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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 5.3.1.6

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Search Summary

This query matches 56 Structures.

Refinements

Structure Determination Methodology

experimental (56)

Scientific Name of Source Organism

	Mycobacterium tuberculosis H37Rv (6)
	Acetivibrio thermocellus ATCC 27405 (4)
	Escherichia coli (4)
	Trypanosoma cruzi strain CL Brener (4)
	Thermus thermophilus (3)
	Burkholderia thailandensis E264 (2)
	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (2)
	Pyrococcus horikoshii (2)
	Vibrio vulnificus (2)
	Anaplasma phagocytophilum str. HZ (1)

More...

Taxonomy

	Bacteria (40)
	Eukaryota (13)
	Archaea (3)

Experimental Method

X-RAY DIFFRACTION (56)

Polymer Entity Type

Protein (56)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (21)
	2.0 - 2.5 (25)
	2.5 - 3.0 (3)

Release Date

	2000 - 2004 (14)
	2005 - 2009 (13)
	2010 - 2014 (19)
	2015 - 2019 (8)
	2020 - 2024 (2)

Enzyme Classification Name

Isomerases (56)

Symmetry Type

	Cyclic (43)
	Dihedral (15)
	Asymmetric (7)

SCOP Classification

	Alpha and beta proteins (a/b) (34)
	Alpha and beta proteins (a+b) (9)
	Artifacts (5)

AllSelected

1 to 25 of 56 Structures

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1KS2 \| pdb_00001ks2	Download File View File

Crystal Structure Analysis of the rpiA, Structural Genomics, protein EC1268.

Zhang, R., Joachimiak, A., Edwards, A.M., Skarina, T., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

(2003) Structure 11: 31-42

Released	2002-08-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	protein EC1268, RPIA (protein)

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1LK5 \| pdb_00001lk5	Download File View File

Structure of the D-Ribose-5-Phosphate Isomerase from Pyrococcus horikoshii

Ishikawa, K., Matsui, I., Payan, F., Cambillau, C., Ishida, H., Kawarabayasi, Y., Kikuchi, H., Roussel, A.

(2002) Structure 10: 877-886

Released	2002-07-03
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Pyrococcus horikoshii
Macromolecule	D-Ribose-5-Phosphate Isomerase (protein)
Unique Ligands	CL, NA

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1LK7 \| pdb_00001lk7	Download File View File

Structure of D-Ribose-5-Phosphate Isomerase from in complex with phospho-erythronic acid

Ishikawa, K., Matsui, I., Payan, F., Cambillau, C., Ishida, H., Kawarabayasi, Y., Kikuchi, H., Roussel, A.

(2002) Structure 10: 877-886

Released	2002-07-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii
Macromolecule	D-Ribose-5-Phosphate Isomerase (protein)
Unique Ligands	CL, DER, NA

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1LKZ \| pdb_00001lkz	Download File View File

Crystal structure of D-ribose-5-phosphate isomerase (RpiA) from Escherichia coli.

Rangarajan, E.S., Sivaraman, J., Matte, A., Cygler, M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2002) Proteins 48: 737-740

Released	2002-05-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Ribose 5-phosphate isomerase A (protein)

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1M0S \| pdb_00001m0s	Download File View File

NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG ID IR21)

Das, K., Xiao, R., Acton, T., Montelione, G., Arnold, E., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Haemophilus influenzae
Macromolecule	Ribose-5-Phosphate Isomerase A (protein)
Unique Ligands	CIT

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1NN4 \| pdb_00001nn4	Download File View File

Structural Genomics, RpiB/AlsB

Zhang, R.G., Andersson, C.E., Mowbray, S.L., Savchenko, A., Skarina, T., Evdokimova, E., Beasley, S.L., Arrowsmith, C., Edwards, A.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2003) J Mol Biology 332: 1083-1094

Released	2003-07-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Ribose 5-phosphate isomerase B (protein)

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1O1X \| pdb_00001o1x	Download File View File

Crystal structure of a ribose 5-phosphate isomerase rpib (tm1080) from thermotoga maritima at 1.90 A resolution

Joint Center for Structural Genomics (JCSG)

(2004) Proteins 56: 171-175

Released	2003-04-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	ribose-5-phosphate isomerase RpiB (protein)
Unique Ligands	MPD

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1O8B \| pdb_00001o8b	Download File View File

Structure of Escherichia coli ribose-5-phosphate isomerase, RpiA, complexed with arabinose-5-phosphate.

