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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 3.6.4

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Search Summary

This query matches 3,767 Structures.

Refinements

Structure Determination Methodology

experimental (3,767)

Scientific Name of Source Organism

	Homo sapiens (1,739)
	synthetic construct (356)
	Oryctolagus cuniculus (279)
	Saccharomyces cerevisiae (230)
	Zika virus (203)
	Saccharomyces cerevisiae S288C (197)
	Mus musculus (177)
	Severe acute respiratory syndrome coronavirus 2 (117)
	Gallus gallus (104)
	Sus scrofa (90)

More...

Taxonomy

	Eukaryota (2,789)
	Riboviria (536)
	other sequences (356)
	Bacteria (353)
	Duplodnaviria (90)
	Monodnaviria (69)
	Archaea (65)
	Varidnaviria (61)
	Eukaryota (eukaryotes) (14)
	unclassified sequences (12)

Experimental Method

	X-RAY DIFFRACTION (2,245)
	ELECTRON MICROSCOPY (1,415)
	SOLUTION NMR (104)
	ELECTRON CRYSTALLOGRAPHY (1)
	FIBER DIFFRACTION (1)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (3,767)
	DNA (524)
	RNA (465)
	NA-hybrid (4)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (163)
	1.5 - 2.0 (756)
	2.0 - 2.5 (646)
	2.5 - 3.0 (582)
	3.0 - 3.5 (640)
	3.5 - 4.0 (403)
	4.0 - 4.5 (166)
	> 4.5 (301)

Release Date

	1990 - 1994 (14)
	1995 - 1999 (37)
	2000 - 2004 (122)
	2005 - 2009 (290)
	2010 - 2014 (528)
	2015 - 2019 (836)
	2020 - 2024 (1,696)
	2025 - 2029 (244)

Enzyme Classification Name

	Hydrolases (3,767)
	Transferases (660)
	Isomerases (287)
	Lyases (60)
	Translocases (6)
	Ligases (25)
	Oxidoreductases (2)

Membrane Protein Annotation

	PDBTM (12)
	OPM (9)
	MemProtMD (7)
	mpstruc (4)

Symmetry Type

	Asymmetric (3,010)
	Cyclic (602)
	Helical (155)
	Dihedral (78)
	Icosahedral (12)

SCOP Classification

	Alpha and beta proteins (a/b) (485)
	Alpha and beta proteins (a+b) (459)
	All beta proteins (150)
	Low resolution protein structures (13)
	Artifacts (177)
	All alpha proteins (109)
	Multi-domain proteins (alpha and beta) (25)
	Small proteins (23)
	Peptides (3)
	Coiled coil proteins (3)

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AllSelected

1 to 25 of 3,767 Structures

Page 1 of 151

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1A62 \| pdb_00001a62	Download File View File

CRYSTAL STRUCTURE OF THE RNA-BINDING DOMAIN OF THE TRANSCRIPTIONAL TERMINATOR PROTEIN RHO

Allison, T.J., Wood, T.C., Briercheck, D.M., Rastinejad, F., Richardson, J.P., Rule, G.S.

(1998) Nat Struct Biol 5: 352-356

Released	1998-06-17
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	RHO (protein)

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1A63 \| pdb_00001a63	Download File View File

THE NMR STRUCTURE OF THE RNA BINDING DOMAIN OF E.COLI RHO FACTOR SUGGESTS POSSIBLE RNA-PROTEIN INTERACTIONS, 10 STRUCTURES

Briercheck, D.M., Wood, T.C., Allison, T.J., Richardson, J.P., Rule, G.S.

(1998) Nat Struct Biol 5: 393-399

Released	1998-05-27
Method	SOLUTION NMR
Organisms	Escherichia coli BL21(DE3)
Macromolecule	RHO (protein)

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1A8V \| pdb_00001a8v	Download File View File

STRUCTURE OF THE RNA-BINDING DOMAIN OF THE RHO TRANSCRIPTION TERMINATOR

Fass, D., Bogden, C., Berger, J.M.

