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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "HYDROLASE/TRANSFERASE"

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Search Summary

This query matches 6,418 Structures.

Refinements

Structure Determination Methodology

experimental (6,418)

Scientific Name of Source Organism

	Saccharomyces cerevisiae (3,686)
	Saccharomyces cerevisiae S288C (2,662)
	synthetic construct (376)
	Homo sapiens (330)
	Xenopus laevis (86)
	Saccharomyces cerevisiae YJM789 (70)
	Saccharomyces cerevisiae RM11-1a (63)
	Mus musculus (44)
	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (38)
	Escherichia coli (37)

More...

Taxonomy

	Eukaryota (6,418)
	other sequences (377)
	Bacteria (148)
	Riboviria (45)
	Eukaryota (eukaryotes) (41)
	Duplodnaviria (17)
	Archaea (13)
	unclassified sequences (10)
	Monodnaviria (9)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

	X-RAY DIFFRACTION (4,482)
	ELECTRON MICROSCOPY (1,522)
	SOLUTION NMR (409)
	ELECTRON CRYSTALLOGRAPHY (5)
	NEUTRON DIFFRACTION (4)
	SOLUTION SCATTERING (3)

Polymer Entity Type

	Protein (6,387)
	RNA (713)
	DNA (610)
	NA-hybrid (5)
	Other (1)

Refinement Resolution (Å)

	0.5 - 1.0 (6)
	1.0 - 1.5 (265)
	1.5 - 2.0 (1,257)
	2.0 - 2.5 (1,242)
	2.5 - 3.0 (1,255)
	3.0 - 3.5 (914)
	3.5 - 4.0 (487)
	4.0 - 4.5 (208)
	> 4.5 (375)

Release Date

	1975 - 1979 (3)
	1980 - 1984 (4)
	1985 - 1989 (7)
	1990 - 1994 (71)
	1995 - 1999 (210)
	2000 - 2004 (527)
	2005 - 2009 (916)
	2010 - 2014 (1,202)
	2015 - 2019 (1,515)
	2020 - 2024 (1,885)

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Enzyme Classification Name

	Hydrolases (1,626)
	Transferases (1,299)
	Oxidoreductases (570)
	Translocases (165)
	Ligases (159)
	Isomerases (136)
	Lyases (140)

Membrane Protein Annotation

	PDBTM (307)
	mpstruc (218)
	OPM (212)
	MemProtMD (203)

Symmetry Type

	Asymmetric (4,649)
	Cyclic (1,690)
	Dihedral (233)
	Helical (37)
	Octahedral (4)
	Tetrahedral (4)
	Icosahedral (3)

SCOP Classification

	Alpha and beta proteins (a+b) (868)
	Alpha and beta proteins (a/b) (787)
	All alpha proteins (795)
	Artifacts (694)
	All beta proteins (584)
	Coiled coil proteins (80)
	Low resolution protein structures (28)
	Membrane and cell surface proteins and peptides (18)
	Small proteins (97)
	Multi-domain proteins (alpha and beta) (68)

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AllSelected

1 to 25 of 6,418 Structures

Page 1 of 257

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Explore in 3D

117E \| pdb_0000117e	Download File View File

THE R78K AND D117E ACTIVE SITE VARIANTS OF SACCHAROMYCES CEREVISIAE SOLUBLE INORGANIC PYROPHOSPHATASE: STRUCTURAL STUDIES AND MECHANISTIC IMPLICATIONS

Tuominen, V., Heikinheimo, P., Kajander, T., Torkkel, T., Hyytia, T., Kapyla, J., Lahti, R., Cooperman, B.S., Goldman, A.

(1998) J Mol Biology 284: 1565-1580

Released	1998-12-23
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (INORGANIC PYROPHOSPHATASE) (protein)
Unique Ligands	MN, PO4

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1A0A \| pdb_00001a0a	Download File View File

PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4/DNA COMPLEX

Shimizu, T., Toumoto, A., Ihara, K., Shimizu, M., Kyogoku, Y., Ogawa, N., Oshima, Y., Hakoshima, T.

