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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "DNA BINDING PROTEIN, GENE REGULATION"

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Search Summary

This query matches 54 Structures.

Refinements

Structure Determination Methodology

experimental (54)

Scientific Name of Source Organism

	Escherichia coli (32)
	Escherichia coli K-12 (9)
	Pseudomonas aeruginosa PAO1 (4)
	Klebsiella quasipneumoniae (2)
	Streptomyces coelicolor (2)
	synthetic construct (2)
	Bacillus subtilis (1)
	Escherichia coli BL21(DE3) (1)
	Escherichia coli DH1 (1)
	Klebsiella pneumoniae (1)

More...

Taxonomy

	Bacteria (52)
	other sequences (2)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (40)
	SOLUTION NMR (9)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

	Protein (54)
	DNA (2)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (20)
	2.0 - 2.5 (14)
	2.5 - 3.0 (3)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (11)
	2005 - 2009 (13)
	2010 - 2014 (9)
	2015 - 2019 (9)
	2020 - 2024 (8)

Enzyme Classification Name

	Hydrolases (25)
	Lyases (3)

Membrane Protein Annotation

	PDBTM (6)
	MemProtMD (5)
	OPM (5)
	mpstruc (5)

Symmetry Type

	Asymmetric (46)
	Cyclic (9)

SCOP Classification

	Alpha and beta proteins (a+b) (24)
	All alpha proteins (22)
	Artifacts (7)
	All beta proteins (6)
	Alpha and beta proteins (a/b) (3)

AllSelected

1 to 25 of 54 Structures

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1AYI \| pdb_00001ayi	Download File View File

COLICIN E7 IMMUNITY PROTEIN IM7

Dennis, C.A., Pauptit, R.A., Wallis, R., James, R., Moore, G.R., Kleanthous, C.

(1998) Biochem J 333 ( Pt 1): 183-191

Released	1998-01-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E IMMUNITY PROTEIN 7 (protein)

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1BXI \| pdb_00001bxi	Download File View File

CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI COLICIN E9 DNASE DOMAIN WITH ITS COGNATE IMMUNITY PROTEIN IM9

Kuhlmann, U.C., Kleanthous, C., James, R., Moore, G.R., Hemmings, A.M.

(1998) Thesis

Released	1999-10-04
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (COLICIN E9 IMMUNITY PROTEIN) (protein) PROTEIN (COLICIN E9) (protein)
Unique Ligands	NI, PO4

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1E0H \| pdb_00001e0h	Download File View File

Inhibitor Protein Im9 bound to its partner E9 DNase

Boetzel, R., Czisch, M., Kaptein, R., Hemmings, A.M., James, R., Kleanthous, C., Moore, G.R.

(2000) Protein Sci 9: 1709-1718

Released	2000-10-30
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	IMMUNITY PROTEIN FOR COLICIN E9 (protein)

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1E44 \| pdb_00001e44	Download File View File

ribonuclease domain of colicin E3 in complex with its immunity protein

Carr, S., Walker, D., James, R., Kleanthous, C., Hemmings, A.M.

(2000) Structure 8: 949

Released	2001-06-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E3 (protein) IMMUNITY PROTEIN (protein)
Unique Ligands	EDO

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1EMV \| pdb_00001emv	Download File View File

CRYSTAL STRUCTURE OF COLICIN E9 DNASE DOMAIN WITH ITS COGNATE IMMUNITY PROTEIN IM9 (1.7 ANGSTROMS)

Kuhlmann, U.C., Pommer, A.J., Moore, G.M., James, R., Kleanthous, C.

(2000) J Mol Biology 301: 1163-1178

Released	2000-09-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein) IMMUNITY PROTEIN IM9 (protein)
Unique Ligands	PO4

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1FR2 \| pdb_00001fr2	Download File View File

CRYSTAL STRUCTURE OF THE E9 DNASE DOMAIN WITH A MUTANT IMMUNITY PROTEIN IM9(E41A)

Kuhlmann, U.C., Pommer, A.J., Moore, G.M., James, R., Kleanthous, C., Hemmings, A.M.

To be published

Released	2003-06-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein) COLICIN E9 IMMUNITY PROTEIN (protein)
Unique Ligands	PO4, ZN

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1FSJ \| pdb_00001fsj	Download File View File

CRYSTAL STRUCTURE OF THE E9 DNASE DOMAIN

Kuhlmann, U.C., Pommer, A.J., Moore, G.R., James, R., Kleanthous, C., Hemmings, A.M.

