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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "HYDROLASE/SIGNALING PROTEIN"

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Search Summary

This query matches 48 Structures.

Refinements

Structure Determination Methodology

experimental (48)

Scientific Name of Source Organism

	Homo sapiens (30)
	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (5)
	Bdellovibrio bacteriovorus HD100 (4)
	Mus musculus (4)
	Rattus norvegicus (3)
	Caenorhabditis elegans (2)
	Clostridium botulinum (2)
	Thermus thermophilus HB8 (2)
	Trichinella spiralis (2)
	Arabidopsis thaliana (1)

More...

Taxonomy

	Eukaryota (36)
	Bacteria (16)
	Eukaryota (eukaryotes) (1)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (44)
	SOLUTION NMR (3)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (48)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (12)
	2.0 - 2.5 (13)
	2.5 - 3.0 (13)
	3.0 - 3.5 (6)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (11)
	2010 - 2014 (24)
	2015 - 2019 (4)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (32)
	Transferases (5)
	Ligases (4)
	Isomerases (1)

Symmetry Type

	Asymmetric (42)
	Cyclic (9)

SCOP Classification

	Alpha and beta proteins (a+b) (16)
	All beta proteins (6)
	Alpha and beta proteins (a/b) (9)
	Artifacts (8)
	All alpha proteins (1)

AllSelected

1 to 25 of 48 Structures

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1G1F \| pdb_00001g1f	Download File View File

CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH A TRI-PHOSPHORYLATED PEPTIDE (RDI(PTR)ETD(PTR)(PTR)RK) FROM THE INSULIN RECEPTOR KINASE

Salmeen, A., Andersen, J.N., Myers, M.P., Tonks, N.K., Barford, D.

(2000) Mol Cell 6: 1401-1412

Released	2001-01-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN TYROSINE PHOSPHATASE 1B (protein) TRI-PHOSPHORYLATED PEPTIDE FROM THE INSULIN RECEPTOR KINASE (protein)

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1G1G \| pdb_00001g1g	Download File View File

CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH A MONO-PHOSPHORYLATED PEPTIDE (ETDY(PTR)RKGGKGLL) FROM THE INSULIN RECEPTOR KINASE

Salmeen, A., Andersen, J.N., Myers, M.P., Tonks, N.K., Barford, D.

(2000) Mol Cell 6: 1401-1412

Released	2001-01-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	MONO-PHOSPHORYLATED PEPTIDE FROM THE INSULIN RECEPTOR KINASE (protein) PROTEIN TYROSINE PHOSPHATASE 1B (protein)

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1G1H \| pdb_00001g1h	Download File View File

CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH A BIS-PHOSPHORYLATED PEPTIDE (ETD(PTR)(PTR)RKGGKGLL) FROM THE INSULIN RECEPTOR KINASE

Salmeen, A., Andersen, J.N., Myers, M.P., Tonks, N.K., Barford, D.

(2000) Mol Cell 6: 1401-1412

Released	2001-01-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	BI-PHOSPHORYLATED PEPTIDE FROM THE INSULIN RECEPTOR KINASE (protein) PROTEIN TYROSINE PHOSPHATASE 1B (protein)

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1SVK \| pdb_00001svk	Download File View File

Structure of the K180P mutant of Gi alpha subunit bound to AlF4 and GDP

Thomas, C.J., Du, X., Li, P., Wang, Y., Ross, E.M., Sprang, S.R.

(2004) Proc Natl Acad Sci U S A 101: 7560-7565

Released	2004-06-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus
Macromolecule	Guanine nucleotide-binding protein G(i), alpha-1 subunit (protein)
Unique Ligands	ALF, GDP, MG

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1SVS \| pdb_00001svs	Download File View File

Structure of the K180P mutant of Gi alpha subunit bound to GppNHp.

Thomas, C.J., Du, X., Li, P., Wang, Y., Ross, E.M., Sprang, S.R.

(2004) Proc Natl Acad Sci U S A 101: 7560-7565

Released	2004-06-01
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Rattus norvegicus
Macromolecule	Guanine nucleotide-binding protein G(i), alpha-1 subunit (protein)
Unique Ligands	GNP, MG

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1VJ6 \| pdb_00001vj6	Download File View File

PDZ2 from PTP-BL in complex with the C-terminal ligand from the APC protein

Walma, T., Vuister, G.W.

