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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 345 Structures.

Refinements

Structure Determination Methodology

experimental (345)

Scientific Name of Source Organism

	Homo sapiens (123)
	Gallus gallus (16)
	Mus musculus (16)
	Ralstonia solanacearum (16)
	synthetic construct (15)
	Escherichia coli K-12 (12)
	Oryctolagus cuniculus (11)
	Staphylococcus aureus (11)
	Arabidopsis thaliana (10)
	Saccharomyces cerevisiae S288C (6)

More...

Taxonomy

	Eukaryota (195)
	Bacteria (145)
	other sequences (15)
	Eukaryota (eukaryotes) (14)
	Archaea (5)
	Riboviria (3)
	Duplodnaviria (2)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (318)
	ELECTRON MICROSCOPY (17)
	SOLUTION NMR (9)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

	Protein (345)
	DNA (4)
	RNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (36)
	1.5 - 2.0 (117)
	2.0 - 2.5 (109)
	2.5 - 3.0 (42)
	3.0 - 3.5 (15)
	3.5 - 4.0 (3)
	> 4.5 (12)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (2)
	2000 - 2004 (18)
	2005 - 2009 (64)
	2010 - 2014 (111)
	2015 - 2019 (90)
	2020 - 2024 (56)
	2025 - 2029 (3)

Enzyme Classification Name

	Oxidoreductases (38)
	Transferases (38)
	Hydrolases (44)
	Isomerases (12)
	Lyases (5)
	Ligases (4)

Membrane Protein Annotation

	OPM (4)
	MemProtMD (2)
	PDBTM (2)
	mpstruc (2)

Symmetry Type

	Asymmetric (260)
	Cyclic (100)
	Dihedral (12)

SCOP Classification

	Low resolution protein structures (12)
	Alpha and beta proteins (a/b) (41)
	Artifacts (35)
	All beta proteins (29)
	Alpha and beta proteins (a+b) (25)
	All alpha proteins (18)
	Multi-domain proteins (alpha and beta) (4)
	Small proteins (5)

AllSelected

1 to 25 of 345 Structures

Page 1 of 14

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132L \| pdb_0000132l	Download File View File

STRUCTURAL CONSEQUENCES OF REDUCTIVE METHYLATION OF LYSINE RESIDUES IN HEN EGG WHITE LYSOZYME: AN X-RAY ANALYSIS AT 1.8 ANGSTROMS RESOLUTION

Rayment, I., Rypniewski, W.R., Holden, H.M.

(1993) Biochemistry 32: 9851-9858

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Gallus gallus
Macromolecule	HEN EGG WHITE LYSOZYME (protein)

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1GUW \| pdb_00001guw	Download File View File

STRUCTURE OF THE CHROMODOMAIN FROM MOUSE HP1beta IN COMPLEX WITH THE LYSINE 9-METHYL HISTONE H3 N-TERMINAL PEPTIDE, NMR, 25 STRUCTURES

Nielsen, P.R., Nietlispach, D., Mott, H.R., Callaghan, J.M., Bannister, A., Kouzarides, T., Murzin, A.G., Murzina, N.V., Laue, E.D.

(2002) Nature 416: 103-107

Released	2002-03-12
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	CHROMOBOX PROTEIN HOMOLOG 1 (protein) HISTONE H3.1 (protein)

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1I84 \| pdb_00001i84	Download File View File

CRYO-EM STRUCTURE OF THE HEAVY MEROMYOSIN SUBFRAGMENT OF CHICKEN GIZZARD SMOOTH MUSCLE MYOSIN WITH REGULATORY LIGHT CHAIN IN THE DEPHOSPHORYLATED STATE. ONLY C ALPHAS PROVIDED FOR REGULATORY LIGHT CHAIN. ONLY BACKBONE ATOMS PROVIDED FOR S2 FRAGMENT.

Wendt, T., Taylor, D., Trybus, K.M., Taylor, K.

(2001) Proc Natl Acad Sci U S A 98: 4361-4366

Released	2001-03-28
Method	ELECTRON CRYSTALLOGRAPHY 20 Å
Organisms	Gallus gallus
Macromolecule	SMOOTH MUSCLE MYOSIN ESSENTIAL LIGHT CHAIN (protein) SMOOTH MUSCLE MYOSIN HEAVY CHAIN (protein) SMOOTH MUSCLE MYOSIN REGULATORY LIGHT CHAIN (protein)

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1IV8 \| pdb_00001iv8	Download File View File

Crystal Structure of Maltooligosyl trehalose synthase

Kobayashi, M., Kubota, M., Matsuura, Y.

(2003) J Appl Glycosci (1999) 50: 1-8

Released	2003-02-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Sulfolobus acidocaldarius
Macromolecule	MALTOOLIGOSYL TREHALOSE SYNTHASE (protein)

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1KNA \| pdb_00001kna	Download File View File

Chromo domain of HP1 complexed with histone H3 tail containing dimethyllysine 9.

Jacobs, S.A., Khorasanizadeh, S.