To be published

Released	2003-06-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein)
Unique Ligands	PO4, ZN

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1GXG \| pdb_00001gxg	Download File View File

Non-cognate protein-protein interactions: the NMR structure of the colicin E8 inhibitor protein Im8 and its interaction with the DNase domain of colicin E9

Le Duff, C.S., Videler, H., Boetzel, R., Czisch, M., James, R., Kleanthous, C., Moore, G.R.

To be published

Released	2002-05-01
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	COLICIN E8 IMMUNITY PROTEIN (protein)

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1GXH \| pdb_00001gxh	Download File View File

Colicin E8 DNAse immunity protein: Im8

Leduff, C.S., Videler, H., Boetzel, R., Czisch, M., James, R., Kleanthous, C., Moore, G.R.

To be published

Released	2002-05-01
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	COLICIN E8 IMMUNITY PROTEIN (protein)

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1H3L \| pdb_00001h3l	Download File View File

N-terminal fragment of SigR from Streptomyces coelicolor

Li, W., Stevenson, C.E.M., Burton, N., Jakimowicz, P., Paget, M.S.B., Buttner, M.J., Lawson, D.M., Kleanthous, C.

(2002) J Mol Biology 323: 225

Released	2002-10-03
Method	X-RAY DIFFRACTION 2.375 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	RNA POLYMERASE SIGMA FACTOR (protein)

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1IMP \| pdb_00001imp	Download File View File

COLICIN E9 IMMUNITY PROTEIN IM9, NMR, 21 STRUCTURES

Osborne, M.J., Breeze, A.L., Lian, L.-Y., Reilly, A., James, R., Kleanthous, C., Moore, G.R.

(1996) Biochemistry 35: 9505-9512

Released	1997-09-17
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	IM9 (protein)

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1IMQ \| pdb_00001imq	Download File View File

COLICIN E9 IMMUNITY PROTEIN IM9, NMR, MINIMIZED AVERAGE STRUCTURE

Osborne, M.J., Breeze, A.L., Lian, L.Y., Reilly, A., James, R., Kleanthous, C., Moore, G.R.

(1996) Biochemistry 35: 9505-9512

Released	1997-07-07
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	IM9 (protein)

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1T3O \| pdb_00001t3o	Download File View File

Solution structure of CsrA, a bacterial carbon storage regulatory protein

Koharudin, L.M.I., Georgiou, T., Kleanthous, C., Geoffrey, R., Kaptein, R., Boelens, R.

To be published

Released	2005-10-18
Method	SOLUTION NMR
Organisms	Bacillus subtilis
Macromolecule	Carbon storage regulator (protein)

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1V13 \| pdb_00001v13	Download File View File

CRYSTAL STRUCTURE OF THE MUTANT HIS103ALA OF THE COLICIN E9 DNASE DOMAIN IN COMPLEX WITH ZN+2 (2.0 ANGSTROMS)

Mate, M.J., Kleanthous, C.

(2004) J Biological Chem 279: 34763

Released	2004-06-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein)
Unique Ligands	ZN

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1V14 \| pdb_00001v14	Download File View File

Crystal Structure of the Colicin E9, mutant His103Ala, in complex with Mg+2 and dsDNA (resolution 2.9A)

Mate, M.J., Kleanthous, C.

(2004) J Biological Chem 279: 34763

Released	2004-06-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein) 5'-D(GPCPGPAPTPCPGPCP)-3' (nucleic acid)
Unique Ligands	MG

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1V15 \| pdb_00001v15	Download File View File

CRYSTAL STRUCTURE OF THE COLICIN E9, MUTANT HIS103ALA, IN COMPLEX WITH ZN+2 AND DSDNA (RESOLUTION 2.4A)

Mate, M.J., Kleanthous, C.

(2004) J Biological Chem 279: 34763

Released	2004-06-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein) 5'-D(GPCPGPAPTPCPGPCP)-3' (nucleic acid)
Unique Ligands	ZN

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2GZE \| pdb_00002gze	Download File View File

Crystal structure of the E9 DNase domain with a mutant immunity protein IM9 (Y55A)

Santi, P.S., Kolade, O.O., Kuhlmann, U.C., Kleanthous, C., Hemmings, A.M.

