proteins (a/b) (23)
	Alpha and beta proteins (a+b) (23)
	All beta proteins (3)
	Artifacts (1)

AllSelected

1 to 25 of 84 Structures

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2CBI \| pdb_00002cbi	Download File View File

Structure of the Clostridium perfringens NagJ family 84 glycoside hydrolase, a homologue of human O-GlcNAcase

Rao, F.V., Dorfmueller, H.C., Villa, F., Allwood, M., Eggleston, I.M., van Aalten, D.M.F.

(2006) EMBO J 25: 1569-1578

Released	2006-02-13
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Clostridium perfringens
Macromolecule	HYALURONIDASE (protein)
Unique Ligands	CL, GBL, GOL, SO4, ZN

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2CBJ \| pdb_00002cbj	Download File View File

Structure of the Clostridium perfringens NagJ family 84 glycoside hydrolase, a homologue of human O-GlcNAcase in complex with PUGNAc

Rao, F.V., Dorfmueller, H.C., Villa, F., Allwood, M., Eggleston, I.M., van Aalten, D.M.F.

(2006) EMBO J 25: 1569-1578

Released	2006-02-13
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Clostridium perfringens
Macromolecule	HYALURONIDASE (protein)
Unique Ligands	CL, OAN

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2CHN \| pdb_00002chn	Download File View File

Bacteroides thetaiotaomicron hexosaminidase with O-GlcNAcase activity- NAG-thiazoline complex

Dennis, R.J., Taylor, E.J., Macauley, M.S., Stubbs, K.A., Turkenburg, J.P., Hart, S.J., Black, G.N., Vocadlo, D.J., Davies, G.J.

(2006) Nat Struct Mol Biol 13: 365

Released	2006-05-08
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	GLUCOSAMINIDASE (protein)
Unique Ligands	CA, GOL, NGT

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2CHO \| pdb_00002cho	Download File View File

Bacteroides thetaiotaomicron hexosaminidase with O-GlcNAcase activity

Dennis, R.J., Taylor, E.J., Macauley, M.S., Stubbs, K.A., Turkenburg, J.P., Hart, S.J., Black, G.N., Vocadlo, D.J., Davies, G.J.

(2006) Nat Struct Mol Biol 13: 365

Released	2006-06-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	GLUCOSAMINIDASE (protein)
Unique Ligands	ACT, CA, GOL

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2J1A \| pdb_00002j1a	Download File View File

Structure of CBM32 from Clostridium perfringens beta-N- acetylhexosaminidase GH84C in complex with galactose

Ficko-Blean, E., Boraston, A.B.

(2006) J Biological Chem 281: 37748

Released	2006-08-22
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Clostridium perfringens ATCC 13124
Macromolecule	HYALURONIDASE (protein)
Unique Ligands	CA, GAL

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2J1E \| pdb_00002j1e	Download File View File

High Resolution Crystal Structure of CBM32 from a N-acetyl-beta- hexosaminidase in complex with lacNAc

Ficko-Blean, E., Boraston, A.B.

(2006) J Biological Chem 281: 37748

Released	2006-09-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Clostridium perfringens ATCC 13124
Macromolecule	HYALURONIDASE (protein)
Unique Ligands	CA
Unique branched monosaccharides	GAL, NDG

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2J47 \| pdb_00002j47	Download File View File

Bacteroides thetaiotaomicron GH84 O-GlcNAcase in complex with a imidazole-pugnac hybrid inhibitor

Dennis, R.J., Davies, G.J.

(2006) Chem Commun (Camb) 42: 4372

Released	2006-10-03
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	GLUCOSAMINIDASE (protein)
Unique Ligands	GDV, GOL

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2J4G \| pdb_00002j4g	Download File View File

Bacteroides thetaiotaomicron GH84 O-GlcNAcase in complex with n-butyl- thiazoline inhibitor

Dennis, R.J., Davies, G.J.