(2002) Science 295: 2080-2083

Released	2002-03-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Drosophila melanogaster
Macromolecule	HETEROCHROMATIN PROTEIN 1 (protein) METHYLATED Histone H3 (protein)

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1LLN \| pdb_00001lln	Download File View File

1.6A CRYSTAL STRUCTURE OF POKEWEED ANTIVIRAL PROTEIN-III (PAP-III) WITH METHYLATED LYSINES

Kurinov, I.V., Uckun, F.M.

(2003) Biochem Pharmacol 65: 1709-1717

Released	2003-06-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Phytolacca americana
Macromolecule	Antiviral Protein 3 (protein)

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1M8Q \| pdb_00001m8q	Download File View File

Molecular Models of Averaged Rigor Crossbridges from Tomograms of Insect Flight Muscle

Chen, L.F., Winkler, H., Reedy, M.K., Reedy, M.C., Taylor, K.A.

(2002) J Struct Biol 138: 92-104

Released	2002-09-10
Method	ELECTRON MICROSCOPY 70 Å
Organisms	Gallus gallus Oryctolagus cuniculus
Macromolecule	Skeletal muscle Actin (protein) Skeletal muscle Myosin II (protein) Skeletal muscle Myosin II Essential Light Chain (protein) Skeletal muscle Myosin II Regulatory Light Chain (protein)

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1MVW \| pdb_00001mvw	Download File View File

MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE

Chen, L.F., Winkler, H., Reedy, M.K., Reedy, M.C., Taylor, K.A.

(2002) J Struct Biol 138: 92-104

Released	2002-11-20
Method	ELECTRON MICROSCOPY 70 Å
Organisms	Gallus gallus Oryctolagus cuniculus
Macromolecule	RABBIT SKELETAL MUSCLE ACTIN (protein) SKELETAL MUSCLE MYOSIN II (protein) SKELETAL MUSCLE MYOSIN II ESSENTIAL; LIGHT CHAIN (protein) SKELETAL MUSCLE MYOSIN II REGULATORY; LIGHT CHAIN (protein)

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1O18 \| pdb_00001o18	Download File View File

MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE

Chen, L.F., Winkler, H., Reedy, M.K., Reedy, M.C., Taylor, K.A.

(2002) J Struct Biol 138: 92

Released	2002-11-27
Method	ELECTRON MICROSCOPY 70 Å
Organisms	Gallus gallus Oryctolagus cuniculus
Macromolecule	SKELETAL MUSCLE ACTIN (protein) SKELETAL MUSCLE MYOSIN II (protein) SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN (protein) SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN (protein)

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1O19 \| pdb_00001o19	Download File View File

MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE

Chen, L.F., Winkler, H., Reedy, M.K., Reedy, M.C., Taylor, K.A.

(2002) J Struct Biol 138: 92

Released	2002-11-27
Method	ELECTRON MICROSCOPY 70 Å
Organisms	Gallus gallus Oryctolagus cuniculus
Macromolecule	SKELETAL MUSCLE ACTIN (protein) SKELETAL MUSCLE MYOSIN II (protein) SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN (protein) SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN (protein)

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1O1A \| pdb_00001o1a	Download File View File

MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE

Chen, L.F., Winkler, H., Reedy, M.K., Reedy, M.C., Taylor, K.A.

(2002) J Struct Biol 138: 92-104

Released	2002-12-04
Method	ELECTRON MICROSCOPY 70 Å
Organisms	Gallus gallus Oryctolagus cuniculus
Macromolecule	SKELETAL MUSCLE ACTIN (protein) SKELETAL MUSCLE MYOSIN II (protein) SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN (protein) SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN (protein)

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1O1B \| pdb_00001o1b	Download File View File

MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE

Chen, L.F., Winkler, H., Reedy, M.K., Reedy, M.C., Taylor, K.A.

(2002) J Struct Biol 138: 92-104

Released	2002-12-04
Method	ELECTRON MICROSCOPY 70 Å
Organisms	Gallus gallus Oryctolagus cuniculus
Macromolecule	SKELETAL MUSCLE ACTIN (protein) SKELETAL MUSCLE MYOSIN II (protein) SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN (protein) SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN (protein)

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1O1C \| pdb_00001o1c	Download File View File

MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE

Chen, L.F., Winkler, H., Reedy, M.K., Reedy, M.C., Taylor, K.A.

(2002) J Struct Biol 138: 92-104

Released	2002-12-04
Method	ELECTRON MICROSCOPY 70 Å
Organisms	Gallus gallus Oryctolagus cuniculus
Macromolecule	SKELETAL MUSCLE ACTIN (protein) SKELETAL MUSCLE MYOSIN II (protein) SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN (protein) SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN (protein)

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1O1D \| pdb_00001o1d	Download File View File

MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE

Chen, L.F., Winkler, H., Reedy, M.K., Reedy, M.C., Taylor, K.A.