(2006) Structure 14: 1801-1809

Released	2005-11-01
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Adenomatous polyposis coli protein (protein) protein-tyrosine-phosphatase (nonreceptor type 13) (protein)

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1YWO \| pdb_00001ywo	Download File View File

Phospholipase Cgamma1 SH3 in complex with a SLP-76 motif

Deng, L., Velikovsky, C.A., Swaminathan, C.P., Cho, S., Mariuzza, R.A.

(2005) J Mol Biology 352: 1-10

Released	2005-08-16
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1 (protein) Lymphocyte cytosolic protein 2 (protein)

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2JRI \| pdb_00002jri	Download File View File

Solution structure of the Josephin domain of Ataxin-3 in complex with ubiquitin molecule.

Nicastro, G., Masino, L., Esposito, V., Menon, R., Pastore, A.

To be published

Released	2008-07-01
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ataxin-3 (protein) UBC protein (protein)

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2K2J \| pdb_00002k2j	Download File View File

NMR solution structure of the split PH domain from Phospholipase C gamma 2

Harris, R., Bunney, T.D., Katan, M., Driscoll, P.C.

(2008) J Biological Chem 283: 30351-30362

Released	2008-09-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2 (protein)

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2WQA \| pdb_00002wqa	Download File View File

Complex of TTR and RBP4 and Oleic Acid

Nanao, M., Mercer, D., Nguyen, L., Buckley, D., Stout, T.J.

To be published

Released	2010-09-01
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	RETINOL-BINDING PROTEIN 4 (protein) TRANSTHYRETIN (protein)
Unique Ligands	OLA, SO4

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2ZNV \| pdb_00002znv	Download File View File

Crystal structure of human AMSH-LP DUB domain in complex with Lys63-linked ubiquitin dimer

Sato, Y., Azusa, Y., Yamagata, A., Mimura, H., Wang, X., Yamashita, M., Ookata, K., Nureki, O., Iwai, K., Komada, M., Fukai, S.

(2008) Nature 455: 358-362

Released	2008-09-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	AMSH-like protease (protein) Ubiquitin (protein)
Unique Ligands	EDO, ZN

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3EC1 \| pdb_00003ec1	Download File View File

Structure of YqeH GTPase from Geobacillus stearothermophilus (an AtNOS1 / AtNOA1 ortholog)

Sudhamsu, J., Crane, B.R.

(2008) J Biological Chem 283: 32968-32976

Released	2008-10-21
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	GTP-binding protein YqeH required for biosis of 30S ribosome subunit (protein)
Unique Ligands	GDP

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3GFX \| pdb_00003gfx	Download File View File

Klebsiella pneumoniae BlrP1 pH 4.5 calcium/cy-diGMP complex

Barends, T., Hartmann, E., Griese, J., Beitlich, T., Kirienko, N., Ryjenkov, D., Reinstein, J., Shoeman, R., Gomelsky, M., Schlichting, I.

(2009) Nature 459: 1015-1018

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Macromolecule	Klebsiella pneumoniae BlrP1 (protein)
Unique Ligands	C2E, CA, FMN

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3GFY \| pdb_00003gfy	Download File View File

Klebsiella pneumoniae BlrP1 with FMN and cyclic diGMP, no metal ions

Barends, T., Hartmann, E., Griese, J., Beitlich, T., Kirienko, N., Ryjenkov, D., Reinstein, J., Shoeman, R., Gomelsky, M., Schlichting, I.

(2009) Nature 459: 1015-1018

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Macromolecule	Klebsiella pneumoniae BlrP1 (protein)
Unique Ligands	C2E, FMN

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3GFZ \| pdb_00003gfz	Download File View File

Klebsiella pneumoniae BlrP1 pH 6 manganese/cy-diGMP complex

Barends, T., Hartmann, E., Griese, J., Beitlich, T., Kirienko, N., Ryjenkov, D., Reinstein, J., Shoeman, R., Gomelsky, M., Schlichting, I.

(2009) Nature 459: 1015-1018

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Macromolecule	Klebsiella pneumoniae BlrP1 (protein)
Unique Ligands	C2E, FMN, MN

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3GG0 \| pdb_00003gg0	Download File View File

Klebsiella pneumoniae BlrP1 pH 9.0 manganese/cy-diGMP complex

Barends, T., Hartmann, E., Griese, J., Beitlich, T., Kirienko, N., Ryjenkov, D., Reinstein, J., Shoeman, R., Gomelsky, M., Schlichting, I.

