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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 3.6.4.4

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Search Summary

This query matches 431 Structures.

Refinements

Structure Determination Methodology

experimental (431)

Scientific Name of Source Organism

	Pseudomonas aeruginosa PAO1 (50)
	Escherichia coli (47)
	Lama glama (34)
	Severe acute respiratory syndrome coronavirus 2 (31)
	Pseudomonas aeruginosa (26)
	Homo sapiens (22)
	Omphalotus olearius (22)
	Streptantibioticus cattleyicolor (16)
	Pseudomonas fluorescens (13)
	Tequatrovirus T4 (11)

More...

Taxonomy

	Bacteria (299)
	Eukaryota (108)
	Riboviria (31)
	Archaea (16)
	Duplodnaviria (13)
	Adnaviria (6)
	Viruses incertae sedis (5)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (411)
	ELECTRON MICROSCOPY (20)

Polymer Entity Type

	Protein (431)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (28)
	1.5 - 2.0 (136)
	2.0 - 2.5 (147)
	2.5 - 3.0 (87)
	3.0 - 3.5 (23)
	3.5 - 4.0 (6)
	4.0 - 4.5 (2)
	> 4.5 (2)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (7)
	2000 - 2004 (35)
	2005 - 2009 (94)
	2010 - 2014 (109)
	2015 - 2019 (89)
	2020 - 2024 (87)
	2025 - 2029 (6)

Enzyme Classification Name

	Transferases (91)
	Lyases (33)
	Hydrolases (45)
	Isomerases (42)
	Oxidoreductases (26)
	Ligases (9)

Membrane Protein Annotation

	PDBTM (42)
	mpstruc (38)
	MemProtMD (32)
	OPM (21)

Symmetry Type

	Cyclic (221)
	Asymmetric (156)
	Dihedral (57)
	Tetrahedral (3)

SCOP Classification

	Alpha and beta proteins (a/b) (109)
	All beta proteins (53)
	Alpha and beta proteins (a+b) (36)
	Artifacts (29)
	Membrane and cell surface proteins and peptides (22)
	All alpha proteins (6)
	Small proteins (2)

AllSelected

1 to 25 of 431 Structures

Page 1 of 18

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1A3S \| pdb_00001a3s	Download File View File

HUMAN UBC9

Naismith, J.H., Giraud, M.

(1998) Acta Crystallogr D Biol Crystallogr 54: 891-898

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	UBC9 (protein)

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1BXH \| pdb_00001bxh	Download File View File

CONCANAVALIN A COMPLEXED TO METHYL ALPHA1-2 MANNOBIOSIDE

Moothoo, D.N., Canaan, B., Field, R.A., Naismith, J.H.

(1999) Glycobiology 9: 539-545

Released	1998-10-07
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Canavalia ensiformis
Macromolecule	Concanavalin-A (protein)
Unique Ligands	CA, MMA, MN
Unique branched monosaccharides	AMG, MMA

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1CON \| pdb_00001con	Download File View File

THE REFINED STRUCTURE OF CADMIUM SUBSTITUTED CONCANAVALIN A AT 2.0 ANGSTROMS RESOLUTION

Naismith, J.H., Habash, J., Harrop, S.J., Helliwell, J.R., Hunter, W.N., Kalb(Gilboa), A.J., Yariv, J., Wan, T.C.M., Weisgerber, S.

(1993) Acta Crystallogr D Biol Crystallogr 49: 561-571

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Canavalia ensiformis
Macromolecule	CONCANAVALIN A (protein)
Unique Ligands	CA, CD

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1CVN \| pdb_00001cvn	Download File View File

CONCANAVALIN A COMPLEXED TO TRIMANNOSIDE

Naismith, J.H.

(1996) J Biological Chem 271: 972-976

Released	1996-10-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Canavalia ensiformis
Macromolecule	CONCANAVALIN A (protein)
Unique Ligands	CA, MN
Unique branched monosaccharides	MAN

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1DZR \| pdb_00001dzr	Download File View File

RmlC from Salmonella typhimurium

Naismith, J.H., Giraud, M.F.

(2000) Nat Struct Biol 7: 398

Released	2000-04-18
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	DTDP-4-DEHYDRORHAMNOSE 3\,5-EPIMERASE (protein)
Unique Ligands	GOL, SO4

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1DZT \| pdb_00001dzt	Download File View File

RMLC FROM SALMONELLA TYPHIMURIUM

Naismith, J.H., Giraud, M.F.

