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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "ANTIMICROBIAL PROTEIN"

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Search Summary

This query matches 894 Structures.

Refinements

Structure Determination Methodology

experimental (894)

Scientific Name of Source Organism

	Homo sapiens (140)
	Pseudomonas aeruginosa (78)
	Klebsiella pneumoniae (50)
	synthetic construct (44)
	Mycobacterium tuberculosis (23)
	Gallus gallus (20)
	Mus musculus (18)
	Bos taurus (17)
	Podisus maculiventris (15)
	Tachypleus tridentatus (14)

More...

Taxonomy

	Eukaryota (425)
	Bacteria (333)
	Eukaryota (eukaryotes) (53)
	other sequences (44)
	Duplodnaviria (14)
	Riboviria (6)
	Archaea (3)
	unclassified bacterial viruses (1)

Experimental Method

	SOLUTION NMR (447)
	X-RAY DIFFRACTION (392)
	ELECTRON MICROSCOPY (48)
	SOLID-STATE NMR (7)

Polymer Entity Type

	Protein (894)
	DNA (3)
	RNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (16)
	1.0 - 1.5 (150)
	1.5 - 2.0 (123)
	2.0 - 2.5 (62)
	2.5 - 3.0 (41)
	3.0 - 3.5 (24)
	3.5 - 4.0 (16)
	4.0 - 4.5 (2)
	> 4.5 (6)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (39)
	2005 - 2009 (124)
	2010 - 2014 (142)
	2015 - 2019 (208)
	2020 - 2024 (358)
	2025 - 2029 (22)

Enzyme Classification Name

	Hydrolases (130)
	Transferases (25)
	Oxidoreductases (4)
	Isomerases (1)

Membrane Protein Annotation

	OPM (131)
	PDBTM (6)
	mpstruc (5)
	MemProtMD (2)

Symmetry Type

	Asymmetric (778)
	Cyclic (109)
	Dihedral (39)
	Helical (3)
	Octahedral (1)

SCOP Classification

	Small proteins (47)
	Alpha and beta proteins (a+b) (35)
	All beta proteins (16)
	All alpha proteins (7)
	Artifacts (7)
	Peptides (23)
	Multi-domain proteins (alpha and beta) (13)
	Alpha and beta proteins (a/b) (6)
	Membrane and cell surface proteins and peptides (1)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 894 Structures

Page 1 of 36

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1C01 \| pdb_00001c01	Download File View File

SOLUTION STRUCTURE OF MIAMP1, A PLANT ANTIMICROBIAL PROTEIN

McManus, A.M., Nielsen, K.J., Marcus, J.P., Harrison, S.J., Green, J.L., Manners, J.M., Craik, D.J.

(1999) J Mol Biology 293: 629-638

Released	2000-07-19
Method	SOLUTION NMR
Organisms	Macadamia integrifolia
Macromolecule	ANTIMICROBIAL PEPTIDE 1 (protein)

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1D9J \| pdb_00001d9j	Download File View File

SOLUTION STRUCTURE OF CECROPIN A(1-8)-MAGAININ 2(1-12) HYBRID PEPTIDE

Oh, D., Kim, Y.

(1999) J Pept Res 53: 578-589

Released	1999-11-12
Method	SOLUTION NMR
Organisms	Hyalophora cecropia Xenopus laevis
Macromolecule	CECROPIN A-MAGAININ 2 HYBRID PEPTIDE (protein)

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1DQC \| pdb_00001dqc	Download File View File

SOLUTION STRUCTURE OF TACHYCITIN, AN ANTIMICROBIAL PROTEIN WITH CHITIN-BINDING FUNCTION

Suetake, T., Tsuda, S., Kawabata, S., Miura, K., Kawano, K.

