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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "CELL CYCLE/DNA"

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Saccharomyces cerevisiae (17)
	synthetic construct (9)
	Homo sapiens (7)
	Escherichia coli K-12 (1)
	Gallus gallus (1)
	Punavirus P1 (1)
	Vibrio cholerae O1 biovar El Tor str. N16961 (1)
	unidentified cloning vector (1)

Taxonomy

	Eukaryota (24)
	other sequences (9)
	Bacteria (2)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (16)
	ELECTRON MICROSCOPY (10)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (27)
	DNA (26)

Refinement Resolution (Å)

	1.5 - 2.0 (11)
	2.0 - 2.5 (1)
	2.5 - 3.0 (7)
	3.0 - 3.5 (3)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (11)
	2010 - 2014 (1)
	2015 - 2019 (3)
	2020 - 2024 (11)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Asymmetric (23)
	Cyclic (5)

SCOP Classification

All beta proteins (11)

AllSelected

1 to 25 of 27 Structures

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1S40 \| pdb_00001s40	Download File View File

SOLUTION STRUCTURE OF THE CDC13 DNA-BINDING DOMAIN COMPLEXED WITH A SINGLE-STRANDED TELOMERIC DNA 11-MER

Mitton-Fry, R.M., Anderson, E.M., Theobald, D.L., Glustrom, L.W., Wuttke, D.S.

(2004) J Mol Biology 338: 241-255

Released	2004-05-04
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Cell division control protein 13 (protein) 5'-D(GPTPGPTPGPGPGPTPGPTP*G)-3' (nucleic acid)

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2ETW \| pdb_00002etw	Download File View File

Principles of protein-DNA recognition revealed in the structural analysis of Ndt80-MSE DNA complexes

Lamoureux, J.S., Glover, J.N.

(2006) Structure 14: 555-565

Released	2006-03-21
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	NDT80 protein (protein) 5'-D(APGPTPTPTPTPTPGPTPGPTPGPGPC)-3' (nucleic acid) 5'-D(TPGPCPCPAPCPAPCPAPAPAPAPAPC)-3' (nucleic acid)

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2EUV \| pdb_00002euv	Download File View File

Principles of protein-DNA recognition revealed in the structural analysis of Ndt80-MSE DNA complexes

Lamoureux, J.S., Glover, J.N.

(2006) Structure 14: 555-565

Released	2006-03-21
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	NDT80 protein (protein) 5'-D(APGPTPAPTPTPTPGPTPGPTPTPGPC)-3' (nucleic acid) 5'-D(TPGPCPAPAPCPAPCPAPAPAPTPAPC)-3' (nucleic acid)

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2EUW \| pdb_00002euw	Download File View File

Structure of a Ndt80-DNA complex (MSE mutant mA4T)

Lamoureux, J.S., Glover, J.N.

(2006) Structure 14: 555-565

Released	2006-03-21
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	NDT80 protein (protein) 5'-D(APGPTPTPTPTPTPGPAPGPTPCPGPC)-3' (nucleic acid) 5'-D(TPGPCPGPAPCPTPCPAPAPAPAPAPC)-3' (nucleic acid)

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2EUX \| pdb_00002eux	Download File View File

Structure of a Ndt80-DNA complex (MSE VARIANT vA4G)

Lamoureux, J.S., Glover, J.N.

(2006) Structure 14: 555-565

Released	2006-03-21
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	NDT80 protein (protein) 5'-D(APGPTPTPTPTPTPGPCPGPTPCPGPC)-3' (nucleic acid) 5'-D(TPGPCPGPAPCPGPCPAPAPAPAPAPC)-3' (nucleic acid)

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2EUZ \| pdb_00002euz	Download File View File

Structure of a Ndt80-DNA complex (MSE mutant mC5T)

Lamoureux, J.S., Glover, J.N.

(2006) Structure 14: 555-565

Released	2006-03-21
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	NDT80 protein (protein) 5'-D(APGPTPTPTPTPTPAPTPGPTPCPGPC)-3' (nucleic acid) 5'-D(TPGPCPGPAPCPAPTPAPAPAPAPAPC)-3' (nucleic acid)

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2EVF \| pdb_00002evf	Download File View File

Structure of a Ndt80-DNA complex (MSE mutant mA6T)

Lamoureux, J.S., Glover, J.N.

(2006) Structure 14: 555-565

Released	2006-03-21
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	NDT80 protein (protein) 5'-D(APGPTPTPTPTPAPGPTPGPTPCPGPC)-3' (nucleic acid) 5'-D(TPGPCPGPAPCPAPCPTPAPAPAPAPC)-3' (nucleic acid)

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2EVG \| pdb_00002evg	Download File View File

Structure of a Ndt80-DNA complex (MSE mutant mA7T)

Lamoureux, J.S., Glover, J.N.