(1999) Mol Cell 3: 487-493

Released	1999-05-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	TRANSCRIPTION TERMINATION FACTOR RHO (protein)
Unique Ligands	CU

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1ATN \| pdb_00001atn	Download File View File

Atomic structure of the actin:DNASE I complex

Kabsch, W., Mannherz, H.G., Suck, D., Pai, E., Holmes, K.C.

(1990) Nature 347: 37-44

Released	1992-07-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bos taurus Oryctolagus cuniculus
Macromolecule	ACTIN (protein) DEOXYRIBONUCLEASE I (protein)
Unique Ligands	ATP, CA
Unique branched monosaccharides	BMA, NAG

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1ATR \| pdb_00001atr	Download File View File

THREONINE 204 OF THE CHAPERONE PROTEIN HSC70 INFLUENCES THE STRUCTURE OF THE ACTIVE SITE BUT IS NOT ESSENTIAL FOR ATP HYDROLYSIS

O'Brien, M.C., Mckay, D.B.

(1993) J Biological Chem 268: 24323-24329

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Bos taurus
Macromolecule	HEAT-SHOCK COGNATE 70 KD PROTEIN (protein)
Unique Ligands	ADP, MG, PO4

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1ATS \| pdb_00001ats	Download File View File

THREONINE 204 OF THE CHAPERONE PROTEIN HSC70 INFLUENCES THE STRUCTURE OF THE ACTIVE SITE BUT IS NOT ESSENTIAL FOR ATP HYDROLYSIS

O'Brien, M.C., Mckay, D.B.

(1993) J Biological Chem 268: 24323-24329

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Bos taurus
Macromolecule	HEAT-SHOCK COGNATE 70 KD PROTEIN (protein)
Unique Ligands	ADP, MG

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1BA0 \| pdb_00001ba0	Download File View File

HEAT-SHOCK COGNATE 70KD PROTEIN 44KD ATPASE N-TERMINAL 1NGE 3

Wilbanks, S.M., Mckay, D.B.

(1998) Biochemistry 37: 7456-7462

Released	1998-07-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	HEAT-SHOCK COGNATE 70KD PROTEIN (protein)
Unique Ligands	ADP, CL, MG, NA, PO4

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1BA1 \| pdb_00001ba1	Download File View File

HEAT-SHOCK COGNATE 70KD PROTEIN 44KD ATPASE N-TERMINAL MUTANT WITH CYS 17 REPLACED BY LYS

Wilbanks, S.M., Mckay, D.B.

(1998) Biochemistry 37: 7456-7462

Released	1998-07-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bos taurus
Macromolecule	HEAT-SHOCK COGNATE 70KD PROTEIN (protein)
Unique Ligands	ADP, CL, MG, NA

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1BUP \| pdb_00001bup	Download File View File

T13S MUTANT OF BOVINE 70 KILODALTON HEAT SHOCK PROTEIN

Sousa, M.C., Mckay, D.B.

(1998) Biochemistry 37: 15392-15399

Released	1998-09-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (70 KILODALTON HEAT SHOCK PROTEIN) (protein)
Unique Ligands	ADP, CL, K, MG, PO4

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1BYQ \| pdb_00001byq	Download File View File

HSP90 N-TERMINAL DOMAIN BOUND TO ADP-MG

Russo, A.A., Pavletich, N.P.

(1998) J Cell Biol 143: 901-910

Released	1998-10-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (HEAT SHOCK PROTEIN 90) (protein)
Unique Ligands	ADP, MG

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1C0F \| pdb_00001c0f	Download File View File

CRYSTAL STRUCTURE OF DICTYOSTELIUM CAATP-ACTIN IN COMPLEX WITH GELSOLIN SEGMENT 1

Matsuura, Y., Stewart, M., Kawamoto, M., Kamiya, N., Saeki, K., Yasunaga, T., Wakabayashi, T.

(2000) J Mol Biology 296: 579-595

Released	2000-03-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Dictyostelium discoideum Homo sapiens
Macromolecule	ACTIN (protein) GELSOLIN SEGMENT 1 (protein)
Unique Ligands	ATP, CA

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1C0G \| pdb_00001c0g	Download File View File

CRYSTAL STRUCTURE OF 1:1 COMPLEX BETWEEN GELSOLIN SEGMENT 1 AND A DICTYOSTELIUM/TETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228K/T229A/A230Y/E360H)

Matsuura, Y., Stewart, M., Kawamoto, M., Kamiya, N., Saeki, K., Yasunaga, T., Wakabayashi, T.

