RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Keywords HAS EXACT PHRASE "ISOMERASE/LYASE"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Pseudomonas fluorescens (3)
	Oceanobacillus iheyensis (2)
	Bacteroides thetaiotaomicron (1)
	Escherichia coli (1)
	Escherichia coli K-12 (1)
	Macaca fascicularis (1)
	Methanosarcina mazei Go1 (1)
	Oceanobacillus iheyensis HTE831 (1)
	Paraglaciecola sp. T6c (1)

Taxonomy

	Bacteria (10)
	Archaea (1)
	Eukaryota (1)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (5)
	2010 - 2014 (2)
	2015 - 2019 (1)

Enzyme Classification Name

	Lyases (7)
	Isomerases (6)

Symmetry Type

	Cyclic (9)
	Asymmetric (2)
	Dihedral (4)

SCOP Classification

	Alpha and beta proteins (a+b) (7)
	Alpha and beta proteins (a/b) (5)
	All alpha proteins (1)
	Artifacts (3)

AllSelected

1 to 12 of 12 Structures

Page 1 of 1

Sort by

Explore in 3D

1I7O \| pdb_00001i7o	Download File View File

CRYSTAL STRUCTURE OF HPCE

Tame, J.R.H., Namba, K., Dodson, E.J., Roper, D.I.

To be published

Released	2001-03-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	4-HYDROXYPHENYLACETATE DEGRADATION BIFUNCTIONAL ISOMERASE/DECARBOXYLASE (protein)
Unique Ligands	CA

Explore in 3D

1U1V \| pdb_00001u1v	Download File View File

Structure and function of phenazine-biosynthesis protein PhzF from Pseudomonas fluorescens 2-79

Blankenfeldt, W., Kuzin, A.P., Skarina, T., Korniyenko, Y., Tong, L., Bayer, P., Janning, P., Thomashow, L.S., Mavrodi, D.V.

(2004) Proc Natl Acad Sci U S A 101: 16431-16437

Released	2004-11-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudomonas fluorescens
Macromolecule	Phenazine biosynthesis protein phzF (protein)
Unique Ligands	GOL, SO4

Explore in 3D

1U1W \| pdb_00001u1w	Download File View File

Structure and function of phenazine-biosynthesis protein PhzF from Pseudomonas fluorescens 2-79

Blankenfeldt, W., Kuzin, A.P., Skarina, T., Korniyenko, Y., Tong, L., Bayer, P., Janning, P., Thomashow, L.S., Mavrodi, D.V.

(2004) Proc Natl Acad Sci U S A 101: 16431-16437

Released	2004-11-02
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Pseudomonas fluorescens
Macromolecule	Phenazine biosynthesis protein phzF (protein)
Unique Ligands	3HA, ACT, GOL

Explore in 3D

1U1X \| pdb_00001u1x	Download File View File

Structure and function of phenazine-biosynthesis protein PhzF from Pseudomonas fluorescens 2-79

Blankenfeldt, W., Kuzin, A.P., Skarina, T., Korniyenko, Y., Tong, L., Bayer, P., Janning, P., Thomashow, L.S., Mavrodi, D.V.

(2004) Proc Natl Acad Sci U S A 101: 16431-16437

Released	2004-11-02
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Pseudomonas fluorescens
Macromolecule	Phenazine biosynthesis protein phzF (protein)
Unique Ligands	HHA

Explore in 3D

2PBJ \| pdb_00002pbj	Download File View File

GSH-heme bound microsomal prostaglandin E synthase

Takusagawa, F., Yamada, T.

(2007) Biochemistry 46: 8414-8424

Released	2008-02-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Macaca fascicularis
Macromolecule	Prostaglandin E synthase 2 (protein)
Unique Ligands	CL, GSH, HEM

Explore in 3D

3DHN \| pdb_00003dhn	Download File View File

Crystal structure of the putative epimerase Q89Z24_BACTN from Bacteroides thetaiotaomicron. Northeast Structural Genomics Consortium target BtR310.

Vorobiev, S.M., Su, M., Seetharaman, J., Wang, D., Ciccosanti, C., Foote, L.E., Janjua, H., Xiao, R., Acton, T., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2008-08-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	NAD-dependent epimerase/dehydratase (protein)

Explore in 3D

3ES7 \| pdb_00003es7	Download File View File

Crystal structure of divergent enolase from Oceanobacillus Iheyensis complexed with Mg and L-malate.