(2000) J Biological Chem 275: 17929-17932

Released	2000-09-13
Method	SOLUTION NMR
Organisms	Tachypleus tridentatus
Macromolecule	TACHYCITIN (protein)

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1DUM \| pdb_00001dum	Download File View File

NMR STRUCTURE OF [F5Y, F16W] MAGAININ 2 BOUND TO PHOSPHOLIPID VESICLES

Takeda, A., Wakamatsu, K., Tachi, T., Matsuzaki, K.

(2001) Biopolymers 58: 437-446

Released	2001-06-27
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	MAGAININ 2 (protein)

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1EWS \| pdb_00001ews	Download File View File

THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE RABBIT KIDNEY DEFENSIN, RK-1

McManus, A.M., Dawson, N.F., Wade, J.D., Craik, D.J.

(2000) Biochemistry 39: 15757-15764

Released	2001-05-02
Method	SOLUTION NMR
Organisms	Oryctolagus cuniculus
Macromolecule	RK-1 DEFENSIN (protein)

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1F0D \| pdb_00001f0d	Download File View File

Cecropin A(1-8)-magainin 2(1-12) in dodecylphosphocholine micelles

Oh, D., Shin, S.Y., Lee, S., Kim, Y.

(2000) Biochemistry 39: 11855-11864

Released	2000-06-14
Method	SOLUTION NMR
Organisms	Hyalophora cecropia Xenopus laevis
Macromolecule	CECROPIN A-MAGAININ 2 HYBRID PEPTIDE (protein)

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1F0E \| pdb_00001f0e	Download File View File

Cecropin A(1-8)-magainin 2(1-12) modified gig to P in dodecylphosphocholine micelles

Oh, D., Shin, S.Y., Lee, S., Kim, Y.

(2000) Biochemistry 39: 11855-11864

Released	2000-06-14
Method	SOLUTION NMR
Organisms	Hyalophora cecropia Xenopus laevis
Macromolecule	CECROPIN A-MAGAININ 2 HYBRID PEPTIDE (protein)

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1F0G \| pdb_00001f0g	Download File View File

Cecropin A(1-8)-magainin 2(1-12) L2 in dodecylphosphocholine micelles

Oh, D., Shin, S.Y., Lee, S., Kim, Y.

(2000) Biochemistry 39: 11855-11864

Released	2000-06-14
Method	SOLUTION NMR
Organisms	Hyalophora cecropia Xenopus laevis
Macromolecule	CECROPIN A-MAGAININ 2 HYBRID PEPTIDE (protein)

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1F0H \| pdb_00001f0h	Download File View File

Cecropin A(1-8)-magainin 2(1-12) A2 in dodecylphosphocholine micelles

Oh, D., Shin, S.Y., Lee, S., Kim, Y.

(2000) Biochemistry 39: 11855-11864

Released	2000-06-14
Method	SOLUTION NMR
Organisms	Hyalophora cecropia Xenopus laevis
Macromolecule	CECROPIN A-MAGAININ 2 HYBRID PEPTIDE (protein)

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1FD3 \| pdb_00001fd3	Download File View File

HUMAN BETA-DEFENSIN 2

Hoover, D.M., Lubkowski, J.

(2000) J Biological Chem 275: 32911-32918

Released	2000-11-01
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	BETA-DEFENSIN 2 (protein)
Unique Ligands	SO4

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1FJN \| pdb_00001fjn	Download File View File

SOLUTION STRUCTURE AND ACTIVITY OF THE FOUR DISULFIDE BOND MEDITERRANEAN MUSSEL DEFENSIN MGD-1

Yang, Y.S.

(2000) Biochemistry 39: 14436-14447

Released	2000-12-20
Method	SOLUTION NMR
Organisms	Mytilus galloprovincialis
Macromolecule	DEFENSIN MGD-1 (protein)

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1FRY \| pdb_00001fry	Download File View File

THE SOLUTION STRUCTURE OF SHEEP MYELOID ANTIMICROBIAL PEPTIDE, RESIDUES 1-29 (SMAP29)

Tack, B.F., Sawai, M.V., Kearney, W.R., Robertson, A.D., Sherman, M.A., Wang, W., Hong, T., Boo, L.M., Wu, H., Waring, A.J., Lehrer, R.I.