(2009) Nature 459: 1015-1018

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Macromolecule	Klebsiella pneumoniae BlrP1 (protein)
Unique Ligands	C2E, FMN, MN

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3GG1 \| pdb_00003gg1	Download File View File

Klebsiella pneumoniae BlrP1 pH 8.0 calcium/cy-diGMP complex

Barends, T., Hartmann, E., Griese, J., Beitlich, T., Kirienko, N., Ryjenkov, D., Reinstein, J., Shoeman, R., Gomelsky, M., Schlichting, I.

(2009) Nature 459: 1015-1018

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Macromolecule	Klebsiella pneumoniae Blrp1 (protein)
Unique Ligands	C2E, CA, FMN

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3KVF \| pdb_00003kvf	Download File View File

Crystal structure of the I93M mutant of ubiquitin carboxy terminal hydrolase L1 bound to ubiquitin vinylmethylester

Davies, C.W., Maiti, T.K., Das, C.

(2010) Proc Natl Acad Sci U S A 107: 9117-9122

Released	2010-06-16
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (protein)
Unique Ligands	GVE

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3KW5 \| pdb_00003kw5	Download File View File

Crystal structure of ubiquitin carboxy terminal hydrolase L1 bound to ubiquitin vinylmethylester

Maiti, T.K., Boudreaux, D.A., Das, C.

(2010) Proc Natl Acad Sci U S A 107: 9117-9122

Released	2010-06-16
Method	X-RAY DIFFRACTION 2.83 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (protein)
Unique Ligands	GVE

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3PS5 \| pdb_00003ps5	Download File View File

Crystal structure of the full-length Human Protein Tyrosine Phosphatase SHP-1

Wang, W., Liu, L., Song, X., Mo, Y., Komma, C., Bellamy, H.D., Zhao, Z.J., Zhou, G.W.

(2011) J Cell Biochem 112: 2062-2071

Released	2011-04-20
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 6 (protein)
Unique Ligands	SO4

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3T12 \| pdb_00003t12	Download File View File

MglA in complex with MglB in transition state

Miertzschke, M., Vetter, I.R., Koerner, C., Wittinghofer, A.

(2011) EMBO J 30: 4185-4197

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Gliding protein MglB (protein) Gliding protein mglA (protein)
Unique Ligands	ALF, GDP, MG

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3T1Q \| pdb_00003t1q	Download File View File

MglA bound to GppNHp in complex with MglB

Miertzschke, M., Vetter, I.R., Koerner, C., Wittinghofer, A.

(2011) EMBO J 30: 4185-4197

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Gliding protein MglB (protein) Gliding protein mglA (protein)
Unique Ligands	GNP, MG

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3TM8 \| pdb_00003tm8	Download File View File

Bd1817, a HDG"Y"P protein from Bdellovibrio bacteriovorus

Lovering, A.L.

(2011) mBio 2:

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	Bdellovibrio bacteriovorus HD100
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	DMS, EDO, FE, PO4

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3TMB \| pdb_00003tmb	Download File View File

Bd1817, a HDG"Y"P protein from Bdellovibrio bacteriovorus

Lovering, A.L.

(2011) mBio 2:

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bdellovibrio bacteriovorus HD100
Macromolecule	Uncharacterized protein Bd1817 (protein)
Unique Ligands	FE, PO4

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3TMC \| pdb_00003tmc	Download File View File

Bd1817, a HDG"Y"P protein from Bdellovibrio bacteriovorus

Lovering, A.L.

(2011) mBio 2:

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Bdellovibrio bacteriovorus HD100
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	DMS, FE, PO4

1 to 25 of 48 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1G1F | pdb_00001g1f

1G1G | pdb_00001g1g

1G1H | pdb_00001g1h

1SVK | pdb_00001svk

1SVS | pdb_00001svs

1VJ6 | pdb_00001vj6

1YWO | pdb_00001ywo

2JRI | pdb_00002jri

2K2J | pdb_00002k2j

2WQA | pdb_00002wqa

2ZNV | pdb_00002znv

3EC1 | pdb_00003ec1

3GFX | pdb_00003gfx

3GFY | pdb_00003gfy

3GFZ | pdb_00003gfz

3GG0 | pdb_00003gg0

3GG1 | pdb_00003gg1

3KVF | pdb_00003kvf

3KW5 | pdb_00003kw5

3PS5 | pdb_00003ps5

3T12 | pdb_00003t12

3T1Q | pdb_00003t1q

3TM8 | pdb_00003tm8

3TMB | pdb_00003tmb

3TMC | pdb_00003tmc