(2007) J Am Chem Soc 129: 635

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	HYALURONOGLUCOSAMINIDASE (protein)
Unique Ligands	ACT, GOL, NB1

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2J62 \| pdb_00002j62	Download File View File

Structure of a bacterial O-glcnacase in complex with glcnacstatin

Dorfmueller, H.C., Borodkin, V.S., Schimpl, M., Shepherd, S.M., Shpiro, N.A., van Aalten, D.M.F.

(2006) J Am Chem Soc 128: 16484-16485

Released	2007-02-13
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Clostridium perfringens
Macromolecule	O-GlcNAcase NagJ (protein)
Unique Ligands	CL, GSZ

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2J7M \| pdb_00002j7m	Download File View File

Characterization of a Family 32 CBM

Ficko-Blean, E., Boraston, A.B.

(2006) J Biological Chem 281: 37748

Released	2006-10-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Clostridium perfringens
Macromolecule	HYALURONIDASE (protein)
Unique Ligands	CA
Unique branched monosaccharides	FUC, GAL, NDG

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2JH2 \| pdb_00002jh2	Download File View File

X-ray crystal structure of a cohesin-like module from Clostridium perfringens

Chitayat, S., Gregg, K., Adams, J.J., Ficko-Blean, E., Bayer, E.A., Boraston, A.B., Smith, S.P.

(2008) J Mol Biology 375: 20

Released	2007-11-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)

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2JIW \| pdb_00002jiw	Download File View File

Bacteroides thetaiotaomicron GH84 O-GlcNAcase in complex with 2- Acetylamino-2-deoxy-1-epivalienamine

Dennis, R.J., Davies, G.J.

(2007) Org Biomol Chem 5: 3013

Released	2007-08-07
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	O-GLCNACASE BT_4395 (protein)
Unique Ligands	BEU

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2O4E \| pdb_00002o4e	Download File View File

The solution structure of a protein-protein interaction module from a family 84 glycoside hydrolase of Clostridium perfringens

Chitayat, S., Adams, J.J., Gregg, K., Boraston, A.B., Smith, S.P.

(2008) J Mol Biology 375: 20-28

Released	2007-11-06
Method	SOLUTION NMR
Organisms	Clostridium perfringens
Macromolecule	O-GlcNAcase nagJ (protein)

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2OZN \| pdb_00002ozn	Download File View File

The Cohesin-Dockerin Complex of NagJ and NagH from Clostridium perfringens

Adams, J.J., Boraston, A., Smith, S.P.

(2008) Proc Natl Acad Sci U S A 105: 12194-12199

Released	2008-05-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Clostridium perfringens Clostridium perfringens ATCC 13124
Macromolecule	Hyalurononglucosaminidase (protein) O-GlcNAcase nagJ (protein)
Unique Ligands	CA, CL

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2V5C \| pdb_00002v5c	Download File View File

Family 84 glycoside hydrolase from Clostridium perfringens, 2.1 Angstrom structure

Ficko-Blean, E., Gregg, K.J., Adams, J.J., Hehemann, J.H., Smith, S.J., Czjzek, M., Boraston, A.B.

(2009) J Biological Chem 284: 9876

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)
Unique Ligands	CA, CAC, NA

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2V5D \| pdb_00002v5d	Download File View File

Structure of a Family 84 Glycoside Hydrolase and a Family 32 Carbohydrate-Binding Module in Tandem from Clostridium perfringens.

Ficko-Blean, E., Gregg, K.J., Adams, J.J., Hehemann, J.H., Smith, S.J., Czjzek, M., Boraston, A.B.

(2009) J Biological Chem 284: 9876

Released	2009-01-27
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)
Unique Ligands	CA

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2VUR \| pdb_00002vur	Download File View File

Chemical dissection of the link between Streptozotocin, O-GlcNAc and pancreatic cell death

Pathak, S., Dorfmueller, H.C., Borodkin, V.S., van Aalten, D.M.F.