(2002) J Struct Biol 138: 92-104

Released	2002-12-04
Method	ELECTRON MICROSCOPY 70 Å
Organisms	Gallus gallus Oryctolagus cuniculus
Macromolecule	SKELETAL MUSCLE ACTIN (protein) SKELETAL MUSCLE MYOSIN II (protein) SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN (protein) SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN (protein)

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1O1E \| pdb_00001o1e	Download File View File

MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE

Chen, L.F., Winkler, H., Reedy, M.K., Reedy, M.C., Taylor, K.A.

(2002) J Struct Biol 138: 92-104

Released	2002-12-04
Method	ELECTRON MICROSCOPY 70 Å
Organisms	Gallus gallus Oryctolagus cuniculus
Macromolecule	SKELETAL MUSCLE ACTIN (protein) SKELETAL MUSCLE MYOSIN II (protein) SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN (protein) SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN (protein)

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1O1F \| pdb_00001o1f	Download File View File

MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE

Chen, L.F., Winkler, H., Reedy, M.K., Reedy, M.C., Taylor, K.A.

(2002) J Struct Biol 138: 92-104

Released	2002-12-04
Method	ELECTRON MICROSCOPY 70 Å
Organisms	Gallus gallus Oryctolagus cuniculus
Macromolecule	SKELETAL MUSCLE ACTIN (protein) SKELETAL MUSCLE MYOSIN II (protein) SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN (protein) SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN (protein)

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1O1G \| pdb_00001o1g	Download File View File

MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE

Chen, L.F., Winkler, H., Reedy, M.K., Reedy, M.C., Taylor, K.A.

(2002) J Struct Biol 138: 92-104

Released	2002-12-11
Method	ELECTRON MICROSCOPY 70 Å
Organisms	Gallus gallus Oryctolagus cuniculus
Macromolecule	SKELETAL MUSCLE ACTIN (protein) SKELETAL MUSCLE MYOSIN II (protein) SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN (protein) SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN (protein)

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1R1G \| pdb_00001r1g	Download File View File

Crystal Structure of the Scorpion Toxin BmBKTtx1

Szyk, A., Lu, W., Xu, C., Lubkowski, J.

(2004) J Struct Biol 145: 289-294

Released	2004-03-02
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Olivierus martensii
Macromolecule	Neurotoxin BmK37 (protein)

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1VK1 \| pdb_00001vk1	Download File View File

Conserved hypothetical protein from Pyrococcus furiosus Pfu-392566-001

Shah, A., Liu, Z.J., Tempel, W., Chen, L., Lee, D., Yang, H., Chang, J., Zhao, M., Ng, J., Rose, J., Brereton, P.S., Izumi, M., Jenney Jr., F.E., Poole II, F.L., Shah, C., Sugar, F.J., Adams, M.W.W., Richardson, D.C., Richardson, J.S., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)

(2007) BMC Struct Biol 7: 46-46

Released	2004-08-10
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Pyrococcus furiosus
Macromolecule	Conserved hypothetical protein (protein)
Unique Ligands	NA, PEG, PO4

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1XKP \| pdb_00001xkp	Download File View File

Crystal structure of the virulence factor YopN in complex with its heterodimeric chaperone SycN-YscB

Schubot, F.D., Jackson, M.W., Penrose, K.J., Cherry, S., Tropea, J.E., Plano, G.V., Waugh, D.S.

(2005) J Mol Biology 346: 1147-1161

Released	2005-03-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Yersinia pestis
Macromolecule	Chaperone protein sycN (protein) Chaperone protein yscB (protein) putative membrane-bound Yop targeting protein YopN (protein)

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1XL3 \| pdb_00001xl3	Download File View File

Complex structure of Y.pestis virulence Factors YopN and TyeA

Schubot, F.D., Jackson, M.W., Penrose, K.J., Cherry, S., Tropea, J.E., Plano, G.V., Waugh, D.S.

(2005) J Mol Biology 346: 1147-1161

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Yersinia pestis
Macromolecule	Secretion control protein (protein) protein type A (protein)

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1YYV \| pdb_00001yyv	Download File View File

Putative transcriptional regulator ytfH from Salmonella typhimurium

Osipiuk, J., Quartey, P., Lezondra, L., Moy, S., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	putative transcriptional regulator (protein)
Unique Ligands	CL

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1Z1Y \| pdb_00001z1y	Download File View File

Crystal structure of Methylated Pvs25, an ookinete protein from Plasmodium vivax

Saxena, A.K., Singh, K., Su, H.P., Klein, M.M., Stowers, A.W., Saul, A.J., Long, C.A., Garboczi, D.N.

(2006) Nat Struct Mol Biol 13: 90-91

Released	2005-12-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Plasmodium vivax
Macromolecule	ookinete surface protein Pvs25 (protein)
Unique Ligands	YB

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2CNX \| pdb_00002cnx	Download File View File

WDR5 and Histone H3 Lysine 4 dimethyl complex at 2.1 angstrom

Ruthenburg, A.J., Wang, W., Graybosch, D.M., Li, H., Allis, C.D., Patel, D.J., Verdine, G.L.

(2006) Nat Struct Mol Biol 13: 704

Released	2006-07-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	HISTONE H3 DIMETHYL-LYSINE 4 (protein) WD-REPEAT PROTEIN 5 (protein)