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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "TRANSCRIPTION/TRANSFERASE"

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Search Summary

This query matches 182 Structures.

Refinements

Structure Determination Methodology

experimental (182)

Scientific Name of Source Organism

	synthetic construct (52)
	Homo sapiens (51)
	Escherichia coli (39)
	Saccharomyces cerevisiae (28)
	Escherichia coli K-12 (23)
	Thermus thermophilus HB8 (12)
	Human immunodeficiency virus 1 (11)
	Mycobacterium tuberculosis (9)
	Escherichia coli O157:H7 (7)
	Sus scrofa (6)

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Taxonomy

	Bacteria (85)
	Eukaryota (82)
	other sequences (52)
	Riboviria (12)
	Eukaryota (eukaryotes) (4)
	Varidnaviria (3)

Experimental Method

	X-RAY DIFFRACTION (110)
	ELECTRON MICROSCOPY (66)
	SOLUTION NMR (6)

Polymer Entity Type

	Protein (182)
	DNA (126)
	RNA (78)
	NA-hybrid (3)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (10)
	2.0 - 2.5 (18)
	2.5 - 3.0 (38)
	3.0 - 3.5 (36)
	3.5 - 4.0 (35)
	4.0 - 4.5 (24)
	> 4.5 (14)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (44)
	2010 - 2014 (28)
	2015 - 2019 (28)
	2020 - 2024 (74)
	2025 - 2029 (5)

Enzyme Classification Name

	Transferases (171)
	Hydrolases (17)
	Isomerases (9)

Symmetry Type

	Asymmetric (173)
	Cyclic (10)
	Dihedral (1)

SCOP Classification

	All alpha proteins (22)
	Alpha and beta proteins (a+b) (13)
	Multi-domain proteins (alpha and beta) (16)
	Low resolution protein structures (3)
	Alpha and beta proteins (a/b) (16)
	Small proteins (10)
	All beta proteins (8)
	Artifacts (4)
	Peptides (1)

AllSelected

1 to 25 of 182 Structures

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1NON \| pdb_00001non	Download File View File

PyrR, the regulator of the pyrimidine biosynthetic operon in Bacillus caldolyticus

Switzer, R.L., Chander, P., Smith, J.L., Halbig, K.M., Miller, J.K., Bonner, H.K., Grabner, G.K.

(2005) J Bacteriol 187: 1773-1782

Released	2004-05-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	[Bacillus] caldolyticus
Macromolecule	PyrR bifunctional protein (protein)

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1NT9 \| pdb_00001nt9	Download File View File

Complete 12-subunit RNA polymerase II

Armache, K.-J., Kettenberger, H., Cramer, P.

(2003) Proc Natl Acad Sci U S A 100: 6964-6968

Released	2003-04-22
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 12

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1P4Q \| pdb_00001p4q	Download File View File

Solution structure of the CITED2 transactivation domain in complex with the p300 CH1 domain

Freedman, S.J., Sun, Z.-Y.J., Kung, A.L., France, D.S., Wagner, G., Eck, M.J.

(2003) Nat Struct Biol 10: 504-512

Released	2003-07-01
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Cbp/p300-interacting transactivator 2 (protein) E1A-associated protein p300 (protein)
Unique Ligands	ZN

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1XIU \| pdb_00001xiu	Download File View File

Crystal structure of the agonist-bound ligand-binding domain of Biomphalaria glabrata RXR

De Groot, A., De Rosny, E., Juillan-Binard, C., Ferrer, J.-L., Laudet, V., Pebay-Peroula, E., Fontecilla-Camps, J.-C., Borel, F.

(2005) J Mol Biology 354: 841-853

Released	2005-09-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Biomphalaria glabrata Homo sapiens
Macromolecule	Nuclear receptor coactivator 1 (protein) RXR-like protein (protein)
Unique Ligands	9CR

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1XZ8 \| pdb_00001xz8	Download File View File

Pyrr, The Regulator Of The Pyrimidine Biosynthetic Operon In Bacillus caldolyticus, Nucleotide-bound form

Chander, P., Halbig, K.M., Miller, J.K., Fields, C.J., Bonner, H.K., Grabner, G.K., Switzer, R.L., Smith, J.L.

(2005) J Bacteriol 187: 1773-1782

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	[Bacillus] caldolyticus
Macromolecule	PyrR bifunctional protein (protein)
Unique Ligands	3GP, 5GP, MG, U5P

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1XZN \| pdb_00001xzn	Download File View File

PYRR, THE REGULATOR OF THE PYRIMIDINE BIOSYNTHETIC OPERON IN BACILLUS CALDOLYTICUS, sulfate-bound form

Chander, P., Halbig, K.M., Miller, J.K., Fields, C.J., Bonner, H.K., Grabner, G.K., Switzer, R.L., Smith, J.L.