(2002) Eur J Biochem 269: 1181-1189

Released	2002-03-08
Method	SOLUTION NMR
Organisms	Ovis aries
Macromolecule	MYELOID ANTIMICROBIAL PEPTIDE (protein)

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1FY1 \| pdb_00001fy1	Download File View File

[R23S,F25E]HBP, A MUTANT OF HUMAN HEPARIN BINDING PROTEIN (CAP37)

Kastrup, J.S., Linde, V., Pedersen, A.K., Stoffer, B., Iversen, L.F., Larsen, I.K., Rasmussen, P.B., Flodgaard, H.J., Bjorn, S.E.

(2001) Proteins 42: 442-451

Released	2001-09-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	HEPARIN-BINDING PROTEIN (protein)
Unique Ligands	EOH, NAG
Unique branched monosaccharides	NAG

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1FY3 \| pdb_00001fy3	Download File View File

[G175Q]HBP, A mutant of human heparin binding protein (CAP37)

Kastrup, J.S., Linde, V., Pedersen, A.K., Stoffer, B., Iversen, L.F., Larsen, I.K., Rasmussen, P.B., Flodgaard, H.J., Bjorn, S.E.

(2001) Proteins 42: 442-451

Released	2001-09-28
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens
Macromolecule	HEPARIN-BINDING PROTEIN (protein)
Unique Ligands	CL, EOH, NAG
Unique branched monosaccharides	NAG

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1G89 \| pdb_00001g89	Download File View File

STRUCTURE OF THE BOVINE ANTIMICROBIAL PEPTIDE INDOLICIDIN BOUND TO DODECYLPHOSPHOCHOLINE MICELLES

Rozek, A., Friedrich, C.L., Hancock, R.E.

(2000) Biochemistry 39: 15765-15774

Released	2000-11-29
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	INDOLICIDIN (protein)

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1G8C \| pdb_00001g8c	Download File View File

STRUCTURE OF THE BOVINE ANTIMICROBIAL PEPTIDE INDOLICIDIN BOUND TO SODIUM DODECYL SULFATE MICELLES

Rozek, A., Friedrich, C.L., Hancock, R.E.

(2000) Biochemistry 39: 15765-15774

Released	2000-11-29
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	INDOLICIDIN (protein)

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1GQM \| pdb_00001gqm	Download File View File

The structure of S100A12 in a hexameric form and its proposed role in receptor signalling

Moroz, O.V., Antson, A.A., Dodson, E.G., Burrel, H.J., Grist, S.J., Lloyd, R.M., Maitland, N.J., Dodson, G.G., Wilson, K.S., Lukanidin, E., Bronstein, I.B.

(2002) Acta Crystallogr D Biol Crystallogr 58: 407

Released	2002-02-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	CALGRANULIN C (protein)
Unique Ligands	CA

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1HVZ \| pdb_00001hvz	Download File View File

RTD-1, A CYCLIC ANTIMICROBIAL DEFENSIN FROM RHESUS MACAQUE LEUKOCYTES

Craik, D.J., Trabi, M., Schirra, H.J.

(2001) Biochemistry 40: 4211-4221

Released	2001-05-30
Method	SOLUTION NMR
Macromolecule	THETA DEFENSIN 1 (protein)

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1I2V \| pdb_00001i2v	Download File View File

NMR SOLUTION STRUCTURES OF AN ANTIFUNGAL AND ANTIBACTERIAL MUTANT OF HELIOMICIN

Lamberty, M., Caille, A., Landon, C., Tassin-Moindrot, S., Hetru, C., Bulet, P., Vovelle, F.