(2000) J Mol Biology 296: 579-595

Released	2000-03-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Dictyostelium discoideum Homo sapiens Tetrahymena thermophila
Macromolecule	PROTEIN (CHIMERIC ACTIN) (protein) PROTEIN (GELSOLIN SEGMENT 1) (protein)
Unique Ligands	ATP, CA

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1CKR \| pdb_00001ckr	Download File View File

HIGH RESOLUTION SOLUTION STRUCTURE OF THE HEAT SHOCK COGNATE-70 KD SUBSTRATE BINDING DOMAIN OBTAINED BY MULTIDIMENSIONAL NMR TECHNIQUES

Morshauser, R.C., Hu, W., Wang, H., Pang, Y., Flynn, G.C., Zuiderweg, E.R.P.

(1999) J Mol Biology 289: 1387-1403

Released	1999-04-30
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	HEAT SHOCK SUBSTRATE BINDING DOMAIN OF HSC-70 (protein)

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1CR0 \| pdb_00001cr0	Download File View File

CRYSTAL STRUCTURE OF THE HELICASE DOMAIN OF THE GENE4 PROTEIN OF BACTERIOPHAGE T7

Sawaya, M.R., Guo, S., Tabor, S., Richardson, C.C., Ellenberger, T.

(1999) Cell 99: 167-177

Released	1999-11-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia phage T7
Macromolecule	DNA PRIMASE/HELICASE (protein)
Unique Ligands	SO4

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1CR1 \| pdb_00001cr1	Download File View File

CRYSTAL STRUCTURE OF THE HELICASE DOMAIN OF THE GENE 4 PROTEIN OF BACTERIOPHAGE T7: COMPLEX WITH DTTP

Sawaya, M.R., Guo, S., Tabor, S., Richardson, C.C., Ellenberger, T.

(1999) Cell 99: 167-177

Released	1999-11-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia phage T7
Macromolecule	DNA PRIMASE/HELICASE (protein)
Unique Ligands	SO4, TTP

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1CR2 \| pdb_00001cr2	Download File View File

CRYSTAL STRUCTURE OF THE HELICASE DOMAIN OF THE GENE 4 PROTEIN OF BACTERIOPHAGE T7: COMPLEX WITH DATP

Sawaya, M.R., Guo, S., Tabor, S., Richardson, C.C., Ellenberger, T.

(1999) Cell 99: 167-177

Released	1999-11-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia phage T7
Macromolecule	DNA PRIMASE/HELICASE (protein)
Unique Ligands	DTP, SO4

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1CR4 \| pdb_00001cr4	Download File View File

CRYSTAL STRUCTURE OF THE HELICASE DOMAIN OF THE GENE 4 PROTEIN OF BACTERIOPHAGE T7: COMPLEX WITH DTDP

Sawaya, M.R., Guo, S., Tabor, S., Richardson, C.C., Ellenberger, T.

(1999) Cell 99: 167-177

Released	1999-11-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia phage T7
Macromolecule	DNA PRIMASE/HELICASE (protein)
Unique Ligands	SO4, TYD

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1CZ7 \| pdb_00001cz7	Download File View File

THE CRYSTAL STRUCTURE OF A MINUS-END DIRECTED MICROTUBULE MOTOR PROTEIN NCD REVEALS VARIABLE DIMER CONFORMATIONS

Kozielski, F.K., De Bonis, S., Burmeister, W., Cohen-Addad, C., Wade, R.

(1999) Structure 7: 1407-1416

Released	1999-11-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Drosophila melanogaster
Macromolecule	MICROTUBULE MOTOR PROTEIN NCD (protein)
Unique Ligands	ADP, MG

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1D2N \| pdb_00001d2n	Download File View File

D2 DOMAIN OF N-ETHYLMALEIMIDE-SENSITIVE FUSION PROTEIN

Lenzen, C.U., Steinmann, D., Whiteheart, S.W., Weis, W.I.