Zhang, R.-g., Andersson, C.E., Savchenko, A., Skarina, T., Evdokimova, E., Beasley, S., Arrowsmith, C.H., Edwards, A.M., Joachimiak, A., Mowbray, S.L., Midwest Center for Structural Genomics (MCSG)

(2003) Structure 11: 31

Released	2003-01-24
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Escherichia coli
Macromolecule	RIBOSE 5-PHOSPHATE ISOMERASE (protein)
Unique Ligands	ABF

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1UJ4 \| pdb_00001uj4	Download File View File

Crystal structure of Thermus thermophilus ribose-5-phosphate isomerase

Hamada, K., Ago, H., Sugahara, M., Nodake, Y., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) J Biological Chem 278: 49183-49190

Released	2004-07-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus
Macromolecule	ribose 5-phosphate isomerase (protein)
Unique Ligands	CL

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1UJ5 \| pdb_00001uj5	Download File View File

Crystal structure of Thermus thermophilus ribose-5-phosphate isomerase complexed with ribose-5-phosphate

Hamada, K., Ago, H., Sugahara, M., Nodake, Y., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) J Biological Chem 278: 49183-49190

Released	2004-07-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus
Macromolecule	ribose 5-phosphate isomerase (protein)
Unique Ligands	5RP, CL

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1UJ6 \| pdb_00001uj6	Download File View File

Crystal structure of Thermus thermophilus ribose-5-phosphate isomerase complexed with arabinose-5-phosphate

Hamada, K., Ago, H., Sugahara, M., Nodake, Y., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) J Biological Chem 278: 49183-49190

Released	2004-07-13
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Thermus thermophilus
Macromolecule	ribose 5-phosphate isomerase (protein)
Unique Ligands	A5P, CL

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1USL \| pdb_00001usl	Download File View File

Structure Of Mycobacterium tuberculosis Ribose-5-Phosphate Isomerase, RpiB, Rv2465c, Complexed With Phosphate.

Roos, A.K., Andersson, C.E., Unge, T., Jones, T.A., Mowbray, S.L.

(2004) J Mol Biology 335: 799

Released	2004-01-02
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	RIBOSE 5-PHOSPHATE ISOMERASE B (protein)
Unique Ligands	PO4

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1XTZ \| pdb_00001xtz	Download File View File

Crystal structure of the S. cerevisiae D-ribose-5-phosphate isomerase: comparison with the archeal and bacterial enzymes

Graille, M., Meyer, P., Leulliot, N., Sorel, I., Janin, J., van Tilbeurgh, H., Quevillon-Cheruel, S.

(2005) Biochimie 87: 763-769

Released	2005-08-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Ribose-5-phosphate isomerase (protein)

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2BES \| pdb_00002bes	Download File View File

Structure of Mycobacterium tuberculosis Ribose-5-Phosphate Isomerase, RpiB, Rv2465c, in complex with 4-phospho-D-erythronohydroxamic acid.

Roos, A.K., Ericsson, D.J., Mowbray, S.L.

(2005) J Biological Chem 280: 6416

Released	2004-12-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	CARBOHYDRATE-PHOSPHATE ISOMERASE (protein)
Unique Ligands	RES

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2BET \| pdb_00002bet	Download File View File

Structure of Mycobacterium tuberculosis Ribose-5-Phosphate Isomerase, RpiB, Rv2465c, in complex with 4-phospho-D-erythronate.

Roos, A.K., Ericsson, D.J., Mowbray, S.L.

(2005) J Biological Chem 280: 6416

Released	2004-12-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	CARBOHYDRATE-PHOSPHATE ISOMERASE (protein)
Unique Ligands	DEZ

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2F8M \| pdb_00002f8m	Download File View File

Ribose 5-phosphate isomerase from Plasmodium falciparum

Holmes, M.A., Merritt, E.A., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 427-431

Released	2005-12-27
Method	X-RAY DIFFRACTION 2.087 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	ribose 5-phosphate isomerase (protein)
Unique Ligands	PO4

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2VVO \| pdb_00002vvo	Download File View File

Crystal structure of Mycobacterium tuberculosis ribose-5-phosphate isomerase B in complex with alpha d-allose 6-phosphate

Roos, A.K., Mariano, S., Kowalinski, E., Salmon, L., Mowbray, S.L.