(1997) EMBO J 16: 4689-4697

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4) (protein) DNA (5'-D(CPTPAPGPTPCPCPCPAPCPGPTPGPTPGPAPG )-3') (nucleic acid) DNA (5'-D(CPTPCPAPCPAPCPGPTPGPGPGPAPCPTPAPG )-3') (nucleic acid)

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1A1D \| pdb_00001a1d	Download File View File

YEAST RNA POLYMERASE SUBUNIT RPB8, NMR, MINIMIZED AVERAGE STRUCTURE, ALPHA CARBONS ONLY

Krapp, S., Kelly, G., Reischl, J., Weinzierl, R., Matthews, S.

(1998) Nat Struct Biol 5: 110-114

Released	1999-03-02
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	RNA POLYMERASE (protein)

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1A2F \| pdb_00001a2f	Download File View File

PROBING THE STRENGTH AND CHARACTER OF AN ASP-HIS-X HYDROGEN BOND BY INTRODUCING BURIED CHARGES

Cao, Y., Goodin, D.B., Mcree, D.E.

To be published

Released	1998-11-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM

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1A2G \| pdb_00001a2g	Download File View File

PROBING THE STRENGTH AND CHARACTER OF AN ASP-HIS-X HYDROGEN BOND BY INTRODUCING BURIED CHARGES

Cao, Y., Goodin, D.B., Mcree, D.E.

To be published

Released	1998-11-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM

Explore in 3D

1A3W \| pdb_00001a3w	Download File View File

PYRUVATE KINASE FROM SACCHAROMYCES CEREVISIAE COMPLEXED WITH FBP, PG, MN2+ AND K+

Jurica, M.S., Mesecar, A., Heath, P.J., Shi, W., Nowak, T., Stoddard, B.L.

(1998) Structure 6: 195-210

Released	1998-05-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PYRUVATE KINASE (protein)
Unique Ligands	FBP, K, MN, PGA

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1A3X \| pdb_00001a3x	Download File View File

PYRUVATE KINASE FROM SACCHAROMYCES CEREVISIAE COMPLEXED WITH PG, MN2+ AND K+

Jurica, M.S., Mesecar, A., Heath, P.J., Shi, W., Nowak, T., Stoddard, B.L.

(1998) Structure 6: 195-210

Released	1998-05-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PYRUVATE KINASE (protein)
Unique Ligands	K, MN, PGA

Explore in 3D

1A48 \| pdb_00001a48	Download File View File

SAICAR SYNTHASE

Levdikov, V.M., Melik-Adamyan, W.R., Lamzin, V.S., Wilson, K.S.

(1998) Structure 6: 363-376

Released	1999-03-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE (protein)
Unique Ligands	SO4

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1A4E \| pdb_00001a4e	Download File View File

CATALASE A FROM SACCHAROMYCES CEREVISIAE

Mate, M.J.

(1999) J Mol Biology 286: 135-149

Released	1999-08-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CATALASE A (protein)
Unique Ligands	AZI, HEM, SO4

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1A4H \| pdb_00001a4h	Download File View File

STRUCTURE OF THE N-TERMINAL DOMAIN OF THE YEAST HSP90 CHAPERONE IN COMPLEX WITH GELDANAMYCIN

Prodromou, C., Roe, S.M., Pearl, L.H.

(1997) Cell 90: 65-75

Released	1998-08-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	HEAT SHOCK PROTEIN 90 (protein)
Unique Ligands	GDM

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1A6R \| pdb_00001a6r	Download File View File

GAL6 (YEAST BLEOMYCIN HYDROLASE) MUTANT C73A

Joshua-Tor, L., Zheng, W., Johnston, S.A.

