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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 6.3.2.19

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Search Summary

This query matches 193 Structures.

Refinements

Structure Determination Methodology

experimental (193)

Scientific Name of Source Organism

	Homo sapiens (142)
	Saccharomyces cerevisiae (15)
	Mus musculus (12)
	Caenorhabditis elegans (8)
	Plasmodium falciparum 3D7 (7)
	Saccharomyces cerevisiae S288C (6)
	Rattus norvegicus (4)
	Shigella flexneri (4)
	Bos taurus (3)
	Arabidopsis thaliana (2)

More...

Taxonomy

	Eukaryota (189)
	Bacteria (12)
	Eukaryota (eukaryotes) (3)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (179)
	SOLUTION NMR (14)
	THEORETICAL MODEL (1)

Polymer Entity Type

	Protein (193)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (63)
	2.0 - 2.5 (51)
	2.5 - 3.0 (38)
	3.0 - 3.5 (17)
	3.5 - 4.0 (1)
	> 4.5 (2)

Release Date

	1995 - 1999 (9)
	2000 - 2004 (18)
	2005 - 2009 (69)
	2010 - 2014 (67)
	2015 - 2019 (28)
	2020 - 2024 (2)

Enzyme Classification Name

	Transferases (168)
	Ligases (193)
	Hydrolases (9)

Symmetry Type

	Asymmetric (178)
	Cyclic (23)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (152)
	Artifacts (60)
	All alpha proteins (15)
	Small proteins (7)
	All beta proteins (5)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 193 Structures

Page 1 of 8

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1A3S \| pdb_00001a3s	Download File View File

HUMAN UBC9

Naismith, J.H., Giraud, M.

(1998) Acta Crystallogr D Biol Crystallogr 54: 891-898

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	UBC9 (protein)

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1AYZ \| pdb_00001ayz	Download File View File

CRYSTAL STRUCTURE OF THE SACCHAROMYCES CEREVISIAE UBIQUITIN-CONJUGATING ENZYME RAD6 (UBC2) AT 2.6A RESOLUTION

Worthylake, D.K., Prakash, S., Prakash, L., Hill, C.P.

(1998) J Biological Chem 273: 6271-6276

Released	1998-08-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	UBIQUITIN-CONJUGATING ENZYME RAD6 (protein)

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1C4Z \| pdb_00001c4z	Download File View File

STRUCTURE OF AN E6AP-UBCH7 COMPLEX: INSIGHTS INTO THE UBIQUITINATION PATHWAY

Huang, L., Kinnucan, E., Wang, G., Beaudenon, S., Howley, P.M., Huibregtse, J.M., Pavletich, N.P.

(1999) Science 286: 1321-1326

Released	1999-11-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN CONJUGATING ENZYME E2 (protein) UBIQUITIN-PROTEIN LIGASE E3A (protein)

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1FBV \| pdb_00001fbv	Download File View File

STRUCTURE OF A CBL-UBCH7 COMPLEX: RING DOMAIN FUNCTION IN UBIQUITIN-PROTEIN LIGASES

Zheng, N., Wang, P., Jeffrey, P.D., Pavletich, N.P.

(2000) Cell 102: 533-539

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	SIGNAL TRANSDUCTION PROTEIN CBL (protein) UBIQUITIN-CONJUGATING ENZYME E12-18 KDA UBCH7 (protein) ZAP-70 PEPTIDE (protein)
Unique Ligands	SO4, ZN

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1FXT \| pdb_00001fxt	Download File View File

STRUCTURE OF A CONJUGATING ENZYME-UBIQUITIN THIOLESTER COMPLEX

Hamilton, K.S., Shaw, G.S., Williams, R.S., Huzil, J.T., McKenna, S., Ptak, C., Glover, M., Ellison, M.J.

(2001) Structure 9: 897-904

Released	2001-10-10
Method	SOLUTION NMR
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	UBIQUITIN (protein) UBIQUITIN-CONJUGATING ENZYME E2-24 KDA (protein)

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1FZY \| pdb_00001fzy	Download File View File

CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE UBIQUITIN CONJUGATING ENZYME 1

Glover, M., Williams, R.S.

(2001) Structure 9: 897-904

Released	2001-10-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	UBIQUITIN-CONJUGATING ENZYME E2-24 KDA (protein)

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1I7K \| pdb_00001i7k	Download File View File

CRYSTAL STRUCTURE OF HUMAN MITOTIC-SPECIFIC UBIQUITIN-CONJUGATING ENZYME, UBCH10

Basavappa, R., Lin, Y.

(2002) J Biological Chem 277: 21913-21921

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN-CONJUGATING ENZYME E2 H10 (protein)

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1IYF \| pdb_00001iyf	Download File View File

Solution structure of ubiquitin-like domain of human parkin

Sakata, E., Yamaguchi, Y., Kurimoto, E., Kikuchi, J., Yokoyama, S., Kawahara, H., Yokosawa, H., Hattori, N., Mizuno, Y., Tanaka, K., Kato, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) EMBO Rep 4: 301-306

Released	2003-03-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	parkin (protein)

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1J7D \| pdb_00001j7d	Download File View File

Crystal Structure of hMms2-hUbc13

Moraes, T.F., Edwards, R.A., McKenna, S., Pashushok, L., Xiao, W., Glover, J.N.M., Ellison, M.J.

(2001) Nat Struct Biol 8: 669-673

Released	2001-08-08
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	MMS2 (protein) UBIQUITIN-CONJUGATING ENZYME E2-17 KDA (protein)

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1JAS \| pdb_00001jas	Download File View File

HsUbc2b

Miura, T., Klaus, W., Ross, A., Guentert, P., Senn, H.