(2006) Structure 14: 555-565

Released	2006-03-21
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	NDT80 protein (protein) 5'-D(APGPTPTPTPAPTPGPTPGPTPCPGPC)-3' (nucleic acid) 5'-D(TPGPCPGPAPCPAPCPAPTPAPAPAPC)-3' (nucleic acid)

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2EVH \| pdb_00002evh	Download File View File

Structure of a Ndt80-DNA complex (MSE mutant mA7G)

Lamoureux, J.S., Glover, J.N.

(2006) Structure 14: 555-565

Released	2006-03-21
Method	X-RAY DIFFRACTION 1.989 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	NDT80 protein (protein) 5'-D(APGPTPTPTPCPTPGPTPGPTPCPGPC)-3' (nucleic acid) 5'-D(TPGPCPGPAPCPAPCPAPGPAPAPAPC)-3' (nucleic acid)

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2EVI \| pdb_00002evi	Download File View File

Structure of a Ndt80-DNA complex (MSE mutant mA8T)

Lamoureux, J.S., Glover, J.N.

(2006) Structure 14: 555-565

Released	2006-03-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	NDT80 protein (protein) 5'-D(APGPTPTPAPTPTPGPTPGPTPCPGPC)-3' (nucleic acid) 5'-D(TPGPCPGPAPCPAPCPAPAPTPAPAPC)-3' (nucleic acid)

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2EVJ \| pdb_00002evj	Download File View File

Structure of an Ndt80-DNA complex (MSE mutant mA9C)

Lamoureux, J.S., Glover, J.N.

(2006) Structure 14: 555-565

Released	2006-03-21
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	NDT80 protein (protein) 5'-D(APGPTPGPTPTPTPGPTPGPTPCPGPC)-3' (nucleic acid) 5'-D(TPGPCPGPAPCPAPCPAPAPAPCPAPC)-3' (nucleic acid)

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2NTZ \| pdb_00002ntz	Download File View File

Structure of a ParB-DNA complex reveals a double B-box interaction

Schumacher, M.A., Mansoor, A., Funnell, B.E.

(2007) J Biological Chem 282: 10456-10464

Released	2007-02-20
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Punavirus P1
Macromolecule	ParB (protein) 5'-D(CPGPTPGPAPAPAPTPCPGPCPCPAPCPGPA)-3' (nucleic acid) 5'-D(TPCPGPTPGPGPCPGPAPTPTPTPCPAPCPG)-3' (nucleic acid)

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3Q06 \| pdb_00003q06	Download File View File

An induced fit mechanism regulates p53 DNA binding kinetics to confer sequence specificity

Petty, T.J., Halazonetis, T.D.

(2011) EMBO J 30: 2167-2176

Released	2011-05-11
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Cellular tumor antigen p53 (protein) DNA (26-MER) (nucleic acid)
Unique Ligands	ZN

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5HAW \| pdb_00005haw	Download File View File

structures of the NO factor SlmA bound to DNA and the cytoskeletal cell division protein FtsZ

Schumacher, M.A., Zeng, W.

(2016) Proc Natl Acad Sci U S A 113: 4988-4993

Released	2016-04-13
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Vibrio cholerae O1 biovar El Tor str. N16961 synthetic construct
Macromolecule	FtsZ CTT (protein) Nucleoid occlusion factor SlmA (protein) DNA (5'-D(GPTPGPAPGPTPAPCPTPCPAPC)-3') (nucleic acid)

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5HBU \| pdb_00005hbu	Download File View File

Structure of the E. coli nucleoid occlusion protein SlmA bound to DNA and the C-terminal tail of the cytoskeletal cell division protein FtsZ

Schumacher, M.A., Zeng, W.

(2016) Proc Natl Acad Sci U S A 113: 4988-4993

Released	2016-04-13
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	FtsZ CTT peptide (protein) Nucleoid occlusion factor SlmA (protein) DNA (5'-D(GPTPGPAPGPTPAPCPTPCPAPC)-3') (nucleic acid)

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6WG3 \| pdb_00006wg3	Download File View File

Cryo-EM structure of human Cohesin-NIPBL-DNA complex

Shi, Z.B., Gao, H., Bai, X.C., Yu, H.

(2020) Science 368: 1454-1459

Released	2020-05-20
Method	ELECTRON MICROSCOPY 5.3 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2
Unique Ligands	ANP

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6WG6 \| pdb_00006wg6	Download File View File

Crystal structure of human SMC1-SMC3 hinge domain heterodimer in north-open conformation

Shi, Z.B., Yu, H.