(2008) J Mol Biology 382: 667

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	RIBOSE-5-PHOSPHATE ISOMERASE B (protein)
Unique Ligands	A6P

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2VVP \| pdb_00002vvp	Download File View File

Crystal structure of Mycobacterium tuberculosis ribose-5-phosphate isomerase B in complex with its substrates ribose 5-phosphate and ribulose 5-phosphate

Kowalinski, E., Roos, A.K., Mariano, S., Salmon, L., Mowbray, S.L.

(2008) J Mol Biology 382: 667

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	RIBOSE-5-PHOSPHATE ISOMERASE B (protein)
Unique Ligands	5RP, R52

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2VVQ \| pdb_00002vvq	Download File View File

Crystal structure of Mycobacterium tuberculosis ribose-5-phosphate isomerase B in complex with the inhibitor 5-deoxy-5-phospho-D- ribonate

Kowalinski, E., Roos, A.K., Mariano, S., Salmon, L., Mowbray, S.L.

(2008) J Mol Biology 382: 667

Released	2008-07-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	RIBOSE-5-PHOSPHATE ISOMERASE B (protein)
Unique Ligands	R10, SO4

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2VVR \| pdb_00002vvr	Download File View File

Crystal structure of the H99N mutant of ribose-5-phosphate isomerase B from E. coli soaked with ribose 5-phosphate

Roos, A.K., Mowbray, S.L.

(2008) J Mol Biology 382: 667

Released	2008-07-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	RIBOSE-5-PHOSPHATE ISOMERASE B (protein)

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3ENQ \| pdb_00003enq	Download File View File

Substrate and inhibitor complexes of ribose 5-phosphate isomerase A from Vibrio vulnificus YJ016

Min, K., Kwon, T.H., Kim, T.G.

(2009) Mol Cells 27: 99-103

Released	2009-09-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vibrio vulnificus YJ016
Macromolecule	Ribose-5-phosphate isomerase A (protein)

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3ENV \| pdb_00003env	Download File View File

Substrate and inhibitor complexes of ribose 5-phosphate isomerase from Vibrio vulnificus YJ016

Min, K., Kwon, T.H., Kim, T.G.

(2009) Mol Cells 27: 99-103

Released	2009-09-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vibrio vulnificus
Macromolecule	Ribose-5-phosphate isomerase A (protein)
Unique Ligands	ABF

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3ENW \| pdb_00003enw	Download File View File

Substrate and inhibitor complexes of ribose 5-phosphate isomerase from Vibrio vulnificus YJ016

Min, K., Kwon, T.H., Kim, T.G.

(2009) Mol Cells 27: 99-103

Released	2009-09-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vibrio vulnificus
Macromolecule	Ribose-5-phosphate isomerase A (protein)
Unique Ligands	5RP

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3HE8 \| pdb_00003he8	Download File View File

Structural study of Clostridium thermocellum Ribose-5-Phosphate Isomerase B

Kang, L.W., Kim, J.K., Jung, J.H., Hong, M.K.

(2011) Appl Microbiol Biotechnol 90: 517-527

Released	2009-11-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Ribose-5-phosphate isomerase (protein)
Unique Ligands	GOL

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3HEE \| pdb_00003hee	Download File View File

Structural study of Clostridium thermocellum Ribose-5-Phosphate Isomerase B and ribose-5-phosphate

Kang, L.W., Kim, J.K., Jung, J.H., Hong, M.K.

(2011) Appl Microbiol Biotechnol 90: 517-527

Released	2009-11-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Ribose-5-phosphate isomerase (protein)
Unique Ligands	R5P

1 to 25 of 56 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1KS2 | pdb_00001ks2

1LK5 | pdb_00001lk5

1LK7 | pdb_00001lk7

1LKZ | pdb_00001lkz

1M0S | pdb_00001m0s

1NN4 | pdb_00001nn4

1O1X | pdb_00001o1x

1O8B | pdb_00001o8b

1UJ4 | pdb_00001uj4

1UJ5 | pdb_00001uj5

1UJ6 | pdb_00001uj6

1USL | pdb_00001usl

1XTZ | pdb_00001xtz

2BES | pdb_00002bes

2BET | pdb_00002bet

2F8M | pdb_00002f8m

2VVO | pdb_00002vvo

2VVP | pdb_00002vvp

2VVQ | pdb_00002vvq

2VVR | pdb_00002vvr

3ENQ | pdb_00003enq

3ENV | pdb_00003env

3ENW | pdb_00003enw

3HE8 | pdb_00003he8

3HEE | pdb_00003hee