(2000) Nat Struct Biol 7: 398

Released	2000-04-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	DTDP-4-DEHYDRORHAMNOSE 3\,5-EPIMERASE (protein)
Unique Ligands	ATY, GOL, SO4, TPE

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1EXT \| pdb_00001ext	Download File View File

EXTRACELLULAR DOMAIN OF THE 55KDA TUMOR NECROSIS FACTOR RECEPTOR. CRYSTALLIZED AT PH3.7 IN P 21 21 21.

Naismith, J.H., Sprang, S.R.

(1996) Structure 4: 1251-1262

Released	1997-01-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	TUMOR NECROSIS FACTOR RECEPTOR (protein)
Unique Ligands	MG, SO4

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1FQ0 \| pdb_00001fq0	Download File View File

KDPG ALDOLASE FROM ESCHERICHIA COLI

Naismith, J.H.

(2001) Structure 9: 1-10

Released	2000-10-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	KDPG ALDOLASE (protein)
Unique Ligands	CIT

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1FWR \| pdb_00001fwr	Download File View File

CRYSTAL STRUCTURE OF KDPG ALDOLASE DOUBLE MUTANT K133Q/T161K

Naismith, J.H., Buchanan, L.V.

(2001) Structure 9: 1-10

Released	2000-10-04
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	KDPG ALDOLASE (protein)
Unique Ligands	CIT

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1FXO \| pdb_00001fxo	Download File View File

THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). TMP COMPLEX.

Blankenfeldt, W., Lam, J.S., Naismith, J.H.

(2000) EMBO J 19: 6652-6663

Released	2000-12-27
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (protein)
Unique Ligands	SO4, TMP

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1FZW \| pdb_00001fzw	Download File View File

THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). APO ENZYME.

Blankenfeldt, W., Asuncion, M., Lam, J.S., Naismith, J.H.

(2000) EMBO J 19: 6652-6663

Released	2000-12-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (protein)
Unique Ligands	SO4

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1G0R \| pdb_00001g0r	Download File View File

THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). THYMIDINE/GLUCOSE-1-PHOSPHATE COMPLEX.

Blankenfeldt, W., Asuncion, M., Lam, J.S., Naismith, J.H.

(2000) EMBO J 19: 6652-6663

Released	2000-12-27
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (protein)
Unique Ligands	G1P, SO4, THM

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1G1A \| pdb_00001g1a	Download File View File

THE CRYSTAL STRUCTURE OF DTDP-D-GLUCOSE 4,6-DEHYDRATASE (RMLB)FROM SALMONELLA ENTERICA SEROVAR TYPHIMURIUM

Allard, S.T.M., Giraud, M.-F., Whitfield, C., Graninger, M., Messner, P., Naismith, J.H.

(2001) J Mol Biology 307: 283-295

Released	2001-03-21
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	DTDP-D-GLUCOSE 4,6-DEHYDRATASE (protein)
Unique Ligands	NAD, SO4

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1G23 \| pdb_00001g23	Download File View File

THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). GLUCOSE-1-PHOSPHATE COMPLEX.

Blankenfeldt, W., Asuncion, M., Lam, J.S., Naismith, J.H.

(2000) EMBO J 19: 6652-6663

Released	2000-12-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (protein)
Unique Ligands	G1P, SO4

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1G2V \| pdb_00001g2v	Download File View File

THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). TTP COMPLEX.

Blankenfeldt, W., Asuncion, M., Lam, J.S., Naismith, J.H.

(2000) EMBO J 19: 6652-6663

Released	2000-12-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (protein)
Unique Ligands	TTP

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1G3L \| pdb_00001g3l	Download File View File

THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). TDP-L-RHAMNOSE COMPLEX.

Blankenfeldt, W., Asuncion, M., Lam, J.S., Naismith, J.H.

(2000) EMBO J 19: 6652-6663

Released	2000-12-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (protein)
Unique Ligands	SO4, TRH

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1I3H \| pdb_00001i3h	Download File View File

CONCANAVALIN A-DIMANNOSE STRUCTURE

Sanders, D.A.R., Moothoo, D.N., Raftery, J., Howard, A.J., Helliwell, J.R., Naismith, J.H.

(2001) J Mol Biology 310: 875-884

Released	2001-07-25
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Canavalia ensiformis
Macromolecule	Concanavalin-A (protein)
Unique Ligands	CA, MN
Unique branched monosaccharides	MAN

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1I8T \| pdb_00001i8t	Download File View File

STRUCTURE OF UDP-GALACTOPYRANOSE MUTASE FROM E.COLI

Sanders, D.A.R., Staines, A.G., McMahon, S.A., McNeil, M.R., Whitfield, C., Naismith, J.H.