(2020) Science 368: 1454-1459

Released	2020-05-20
Method	X-RAY DIFFRACTION 3.54 Å
Organisms	Homo sapiens
Macromolecule	Structural maintenance of chromosomes protein (protein) Structural maintenance of chromosomes protein 3 (protein) poly(dT) (nucleic acid)

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6WGE \| pdb_00006wge	Download File View File

Cryo-EM structure of human Cohesin-NIPBL-DNA complex without STAG1

Shi, Z.B., Gao, H., Bai, X.C., Yu, H.

(2020) Science 368: 1454-1459

Released	2020-05-20
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	ANP, MG

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7BXT \| pdb_00007bxt	Download File View File

The cryo-EM structure of CENP-A nucleosome in complex with CENP-C peptide and CENP-N N-terminal domain

Ariyoshi, M., Makino, F., Fukagawa, T.

(2021) EMBO J 40: e105671-e105671

Released	2021-02-10
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Gallus gallus Homo sapiens synthetic construct unidentified cloning vector
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2

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7W1Y \| pdb_00007w1y	Download File View File

Human MCM double hexamer bound to natural DNA duplex (polyAT/polyTA)

Li, J., Dong, J., Dang, S., Zhai, Y.

(2023) Cell 186: 98-111.e21

Released	2023-02-08
Method	ELECTRON MICROSCOPY 2.59 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ADP, ATP, MG, ZN

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8FS3 \| pdb_00008fs3	Download File View File

Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 1 (open 9-1-1 and shoulder bound DNA only)

Zheng, F., Georgescu, R., Yao, Y.N., O'Donnell, M.E., Li, H.

(2023) bioRxiv

Released	2023-06-14
Method	ELECTRON MICROSCOPY 2.93 Å
Organisms	Saccharomyces cerevisiae synthetic construct
Macromolecule	Unique protein chains: 8 Unique nucleic acid chains: 2
Unique Ligands	ADP, AGS, MG

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8FS4 \| pdb_00008fs4	Download File View File

Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 2 (open 9-1-1 ring and flexibly bound chamber DNA)

Zheng, F., Georgescu, R., Yao, Y.N., O'Donnell, M.E., Li, H.

(2023) bioRxiv

Released	2023-06-14
Method	ELECTRON MICROSCOPY 2.94 Å
Organisms	Saccharomyces cerevisiae synthetic construct
Macromolecule	Unique protein chains: 8 Unique nucleic acid chains: 3
Unique Ligands	ADP, AGS, MG

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8FS5 \| pdb_00008fs5	Download File View File

Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 3 (open 9-1-1 and stably bound chamber DNA)

Zheng, F., Georgescu, R., Yao, Y.N., O'Donnell, M.E., Li, H.

(2023) bioRxiv

Released	2023-06-14
Method	ELECTRON MICROSCOPY 2.76 Å
Organisms	Saccharomyces cerevisiae synthetic construct
Macromolecule	Unique protein chains: 8 Unique nucleic acid chains: 3
Unique Ligands	ADP, AGS, MG

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8FS6 \| pdb_00008fs6	Download File View File

Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 4 (partially closed 9-1-1 and stably bound chamber DNA)

Zheng, F., Georgescu, R., Yao, Y.N., O'Donnell, M.E., Li, H.

(2023) bioRxiv

Released	2023-06-14
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Saccharomyces cerevisiae synthetic construct
Macromolecule	Unique protein chains: 8 Unique nucleic acid chains: 3
Unique Ligands	ADP, AGS, MG

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8FS7 \| pdb_00008fs7	Download File View File

Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 5 (closed 9-1-1 and stably bound chamber DNA)

Zheng, F., Georgescu, R., Yao, Y.N., O'Donnell, M.E., Li, H.

(2023) bioRxiv

Released	2023-06-14
Method	ELECTRON MICROSCOPY 2.85 Å
Organisms	Saccharomyces cerevisiae synthetic construct
Macromolecule	Unique protein chains: 8 Unique nucleic acid chains: 3
Unique Ligands	ADP, AGS, MG

1 to 25 of 27 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1S40 | pdb_00001s40

2ETW | pdb_00002etw

2EUV | pdb_00002euv

2EUW | pdb_00002euw

2EUX | pdb_00002eux

2EUZ | pdb_00002euz

2EVF | pdb_00002evf

2EVG | pdb_00002evg

2EVH | pdb_00002evh

2EVI | pdb_00002evi

2EVJ | pdb_00002evj

2NTZ | pdb_00002ntz

3Q06 | pdb_00003q06

5HAW | pdb_00005haw

5HBU | pdb_00005hbu

6WG3 | pdb_00006wg3

6WG6 | pdb_00006wg6

6WGE | pdb_00006wge

7BXT | pdb_00007bxt

7W1Y | pdb_00007w1y

8FS3 | pdb_00008fs3

8FS4 | pdb_00008fs4

8FS5 | pdb_00008fs5

8FS6 | pdb_00008fs6

8FS7 | pdb_00008fs7