To be published

Released	2008-03-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12
Macromolecule	Colicin-E9 (protein) Colicin-E9 immunity protein (protein)
Unique Ligands	PO4, ZN

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2GZF \| pdb_00002gzf	Download File View File

Crystal structure of the E9 DNase domain with a mutant immunity protein IM9 (Y54F)

Santi, P.S., Kolade, O.O., Kuhlmann, U.C., Kleanthous, C., Hemmings, A.M.

To be published

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli K-12
Macromolecule	Colicin-E9 (protein) Colicin-E9 immunity protein (protein)
Unique Ligands	PO4, ZN

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2GZG \| pdb_00002gzg	Download File View File

Crystal Structure of the E9 DNase Domain with a Mutant Immunity Protein IM9 (Y55F)

Santi, P.S., Kolade, O.O., Kuhlmann, U.C., Kleanthous, C., Hemmings, A.M.

To be published

Released	2008-03-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Colicin-E9 (protein) Colicin-E9 immunity protein (protein)
Unique Ligands	PO4, ZN

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2GZI \| pdb_00002gzi	Download File View File

Crystal Structure of the E9 DNase Domain with a Mutant Immunity Protein IM9 (V34A)

Santi, P.S., Kolade, O.O., Kuhlmann, U.C., Kleanthous, C., Hemmings, A.M.

To be published

Released	2008-03-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Colicin-E9 (protein) Colicin-E9 immunity protein (protein)
Unique Ligands	PO4, ZN

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2GZJ \| pdb_00002gzj	Download File View File

Crystal Structure of the E9 DNase Domain with a Mutant Immunity Protein IM9 (D51A)

Santi, P.S., Kolade, O.O., Kuhlmann, U.C., Kleanthous, C., Hemmings, A.M.

To be published

Released	2008-03-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli K-12
Macromolecule	Colicin-E9 (protein) Colicin-E9 immunity protein (protein)
Unique Ligands	PO4, ZN

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2HQS \| pdb_00002hqs	Download File View File

Crystal structure of TolB/Pal complex

Grishkovskaya, I., Bonsor, D.A., Kleanthous, C., Dodson, E.J.

(2007) J Am Chem Soc 129: 4800-4807

Released	2007-04-03
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	Peptidoglycan-associated lipoprotein (protein) Protein tolB (protein)
Unique Ligands	ACT, GOL, SO4

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2IVZ \| pdb_00002ivz	Download File View File

Structure of TolB in complex with a peptide of the colicin E9 T- domain

Loftus, S.R., Walker, D., Mate, M.J., Bonsor, D.A., James, R., Moore, G.R., Kleanthous, C.

(2006) Proc Natl Acad Sci U S A 103: 12353

Released	2006-08-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	COLICIN-E9 (protein) PROTEIN TOLB (protein)
Unique Ligands	CA

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2VLN \| pdb_00002vln	Download File View File

N75A mutant of E9 DNase domain in complex with Im9

Keeble, A.H., Joachimiak, L.A., Mate, M.J., Meenan, N., Kirkpatrick, N., Baker, D., Kleanthous, C.

(2008) J Mol Biology 379: 745

Released	2008-05-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein) COLICIN-E9 IMMUNITY PROTEIN (protein)
Unique Ligands	MLA

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2VLO \| pdb_00002vlo	Download File View File

K97A mutant of E9 DNase domain in complex with Im9

Keeble, A.H., Joachimiak, L.A., Mate, M.J., Meenan, N., Kirkpatrick, N., Baker, D., Kleanthous, C.

(2008) J Mol Biology 379: 745

Released	2008-05-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein) COLICIN-E9 IMMUNITY PROTEIN (protein)
Unique Ligands	SO4

1 to 25 of 54 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AYI | pdb_00001ayi

1BXI | pdb_00001bxi

1E0H | pdb_00001e0h

1E44 | pdb_00001e44

1EMV | pdb_00001emv

1FR2 | pdb_00001fr2

1FSJ | pdb_00001fsj

1GXG | pdb_00001gxg

1GXH | pdb_00001gxh

1H3L | pdb_00001h3l

1IMP | pdb_00001imp

1IMQ | pdb_00001imq

1T3O | pdb_00001t3o

1V13 | pdb_00001v13

1V14 | pdb_00001v14

1V15 | pdb_00001v15

2GZE | pdb_00002gze

2GZF | pdb_00002gzf

2GZG | pdb_00002gzg

2GZI | pdb_00002gzi

2GZJ | pdb_00002gzj

2HQS | pdb_00002hqs

2IVZ | pdb_00002ivz

2VLN | pdb_00002vln

2VLO | pdb_00002vlo