(1998) Cell 94: 525-536

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Cricetulus griseus
Macromolecule	N-ETHYLMALEIMIDE-SENSITIVE FUSION PROTEIN (protein)
Unique Ligands	ANP, GOL, MG

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1D4X \| pdb_00001d4x	Download File View File

Crystal Structure of Caenorhabditis Elegans Mg-ATP Actin Complexed with Human Gelsolin Segment 1 at 1.75 A resolution.

Vorobiev, S., Ono, S., Almo, S.C.

(2003) Proc Natl Acad Sci U S A 100: 5760-5765

Released	2001-05-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Caenorhabditis elegans Homo sapiens
Macromolecule	C. ELEGANS ACTIN 1/3 (protein) GELSOLIN (protein)
Unique Ligands	ATP, CA, MG, SO2, SO4

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1DEJ \| pdb_00001dej	Download File View File

CRYSTAL STRUCTURE OF A DICTYOSTELIUM/TETRAHYMENA CHIMERA ACTIN (MUTANT 646: Q228K/T229A/A230Y/A231K/S232E/E360H) IN COMPLEX WITH HUMAN GELSOLIN SEGMENT 1

Matsuura, Y., Stewart, M., Kawamoto, M., Kamiya, N., Saeki, K., Yasunaga, T., Wakabayashi, T.

(2000) J Mol Biology 296: 579-595

Released	2000-03-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Dictyostelium discoideum Homo sapiens Tetrahymena thermophila
Macromolecule	CHIMERIC ACTIN (protein) GELSOLIN (protein)
Unique Ligands	ATP, CA

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1E0J \| pdb_00001e0j	Download File View File

gp4d helicase from phage T7 ADPNP complex

Singleton, M.R., Sawaya, M.R., Ellenberger, T., Wigley, D.B.

(2000) Cell 101: 589

Released	2000-06-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia phage T7
Macromolecule	DNA HELICASE (protein)
Unique Ligands	ANP, MG

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1E0K \| pdb_00001e0k	Download File View File

gp4d helicase from phage T7

Singleton, M.R., Sawaya, M.R., Ellenberger, T., Wigley, D.B.

(2000) Cell 101: 589

Released	2000-06-09
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia phage T7
Macromolecule	DNA HELICASE (protein)

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1E32 \| pdb_00001e32	Download File View File

Structure of the N-Terminal domain and the D1 AAA domain of membrane fusion ATPase p97

Zhang, X., Shaw, A., Bates, P.A., Gorman, M.A., Kondo, H., Dokurno, P., Leonard M, G., Sternberg, J.E., Freemont, P.S.

(2000) Mol Cell 6: 1473

Released	2001-05-31
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mus musculus
Macromolecule	P97 (protein)
Unique Ligands	ADP

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1EJ6 \| pdb_00001ej6	Download File View File

Reovirus core

Reinisch, K.M., Nibert, M.L., Harrison, S.C.

(2000) Nature 404: 960-967

Released	2000-07-12
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Reovirus sp.
Macromolecule	LAMBDA1 (protein) LAMBDA2 (protein) SIGMA2 (protein)
Unique Ligands	ZN

1 to 25 of 3,767 Structures

Page 1 of 151

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A62 | pdb_00001a62

1A63 | pdb_00001a63

1A8V | pdb_00001a8v

1ATN | pdb_00001atn

1ATR | pdb_00001atr

1ATS | pdb_00001ats

1BA0 | pdb_00001ba0

1BA1 | pdb_00001ba1

1BUP | pdb_00001bup

1BYQ | pdb_00001byq

1C0F | pdb_00001c0f

1C0G | pdb_00001c0g

1CKR | pdb_00001ckr

1CR0 | pdb_00001cr0

1CR1 | pdb_00001cr1

1CR2 | pdb_00001cr2

1CR4 | pdb_00001cr4

1CZ7 | pdb_00001cz7

1D2N | pdb_00001d2n

1D4X | pdb_00001d4x

1DEJ | pdb_00001dej

1E0J | pdb_00001e0j

1E0K | pdb_00001e0k

1E32 | pdb_00001e32

1EJ6 | pdb_00001ej6