(2008) Chem Biol 15: 799

Released	2009-02-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)
Unique Ligands	SO4, YX1

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2VVN \| pdb_00002vvn	Download File View File

BtGH84 in complex with NH-Butylthiazoline

He, Y., Davies, G.J.

(2008) Nat Chem Biol 4: 483

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	O-GLCNACASE BT_4395 (protein)
Unique Ligands	GOL, NH4, NHT

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2VVS \| pdb_00002vvs	Download File View File

BtGH84 structure in complex with PUGNAc

Macauley, M.S., Bubb, A., Martinez-Fleites, C., Davies, G.J., Vocadlo, D.J.

(2008) J Biological Chem 283: 34687

Released	2008-09-30
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	O-GLCNACASE BT_4395 (protein)
Unique Ligands	OAN

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2W1N \| pdb_00002w1n	Download File View File

cohesin and fibronectin type-III double module construct from the Clostridium perfringens glycoside hydrolase GH84C

Ficko-Blean, E., Gregg, K.J., Adams, J.J., Hehemann, J.H., Czjzek, M., Smith, S.J., Boraston, A.B.

(2009) J Biological Chem 284: 9876

Released	2009-02-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)
Unique Ligands	ACT

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2W4X \| pdb_00002w4x	Download File View File

BtGH84 in complex with STZ

He, Y., Bubb, A., Martinez-Fleites, C., Davies, G.J.

(2009) Carbohydr Res 344: 627

Released	2009-02-24
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	O-GLCNACASE BT_4395 (protein)
Unique Ligands	CA, GOL, STZ

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2W66 \| pdb_00002w66	Download File View File

BtGH84 in complex with HQ602

He, Y., Davies, G.J.

(2009) J Am Chem Soc 131: 5390

Released	2009-04-14
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	O-GLCNACASE BT_4395 (protein)
Unique Ligands	CA, GOL, HQ6

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2W67 \| pdb_00002w67	Download File View File

BtGH84 in complex with FMA34

He, Y., Davies, G.J.

(2009) J Am Chem Soc 131: 5390

Released	2009-04-14
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	O-GLCNACASE BT_4395 (protein)
Unique Ligands	CA, F34, GOL

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2WB5 \| pdb_00002wb5	Download File View File

GlcNAcstatins are nanomolar inhibitors of human O-GlcNAcase inducing cellular hyper-O-GlcNAcylation

Dorfmueller, H.C., Borodkin, V.S., Schimpl, M., van Aalten, D.M.F.

(2009) Biochem J 420: 221

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)
Unique Ligands	CL, NA, VGB

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2WCA \| pdb_00002wca	Download File View File

BtGH84 in complex with n-butyl pugnac

He, Y., Davies, G.J.

(2009) Protein Sci 18: 1541

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	O-GLCNACASE BT_4395 (protein)
Unique Ligands	CA, NP6

1 to 25 of 84 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2CBI | pdb_00002cbi

2CBJ | pdb_00002cbj

2CHN | pdb_00002chn

2CHO | pdb_00002cho

2J1A | pdb_00002j1a

2J1E | pdb_00002j1e

2J47 | pdb_00002j47

2J4G | pdb_00002j4g

2J62 | pdb_00002j62

2J7M | pdb_00002j7m

2JH2 | pdb_00002jh2

2JIW | pdb_00002jiw

2O4E | pdb_00002o4e

2OZN | pdb_00002ozn

2V5C | pdb_00002v5c

2V5D | pdb_00002v5d

2VUR | pdb_00002vur

2VVN | pdb_00002vvn

2VVS | pdb_00002vvs

2W1N | pdb_00002w1n

2W4X | pdb_00002w4x

2W66 | pdb_00002w66

2W67 | pdb_00002w67

2WB5 | pdb_00002wb5

2WCA | pdb_00002wca