(2002) J Biomol NMR 22: 89-92

Released	2003-09-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	UBIQUITIN-CONJUGATING ENZYME E2-17 KDA (protein)

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1JAT \| pdb_00001jat	Download File View File

Mms2/Ubc13 Ubiquitin Conjugating Enzyme Complex

VanDemark, A.P., Hofmann, R.M., Tsui, C., Pickart, C.M., Wolberger, C.

(2001) Cell 105: 711-720

Released	2001-06-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Ubiquitin-Conjugating Enzyme E2-17.5 KDA (protein) Ubiquitin-Conjugating Enzyme Variant Mms2 (protein)

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1JBB \| pdb_00001jbb	Download File View File

Ubiquitin Conjugating Enzyme, Ubc13

VanDemark, A.P., Hofmann, R.M., Tsui, C., Pickart, C.M., Wolberger, C.

(2001) Cell 105: 711-720

Released	2001-06-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ubiquitin conjugating enzyme E2-17.5 KDA (protein)

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1KPS \| pdb_00001kps	Download File View File

Structural Basis for E2-mediated SUMO conjugation revealed by a complex between ubiquitin conjugating enzyme Ubc9 and RanGAP1

Bernier-Villamor, V., Sampson, D.A., Matunis, M.J., Lima, C.D.

(2002) Cell 108: 345-356

Released	2002-02-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Ran-GTPase activating protein 1 (protein) Ubiquitin-like protein SUMO-1 conjugating enzyme (protein)
Unique Ligands	SO4

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1PZV \| pdb_00001pzv	Download File View File

Crystal structures of two UBC (E2) enzymes of the ubiquitin-conjugating system in Caenorhabditis elegans

Schormann, N., Lin, G., Li, S., Symersky, J., Qiu, S., Finley, J., Luo, D., Stanton, A., Carson, M., Luo, M., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Caenorhabditis elegans
Macromolecule	Probable ubiquitin-conjugating enzyme E2-19 kDa (protein)

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1Q34 \| pdb_00001q34	Download File View File

Crystal structures of two UBC (E2) enzymes of the ubiquitin-conjugating system in Caenorhabditis elegans

Schormann, N., Lin, G., Li, S., Symersky, J., Qiu, S., Finley, J., Luo, D., Stanton, A., Carson, M., Luo, M., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2003-08-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Caenorhabditis elegans
Macromolecule	Ubiquitin-conjugating enzyme E2-21.5 kDa (protein)

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1QCQ \| pdb_00001qcq	Download File View File

UBIQUITIN CONJUGATING ENZYME

Cook, W.J., Jeffrey, L.C., Xu, Y., Chau, V.

(1993) Biochemistry 32: 13809-13817

Released	1999-05-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (UBIQUITIN CONJUGATING ENZYME) (protein)

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1TTE \| pdb_00001tte	Download File View File

The Structure of a Class II ubiquitin-conjugating enzyme, Ubc1.

Merkley, N., Shaw, G.S.

(2004) J Biological Chem 279: 47139-47147

Released	2004-08-31
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Ubiquitin-conjugating enzyme E2-24 kDa (protein)

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1U9A \| pdb_00001u9a	Download File View File

HUMAN UBIQUITIN-CONJUGATING ENZYME UBC9

Tong, H., Hateboer, G., Perrakis, A., Bernards, R., Sixma, T.K.

(1997) J Biological Chem 272: 21381-21387

Released	1997-05-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	UBIQUITIN-CONJUGATING ENZYME (protein)

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1U9B \| pdb_00001u9b	Download File View File

MURINE/HUMAN UBIQUITIN-CONJUGATING ENZYME UBC9

Tong, H., Hateboer, G., Perrakis, A., Bernards, R., Sixma, T.K.

(1997) J Biological Chem 272: 21381-21387

Released	1997-07-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	UBIQUITIN-CONJUGATING ENZYME E9 (protein)

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1UMH \| pdb_00001umh	Download File View File

Structural basis of sugar-recognizing ubiquitin ligase

Mizushima, T., Hirao, T., Yoshida, Y., Lee, S.J., Chiba, T., Iwai, K., Yamaguchi, Y., Kato, K., Tsukihara, T., Tanaka, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Nat Struct Mol Biol 11: 365-370

Released	2004-04-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	F-box only protein 2 (protein)
Unique Ligands	NI

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1UMI \| pdb_00001umi	Download File View File

Structural basis of sugar-recognizing ubiquitin ligase

Mizushima, T., Hirao, T., Yoshida, Y., Lee, S.J., Chiba, T., Iwai, K., Yamaguchi, Y., Kato, K., Tsukihara, T., Tanaka, K.

(2004) Nat Struct Mol Biol 11: 365-370

Released	2004-04-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	F-box only protein 2 (protein)
Unique branched monosaccharides	NAG, NDG

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1UR6 \| pdb_00001ur6	Download File View File

NMR based structural model of the UbcH5B-CNOT4 complex

Dominguez, C., Bonvin, A.M.J.J., Winkler, G.S., Van Schaik, F.M.A., Timmers, H.Th.M., Boelens, R.

(2004) Structure 12: 633

Released	2004-05-07
Method	SOLUTION NMR THEORETICAL MODEL
Organisms	Homo sapiens
Macromolecule	POTENTIAL TRANSCRIPTIONAL REPRESSOR NOT4HP (protein) UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 2 (protein)
Unique Ligands	ZN