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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 33893388

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Homo sapiens (22)
	Enterovirus A71 (2)
	Coxsackievirus B3 (strain Nancy) (1)

Taxonomy

	Eukaryota (22)
	Riboviria (3)

Experimental Method

	X-RAY DIFFRACTION (20)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (22)

Refinement Resolution (Å)

	1.5 - 2.0 (9)
	2.0 - 2.5 (8)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)
	3.5 - 4.0 (2)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (11)
	2020 - 2024 (10)

Enzyme Classification Name

	Transferases (22)
	Hydrolases (19)

Symmetry Type

	Asymmetric (22)
	Cyclic (3)

AllSelected

1 to 22 of 22 Structures

Page 1 of 1

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Explore in 3D

3SMT \| pdb_00003smt	Download File View File

Crystal structure of human SET domain-containing protein3

Dong, A., Zeng, H., Walker, J.R., Loppnau, P., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Min, J., Wu, H., Structural Genomics Consortium (SGC)

To be published

Released	2011-07-20
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	ACT, ARS, PG4, SAM, UNX

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6ICT \| pdb_00006ict	Download File View File

Structure of SETD3 bound to SAH and methylated actin

Guo, Q., Liao, S., Xu, C., Structural Genomics Consortium (SGC)

(2019) Elife 8:

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.952 Å
Organisms	Homo sapiens
Macromolecule	Actin, cytoplasmic 1 (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	SAH

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6ICV \| pdb_00006icv	Download File View File

Structure of SETD3 bound to SAH and unmodified actin

Guo, Q., Liao, S., Xu, C., Structural Genomics Consortium (SGC)

(2019) Elife 8:

Released	2019-02-27
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	Actin, cytoplasmic 1 (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	SAH

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6JAT \| pdb_00006jat	Download File View File

Crystal structure of SETD3 bound to Actin peptide and SFG

Li, H., Zheng, Y.

To be published

Released	2020-01-29
Method	X-RAY DIFFRACTION 2.713 Å
Organisms	Homo sapiens
Macromolecule	Actin, gamma-enteric smooth muscle (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	EPE, SFG, SO4

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6MBJ \| pdb_00006mbj	Download File View File

SETD3, a Histidine Methyltransferase, in Complex with an Actin Peptide and SAH, P21 Crystal Form

Horton, J.R., Dai, S., Cheng, X.

(2019) Nature 565: 372-376

Released	2018-12-19
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Homo sapiens
Macromolecule	Actin Peptide (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	ACT, EDO, GOL, SAH

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6MBK \| pdb_00006mbk	Download File View File

SETD3, a Histidine Methyltransferase, in Complex with an Actin Peptide and SAH, First P212121 Crystal Form

Horton, J.R., Dai, S., Cheng, X.

(2019) Nature 565: 372-376

Released	2018-12-19
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	Actin peptide (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	EDO, GOL, SAH, SO4

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6MBL \| pdb_00006mbl	Download File View File

SETD3, a Histidine Methyltransferase, in Complex with an Actin Peptide and SAH, Second P212121 Crystal Form

Horton, J.R., Dai, S., Cheng, X.

(2019) Nature 565: 372-376

Released	2018-12-19
Method	X-RAY DIFFRACTION 2.197 Å
Organisms	Homo sapiens
Macromolecule	Actin Peptide (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	EDO, SAH

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6OX0 \| pdb_00006ox0	Download File View File

SETD3 in Complex with an Actin Peptide with Sinefungin Replacing SAH as Cofactor

Horton, J.R., Dai, S., Cheng, X.

(2019) Nat Commun 10: 3541-3541

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.755 Å
Organisms	Homo sapiens
Macromolecule	Actin Peptide (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	EDO, SFG

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6OX1 \| pdb_00006ox1	Download File View File

SETD3 in Complex with an Actin Peptide with Target Histidine Partially Methylated

Horton, J.R., Dai, S., Cheng, X.

(2019) Nat Commun 10: 3541-3541

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.949 Å
Organisms	Homo sapiens
Macromolecule	Actin, cytoplasmic 1 (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	EDO, GOL, SAH

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6OX2 \| pdb_00006ox2	Download File View File

SETD3in Complex with an Actin Peptide with the Target Histidine Fully Methylated

Horton, J.R., Dai, S., Cheng, X.

(2019) Nat Commun 10: 3541-3541

Released	2019-08-21
Method	X-RAY DIFFRACTION 2.089 Å
Organisms	Homo sapiens
Macromolecule	Actin Peptide (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	EDO, GOL, SAH

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6OX3 \| pdb_00006ox3	Download File View File

SETD3 in Complex with an Actin Peptide with His73 Replaced with Lysine

Horton, J.R., Dai, S., Cheng, X.

(2019) Nat Commun 10: 3541-3541

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.785 Å
Organisms	Homo sapiens
Macromolecule	Actin Peptide (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	ACT, EDO, GOL, PGE, SAH

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6OX4 \| pdb_00006ox4	Download File View File

A SETD3 Mutant (N255A) in Complex with an Actin Peptide

Horton, J.R., Dai, S., Cheng, X.