(2005) J Bacteriol 187: 1773-1782

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	[Bacillus] caldolyticus
Macromolecule	PyrR bifunctional protein (protein)
Unique Ligands	MG, SO4

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1ZAF \| pdb_00001zaf	Download File View File

Crystal structure of estrogen receptor beta complexed with 3-Bromo-6-hydroxy-2-(4-hydroxy-phenyl)-inden-1-one

McDevitt, R.E., Malamas, M.S., Manas, E.S., Unwalla, R.J., Xu, Z.B., Miller, C.P., Harris, H.A.

(2005) Bioorg Med Chem Lett 15: 3137-3142

Released	2006-04-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Estrogen receptor beta (protein) Nuclear receptor coactivator 1 (protein)
Unique Ligands	789

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1ZOQ \| pdb_00001zoq	Download File View File

IRF3-CBP complex

Qin, B., Lin, K.

(2005) Structure 13: 1269-1277

Released	2006-03-21
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Homo sapiens
Macromolecule	CREB-binding protein (protein) Interferon regulatory factor 3 (protein)

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1ZYR \| pdb_00001zyr	Download File View File

Structure of Thermus thermophilus RNA polymerase holoenzyme in complex with the antibiotic streptolydigin

Tuske, S., Sarafianos, S.G., Wang, X., Hudson, B., Sineva, E., Mukhopadhyay, J., Birktoft, J.J., Leroy, O., Ismail, S., Clark, A.D., Dharia, C., Napoli, A., Laptenko, O., Lee, J., Borukhov, S., Ebright, R.H., Arnold, E.

(2005) Cell 122: 541-552

Released	2005-09-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermus thermophilus
Macromolecule	DNA-directed RNA polymerase alpha chain (protein) DNA-directed RNA polymerase beta chain (protein) DNA-directed RNA polymerase omega chain (protein) DNA-directed RNA polymerase sigma chain (protein) DNA-directed RNA polymerase subunit beta' chain (protein)
Unique Ligands	MG, STD, ZN

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2AR0 \| pdb_00002ar0	Download File View File

Crystal structure of Type I restriction enzyme EcoKI M protein (EC 2.1.1.72) (M.EcoKI)

Rajashankar, K.R., Kniewel, R., Lima, C.D., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2005-08-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	Type I restriction enzyme EcoKI M protein (protein)
Unique Ligands	UNX

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2IJN \| pdb_00002ijn	Download File View File

Isothiazoles as active-site inhibitors of HCV NS5B polymerase

Yan, S., Yao, N.

(2007) Bioorg Med Chem Lett 17: 28-33

Released	2006-11-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Hepatitis C virus subtype 1b
Macromolecule	RNA polymerase NS5B (protein)
Unique Ligands	221

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2LTO \| pdb_00002lto	Download File View File

TDRD3 complex

Sikorsky, T.

(2012) Nucleic Acids Res 40: 11748-11755

Released	2013-01-16
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA-directed RNA polymerase II subunit RPB1 (protein) Tudor domain-containing protein 3 (protein)

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2MH0 \| pdb_00002mh0	Download File View File

Solution NMR structure of the p300 Taz2:ETAD1 complex

Langelaan, D.N., Smith, S.P., Chitayat, S.

(2020) J Biological Chem 295: 4303-4315

Released	2014-11-12
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Histone acetyltransferase p300 (protein) Transcription factor E2-alpha (protein)

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2NCZ \| pdb_00002ncz	Download File View File

Solution NMR structures of BRD4 ET domain in complex with NSD3_1 peptide

Zeng, L., Zhou, M.

(2016) Structure 24: 1201-1208

Released	2016-06-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) Histone-lysine N-methyltransferase NSD3 (protein)

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2ND1 \| pdb_00002nd1	Download File View File

Solution NMR structures of BRD4 ET domain in complex with NSD3_3 peptide

Zeng, L., Zhou, M.

(2016) Structure 24: 1201-1208

Released	2016-06-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) Histone-lysine N-methyltransferase NSD3 (protein)

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3CTB \| pdb_00003ctb	Download File View File

Tethered PXR-LBD/SRC-1p apoprotein

Lesburg, C.A.

(2008) Protein Eng Des Sel 21: 425-433

Released	2008-12-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Pregnane X receptor, Linker, Steroid receptor coactivator 1 (protein)

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3DXJ \| pdb_00003dxj	Download File View File

Crystal structure of thermus thermophilus rna polymerase holoenzyme in complex with the antibiotic myxopyronin

Das, K., Arnold, E.

(2008) Cell 135: 295-307

Released	2008-10-14
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermus thermophilus HB8
Macromolecule	BACTERIAL RNA POLYMERASE BETA SUBUNIT; CHAIN C, M (protein) BACTERIAL RNA POLYMERASE BETA-PRIME SUBUNIT; CHAIN D, N (protein) BACTERIAL RNA POLYMERASE OMEGA SUBUNIT; CHAIN E, O (protein) DNA-directed RNA polymerase subunit alpha; CHAIN A, B, K, L (protein) RNA polymerase pricipal sigma factor (RpoD); CHAIN F, P (protein)
Unique Ligands	MG, MPD, NE6, PO4, ZN

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3ET1 \| pdb_00003et1	Download File View File

Structure of PPARalpha with 3-[5-Methoxy-1-(4-methoxy-benzenesulfonyl)-1H-indol-3-yl]-propionic acid

Zhang, K.Y.J., Wang, W.