Fedorov, A.A., Fedorov, E.V., Sauder, J.M., Burley, S.K., Gerlt, J.A., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2009) Biochemistry 48: 11546-11558

Released	2008-10-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Oceanobacillus iheyensis
Macromolecule	Muconate cycloisomerase (protein)
Unique Ligands	LMR, MG

Explore in 3D

3ES8 \| pdb_00003es8	Download File View File

Crystal structure of divergent enolase from Oceanobacillus Iheyensis complexed with Mg and L-malate.

Fedorov, A.A., Fedorov, E.V., Sauder, J.M., Burley, S.K., Gerlt, J.A., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2009) Biochemistry 48: 11546-11558

Released	2008-10-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Oceanobacillus iheyensis
Macromolecule	Muconate cycloisomerase (protein)
Unique Ligands	LMR, MG

Explore in 3D

3GD6 \| pdb_00003gd6	Download File View File

Crystal structure of divergent enolase from Oceanobacillus iheyensis complexed with phosphate

Fedorov, A.A., Fedorov, E.V., Sauder, J.M., Burley, S.K., Gerlt, J.A., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Oceanobacillus iheyensis HTE831
Macromolecule	Muconate cycloisomerase (protein)
Unique Ligands	PO4

Explore in 3D

3R6A \| pdb_00003r6a	Download File View File

Crystal structure of an uncharacterized protein (hypothetical protein MM_3218) from Methanosarcina mazei.

Eswaramoorthy, S., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2011-04-06
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	ACT

Explore in 3D

4FZW \| pdb_00004fzw	Download File View File

Crystal Structure of the PaaF-PaaG Hydratase-Isomerase Complex from E.coli

Grishin, A.M., Cygler, M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2012) J Biological Chem 287: 37986-37996

Released	2012-09-19
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Escherichia coli K-12
Macromolecule	1,2-epoxyphenylacetyl-CoA isomerase (protein) 2,3-dehydroadipyl-CoA hydratase (protein)
Unique Ligands	GOL

Explore in 3D

5VE2 \| pdb_00005ve2	Download File View File

Crystal structure of enoyl-CoA hydratase/isomerase from Pseudoalteromonas atlantica T6c at 2.3 A resolution.

Siuda, M.K., Shabalin, I.G., Cooper, D.R., Chapman, H.C., Tkaczuk, K.L., Bonanno, J., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Paraglaciecola sp. T6c
Macromolecule	Enoyl-CoA hydratase (protein)
Unique Ligands	1PE, GOL, NA, PEG

1 to 12 of 12 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1I7O | pdb_00001i7o

CRYSTAL STRUCTURE OF HPCE

1U1V | pdb_00001u1v

Structure and function of phenazine-biosynthesis protein PhzF from Pseudomonas fluorescens 2-79

1U1W | pdb_00001u1w

Structure and function of phenazine-biosynthesis protein PhzF from Pseudomonas fluorescens 2-79

1U1X | pdb_00001u1x

Structure and function of phenazine-biosynthesis protein PhzF from Pseudomonas fluorescens 2-79

2PBJ | pdb_00002pbj

GSH-heme bound microsomal prostaglandin E synthase

3DHN | pdb_00003dhn

Crystal structure of the putative epimerase Q89Z24_BACTN from Bacteroides thetaiotaomicron. Northeast Structural Genomics Consortium target BtR310.

3ES7 | pdb_00003es7

Crystal structure of divergent enolase from Oceanobacillus Iheyensis complexed with Mg and L-malate.

3ES8 | pdb_00003es8

Crystal structure of divergent enolase from Oceanobacillus Iheyensis complexed with Mg and L-malate.

3GD6 | pdb_00003gd6

Crystal structure of divergent enolase from Oceanobacillus iheyensis complexed with phosphate

3R6A | pdb_00003r6a

Crystal structure of an uncharacterized protein (hypothetical protein MM_3218) from Methanosarcina mazei.

4FZW | pdb_00004fzw

Crystal Structure of the PaaF-PaaG Hydratase-Isomerase Complex from E.coli

5VE2 | pdb_00005ve2

Crystal structure of enoyl-CoA hydratase/isomerase from Pseudoalteromonas atlantica T6c at 2.3 A resolution.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1I7O | pdb_00001i7o

1U1V | pdb_00001u1v

1U1W | pdb_00001u1w

1U1X | pdb_00001u1x

2PBJ | pdb_00002pbj

3DHN | pdb_00003dhn

3ES7 | pdb_00003es7

3ES8 | pdb_00003es8

3GD6 | pdb_00003gd6

3R6A | pdb_00003r6a

4FZW | pdb_00004fzw

5VE2 | pdb_00005ve2