(2019) Nat Commun 10: 3541-3541

Released	2019-08-21
Method	X-RAY DIFFRACTION 2.294 Å
Organisms	Homo sapiens
Macromolecule	Actin Peptide (protein) Actin-histidine N-methyltransferase (protein)
Unique Ligands	ACT, EDO, GOL, SAH

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6OX5 \| pdb_00006ox5	Download File View File

A SETD3 Mutant (N255A) in Complex with an Actin Peptide with His73 Replaced with Lysine

Horton, J.R., Dai, S., Cheng, X.

(2019) Nat Commun 10: 3541-3541

Released	2019-08-21
Method	X-RAY DIFFRACTION 2.098 Å
Organisms	Homo sapiens
Macromolecule	Actin Peptide (protein) Actin-histidine N-methyltransferase (protein)
Unique Ligands	EDO, SAH

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6V62 \| pdb_00006v62	Download File View File

SETD3 double mutant (N255F/W273A) in Complex with an Actin Peptide with His73 Replaced with Lysine

Dai, S., Horton, J.R., Cheng, X.

(2020) J Biological Chem 295: 2582-2589

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Homo sapiens
Macromolecule	Actin, cytoplasmic 1 (protein) Actin-histidine N-methyltransferase (protein)
Unique Ligands	EDO, SAH

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6V63 \| pdb_00006v63	Download File View File

SETD3 WT in Complex with an Actin Peptide with His73 Replaced with Glutamine

Dai, S., Horton, J.R., Cheng, X.

(2020) J Biological Chem 295: 2582-2589

Released	2020-01-22
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	Actin, cytoplasmic 1 (protein) Actin-histidine N-methyltransferase (protein)
Unique Ligands	ACT, EDO, GOL, SAH

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6WK1 \| pdb_00006wk1	Download File View File

SETD3 in Complex with an Actin Peptide with His73 Replaced with Methionine

Dai, S., Horton, J.R., Cheng, X.

(2020) J Biological Chem 295: 10901-10910

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens
Macromolecule	Actin, cytoplasmic 2 (protein) Actin-histidine N-methyltransferase (protein)
Unique Ligands	ACT, EDO, GOL, SAH

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6WK2 \| pdb_00006wk2	Download File View File

SETD3 mutant (N255V) in Complex with an Actin Peptide with His73 Replaced with Methionine

Dai, S., Horton, J.R., Cheng, X.

(2020) J Biological Chem 295: 10901-10910

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	Actin, cytoplasmic 2 (protein) Actin-histidine N-methyltransferase (protein)
Unique Ligands	EDO, NA, SAM

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7LMS \| pdb_00007lms	Download File View File

Structure of human SetD3 methyl-transferase in complex with 2A protease from Coxsackievirus B3

Verba, K.A., Schulze-Gahmen, U.

(2022) Nat Commun 13: 5282-5282

Released	2022-08-10
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Coxsackievirus B3 (strain Nancy) Homo sapiens
Macromolecule	Actin-histidine N-methyltransferase (protein) Protease 2A (protein)
Unique Ligands	SAH, ZN

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7W28 \| pdb_00007w28	Download File View File

Crystal Structure of SETD3-SAH in complex with betaA-4PyrAla73 peptide

Li, H., Ma, H.

(2022) Protein Sci 31: e4305-e4305

Released	2022-10-05
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	Actin, cytoplasmic 1 (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	SAH, SO4

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7W29 \| pdb_00007w29	Download File View File

Crystal Structure of SETD3-SAH in complex with betaA-Orn73 peptide

Li, H., Ma, H.

(2022) Protein Sci 31: e4305-e4305

Released	2022-10-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Actin, cytoplasmic 1, N-terminally processed (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	SAH

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8X77 \| pdb_00008x77	Download File View File

Enterovirus proteinase with host factor

Gao, X., Cui, S.

(2024) Nat Commun 15: 4176-4176

Released	2024-05-29
Method	X-RAY DIFFRACTION 3.52 Å
Organisms	Enterovirus A71 Homo sapiens
Macromolecule	2A protein (protein) Actin-histidine N-methyltransferase (protein)
Unique Ligands	SAH, ZN

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8X8Q \| pdb_00008x8q	Download File View File

Structure of enterovirus protease in complex host factor

Gao, X., Cui, S.

(2024) Nat Commun 15: 4176-4176

Released	2024-05-29
Method	ELECTRON MICROSCOPY 3.14 Å
Organisms	Enterovirus A71 Homo sapiens
Macromolecule	2A protein (Fragment) (protein) Actin-histidine N-methyltransferase (protein)
Unique Ligands	ZN

1 to 22 of 22 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

3SMT | pdb_00003smt

6ICT | pdb_00006ict

6ICV | pdb_00006icv

6JAT | pdb_00006jat

6MBJ | pdb_00006mbj

6MBK | pdb_00006mbk

6MBL | pdb_00006mbl

6OX0 | pdb_00006ox0

6OX1 | pdb_00006ox1

6OX2 | pdb_00006ox2

6OX3 | pdb_00006ox3

6OX4 | pdb_00006ox4

6OX5 | pdb_00006ox5

6V62 | pdb_00006v62

6V63 | pdb_00006v63

6WK1 | pdb_00006wk1

6WK2 | pdb_00006wk2

7LMS | pdb_00007lms

7W28 | pdb_00007w28

7W29 | pdb_00007w29

8X77 | pdb_00008x77

8X8Q | pdb_00008x8q