(2001) Nat Struct Biol 8: 858-863

Released	2001-10-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	UDP-GALACTOPYRANOSE MUTASE (protein)
Unique Ligands	FAD

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1KBZ \| pdb_00001kbz	Download File View File

Crystal Structure of apo-dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) from Salmonella enterica serovar Typhimurium

Blankenfeldt, W., Kerr, I.D., Giraud, M.F., McMiken, H.J., Leonard, G.A., Whitfield, C., Messner, P., Graninger, M., Naismith, J.H.

(2002) Structure 10: 773-786

Released	2002-06-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	dTDP-glucose oxidoreductase (protein)
Unique Ligands	MG

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1KC1 \| pdb_00001kc1	Download File View File

Crystal structure of dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) in complex with NADPH

Blankenfeldt, W., Kerr, I.D., Giraud, M.F., McMiken, H.J., Leonard, G.A., Whitfield, C., Messner, P., Graninger, M., Naismith, J.H.

(2002) Structure 10: 773-786

Released	2002-06-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	dTDP-glucose oxidoreductase (protein)
Unique Ligands	MG, NDP, SO4

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1KC3 \| pdb_00001kc3	Download File View File

Crystal structure of dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) in complex with NADPH and dTDP-L-rhamnose

Blankenfeldt, W., Kerr, I.D., Giraud, M.F., McMiken, H.J., Leonard, G.A., Whitfield, C., Messner, P., Graninger, M., Naismith, J.H.

(2002) Structure 10: 773-786

Released	2002-06-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	dTDP-glucose oxidoreductase (protein)
Unique Ligands	MG, NDP, TRH

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1KCZ \| pdb_00001kcz	Download File View File

Crystal Structure of beta-methylaspartase from Clostridium tetanomorphum. Mg-complex.

Asuncion, M., Blankenfeldt, W., Barlow, J.N., Gani, D., Naismith, J.H.

(2002) J Biological Chem 277: 8306-8311

Released	2001-12-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium tetanomorphum
Macromolecule	beta-methylaspartase (protein)
Unique Ligands	EDO, MG

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1KD0 \| pdb_00001kd0	Download File View File

Crystal Structure of beta-methylaspartase from Clostridium tetanomorphum. Apo-structure.

Asuncion, M., Blankenfeldt, W., Barlow, J.N., Gani, D., Naismith, J.H.

(2002) J Biological Chem 277: 8306-8311

Released	2001-12-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium tetanomorphum
Macromolecule	beta-methylaspartase (protein)
Unique Ligands	EDO

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1KEP \| pdb_00001kep	Download File View File

The crystal structure of dTDP-D-glucose 4,6-dehydratase (RmlB) from Streptococcus suis with dTDP-xylose bound

Allard, S.T.M., Beis, K., Giraud, M.-F., Hegeman, A.D., Gross, J.W., Whitfield, C., Graninger, M., Messner, P., Allen, A.G., Naismith, J.H.

(2002) Structure 10: 81-92

Released	2002-01-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptococcus suis
Macromolecule	dTDP-D-glucose 4,6-dehydratase (protein)
Unique Ligands	NAD, SO4, TDX

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1KER \| pdb_00001ker	Download File View File

The crystal structure of dTDP-D-glucose 4,6-dehydratase (RmlB) from Streptococcus suis with dTDP-D-glucose bound

Allard, S.T.M., Beis, K., Giraud, M.-F., Hegeman, A.D., Gross, J.W., Whitfield, C., Graninger, M., Messner, P., Allen, A.G., Naismith, J.H.

(2002) Structure 10: 81-92

Released	2002-01-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptococcus suis
Macromolecule	dTDP-D-glucose 4,6-dehydratase (protein)
Unique Ligands	DAU, NAD, SO4

1 to 25 of 431 Structures

Page 1 of 18

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A3S | pdb_00001a3s

1BXH | pdb_00001bxh

1CON | pdb_00001con

1CVN | pdb_00001cvn

1DZR | pdb_00001dzr

1DZT | pdb_00001dzt

1EXT | pdb_00001ext

1FQ0 | pdb_00001fq0

1FWR | pdb_00001fwr

1FXO | pdb_00001fxo

1FZW | pdb_00001fzw

1G0R | pdb_00001g0r

1G1A | pdb_00001g1a

1G23 | pdb_00001g23

1G2V | pdb_00001g2v

1G3L | pdb_00001g3l

1I3H | pdb_00001i3h

1I8T | pdb_00001i8t

1KBZ | pdb_00001kbz

1KC1 | pdb_00001kc1

1KC3 | pdb_00001kc3

1KCZ | pdb_00001kcz

1KD0 | pdb_00001kd0

1KEP | pdb_00001kep

1KER | pdb_00001ker