(2009) Proc Natl Acad Sci U S A 106: 262-267

Released	2009-02-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor alpha (protein) Steroid receptor coactivator 1 (protein)
Unique Ligands	ET1

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3G8I \| pdb_00003g8i	Download File View File

Aleglitazar, a new, potent, and balanced PPAR alpha/gamma agonist for the treatment of type II diabetes

Benz, J., Bernardeau, A., Binggeli, A., Blum, D., Boehringer, M., Grether, U., Hilpert, H., Kuhn, B., Maerki, H.P., Meyer, M., Puentener, K., Raab, S., Ruf, A., Schlatter, D., Gsell, B., Stihle, M., Mohr, P.

(2009) Bioorg Med Chem Lett 19: 2468-2473

Released	2009-06-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 1 (protein) Peroxisome proliferator-activated receptor alpha (protein)
Unique Ligands	RO7

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3G9E \| pdb_00003g9e	Download File View File

Aleglitaar. a new. potent, and balanced dual ppara/g agonist for the treatment of type II diabetes

Ruf, A., Benz, J., Bernardeau, A., Binggeli, A., Blum, D., Boehringer, M., Grether, U., Hilpert, H., Kuhn, B., Maerki, H.P., Meyer, M., Puenterner, K., Raab, S., Schlatter, D., Gsell, B., Stihle, M., Mohr, P.

(2009) Bioorg Med Chem Lett 19: 2468-2473

Released	2009-06-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 1 (protein) Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	RO7

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3GFK \| pdb_00003gfk	Download File View File

Crystal structure of Bacillus subtilis Spx/RNA polymerase alpha subunit C-terminal domain complex

Lamour, V., Westblade, L.F., Campbell, E.A., Darst, S.A.

(2009) J Struct Biol 168: 352-356

Released	2009-03-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	DNA-directed RNA polymerase subunit alpha (protein) Regulatory protein spx (protein)

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3HVL \| pdb_00003hvl	Download File View File

Tethered PXR-LBD/SRC-1p complexed with SR-12813

Lesburg, C.A., Wang, W., Prosise, W.W., Chen, J., Taremi, S.S., Le, H.V., Madison, V., Cui, X., Thomas, A., Cheng, K.C.

(2008) Protein Eng Des Sel 21: 425-433

Released	2009-08-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Pregnane X receptor, Linker, Steroid receptor coactivator 1 (protein)
Unique Ligands	SRL

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3IHQ \| pdb_00003ihq	Download File View File

Crystal Structure of Reduced C10S Spx in Complex with the Alpha C-terminal Domain of RNA Polymeras

Newberry, K.J., Brennan, R.G.

(2010) PLoS One 5: e8664-e8664

Released	2010-02-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis
Macromolecule	DNA-directed RNA polymerase subunit alpha (protein) Regulatory protein spx (protein)
Unique Ligands	IMD

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4DQM \| pdb_00004dqm	Download File View File

Revealing a marine natural product as a novel agonist for retinoic acid receptors with a unique binding mode and antitumor activity

Wang, S., Wang, Z., Lin, S., Zheng, W., Wang, R., Jin, S., Chen, J., Jin, L., Li, Y.

(2012) Biochem J 446: 79-87

Released	2012-10-03
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 1 (protein) Retinoic acid receptor alpha (protein)
Unique Ligands	LUF

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4ERQ \| pdb_00004erq	Download File View File

X-ray structure of WDR5-MLL2 Win motif peptide binary complex

Dharmarajan, V., Lee, J.-H., Patel, A., Skalnik, D.G., Cosgrove, M.S.

(2012) J Biological Chem 287: 27275-27289

Released	2012-05-16
Method	X-RAY DIFFRACTION 1.906 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase MLL2 (protein) WD repeat-containing protein 5 (protein)

1 to 25 of 182 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1NON | pdb_00001non

1NT9 | pdb_00001nt9

1P4Q | pdb_00001p4q

1XIU | pdb_00001xiu

1XZ8 | pdb_00001xz8

1XZN | pdb_00001xzn

1ZAF | pdb_00001zaf

1ZOQ | pdb_00001zoq

1ZYR | pdb_00001zyr

2AR0 | pdb_00002ar0

2IJN | pdb_00002ijn

2LTO | pdb_00002lto

2MH0 | pdb_00002mh0

2NCZ | pdb_00002ncz

2ND1 | pdb_00002nd1

3CTB | pdb_00003ctb

3DXJ | pdb_00003dxj

3ET1 | pdb_00003et1

3G8I | pdb_00003g8i

3G9E | pdb_00003g9e

3GFK | pdb_00003gfk

3HVL | pdb_00003hvl

3IHQ | pdb_00003ihq

4DQM | pdb_00004dqm

4ERQ | pdb_00004erq