(2001) Biochemistry 40: 11995-12003

Released	2002-02-12
Method	SOLUTION NMR
Organisms	Heliothis virescens
Macromolecule	DEFENSIN HELIOMICIN (protein)

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1KLL \| pdb_00001kll	Download File View File

Molecular basis of mitomycin C resictance in streptomyces: Crystal structures of the MRD protein with and without a drug derivative

Martin, T.W., Dauter, Z., Devedjiev, Y., Sheffield, P., Jelen, F., He, M., Sherman, D., Otlewski, J., Derewenda, Z.S., Derewenda, U.

(2002) Structure 10: 933-942

Released	2002-07-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces lavendulae
Macromolecule	mitomycin-binding protein (protein)
Unique Ligands	MC

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1KMZ \| pdb_00001kmz	Download File View File

MOLECULAR BASIS OF MITOMYCIN C RESICTANCE IN STREPTOMYCES: CRYSTAL STRUCTURES OF THE MRD PROTEIN WITH AND WITHOUT A DRUG DERIVATIVE

Martin, T.W., Dauter, Z., Devedjiev, Y., Sheffield, P., Jelen, F., He, M., Sherman, D., Otlewski, J., Derewenda, Z.S., Derewenda, U.

(2002) Structure 10: 933-942

Released	2002-07-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces lavendulae
Macromolecule	mitomycin-binding protein (protein)

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1KWI \| pdb_00001kwi	Download File View File

Crystal Structure Analysis of the Cathelicidin Motif of Protegrins

Sanchez, J.F., Hoh, F., Strub, M.P., Aumelas, A., Dumas, C.

(2002) Structure 10: 1363-1370

Released	2002-10-09
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Sus scrofa
Macromolecule	Protegrin-3 Precursor (protein)

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1L9L \| pdb_00001l9l	Download File View File

GRANULYSIN FROM HUMAN CYTOLYTIC T LYMPHOCYTES

Anderson, D.H., Sawaya, M.R., Cascio, D., Ernst, W., Krensky, A., Modlin, R., Eisenberg, D.

(2002) J Mol Biology 325: 355-365

Released	2002-11-06
Method	X-RAY DIFFRACTION 0.92 Å
Organisms	Homo sapiens
Macromolecule	Granulysin (protein)
Unique Ligands	EOH, MPO, SO4

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1LXE \| pdb_00001lxe	Download File View File

CRYSTAL STRUCTURE OF THE CATHELICIDIN MOTIF OF PROTEGRINS

Sanchez, J.F., Hoh, F., Strub, M.P., Aumelas, A., Dumas, C.

(2002) Structure 10: 1363-1370

Released	2002-10-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Sus scrofa
Macromolecule	protegrin-3 precursor (protein)

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1M4E \| pdb_00001m4e	Download File View File

Solution Structure of Hepcidin-20

Hunter, H.N., Fulton, D.B., Ganz, T., Vogel, H.J.

(2002) J Biological Chem 277: 37597-37603

Released	2002-11-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Hepcidin (protein)

1 to 25 of 894 Structures

Page 1 of 36

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1C01 | pdb_00001c01

1D9J | pdb_00001d9j

1DQC | pdb_00001dqc

1DUM | pdb_00001dum

1EWS | pdb_00001ews

1F0D | pdb_00001f0d

1F0E | pdb_00001f0e

1F0G | pdb_00001f0g

1F0H | pdb_00001f0h

1FD3 | pdb_00001fd3

1FJN | pdb_00001fjn

1FRY | pdb_00001fry

1FY1 | pdb_00001fy1

1FY3 | pdb_00001fy3

1G89 | pdb_00001g89

1G8C | pdb_00001g8c

1GQM | pdb_00001gqm

1HVZ | pdb_00001hvz

1I2V | pdb_00001i2v

1KLL | pdb_00001kll

1KMZ | pdb_00001kmz

1KWI | pdb_00001kwi

1L9L | pdb_00001l9l

1LXE | pdb_00001lxe

1M4E | pdb_00001m4e