(1998) Cell 93: 103-109

Released	1998-10-21
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	GAL6 (protein)
Unique Ligands	SO4

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1AA4 \| pdb_00001aa4	Download File View File

SPECIFICITY OF LIGAND BINDING IN A BURIED POLAR CAVITY OF CYTOCHROME C PEROXIDASE

Musah, R.A., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(1996) Nat Struct Biol 3: 626-631

Released	1997-07-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM

Explore in 3D

1AC4 \| pdb_00001ac4	Download File View File

VARIATION IN THE STRENGTH OF A CH TO O HYDROGEN BOND IN AN ARTIFICIAL PROTEIN CAVITY (2,3,4-TRIMETHYL-1,3-THIAZOLE)

Musah, R.A., Jensen, G.M., Bunte, S.W., Rosenfeld, R., Mcree, D.E., Goodin, D.B.

(1997) J Am Chem Soc 119: 626-631

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM, TMT

Explore in 3D

1AC5 \| pdb_00001ac5	Download File View File

CRYSTAL STRUCTURE OF KEX1(DELTA)P, A PROHORMONE-PROCESSING CARBOXYPEPTIDASE FROM SACCHAROMYCES CEREVISIAE

Shilton, B.H., Thomas, D.Y., Cygler, M.

(1997) Biochemistry 36: 9002-9012

Released	1997-05-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	KEX1(DELTA)P (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

1AC8 \| pdb_00001ac8	Download File View File

VARIATION IN THE STRENGTH OF A CH TO O HYDROGEN BOND IN AN ARTIFICIAL PROTEIN CAVITY (3,4,5-TRIMETHYLTHIAZOLE)

Musah, R.A., Jensen, G.M., Bunte, S.W., Rosenfeld, R., Mcree, D.E., Goodin, D.B.

(1997) J Am Chem Soc 119: 626-631

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM, TMZ

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1AEB \| pdb_00001aeb	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (3-METHYLTHIAZOLE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	3MT, HEM

Explore in 3D

1AED \| pdb_00001aed	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (3,4-DIMETHYLTHIAZOLE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	DTI, HEM

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1AEE \| pdb_00001aee	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (ANILINE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	ANL, HEM

Explore in 3D

1AEF \| pdb_00001aef	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (3-AMINOPYRIDINE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	3AP, HEM

Explore in 3D

1AEG \| pdb_00001aeg	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (4-AMINOPYRIDINE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	4AP, HEM

Explore in 3D

1AEH \| pdb_00001aeh	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (2-AMINO-4-METHYLTHIAZOLE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	24T, HEM

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1AEJ \| pdb_00001aej	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (1-VINYLIMIDAZOLE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM, NVI

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1AEK \| pdb_00001aek	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (INDOLINE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM, IDM

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1AEM \| pdb_00001aem	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (IMIDAZO[1,2-A]PYRIDINE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM, MPI

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1AEN \| pdb_00001aen	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (2-AMINO-5-METHYLTHIAZOLE)

Musah, R.A., Jensen, G.M., Bunte, S.W., Rosenfeld, R., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	25T, HEM

1 to 25 of 6,418 Structures

Page 1 of 257

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

117E | pdb_0000117e

1A0A | pdb_00001a0a

1A1D | pdb_00001a1d

1A2F | pdb_00001a2f

1A2G | pdb_00001a2g

1A3W | pdb_00001a3w

1A3X | pdb_00001a3x

1A48 | pdb_00001a48

1A4E | pdb_00001a4e

1A4H | pdb_00001a4h

1A6R | pdb_00001a6r

1AA4 | pdb_00001aa4

1AC4 | pdb_00001ac4

1AC5 | pdb_00001ac5

1AC8 | pdb_00001ac8

1AEB | pdb_00001aeb

1AED | pdb_00001aed

1AEE | pdb_00001aee

1AEF | pdb_00001aef

1AEG | pdb_00001aeg

1AEH | pdb_00001aeh

1AEJ | pdb_00001aej

1AEK | pdb_00001aek

1AEM | pdb_00001aem

1AEN | pdb_00001aen