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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "TRANSFERASE, LYASE"

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Search Summary

This query matches 129 Structures.

Refinements

Structure Determination Methodology

experimental (129)

Scientific Name of Source Organism

	Homo sapiens (100)
	synthetic construct (41)
	Escherichia coli K-12 (4)
	Methanothermobacter thermautotrophicus (4)
	Rattus norvegicus (4)
	Mus musculus (3)
	Saccharomyces cerevisiae (3)
	Moorena producens 19L (2)
	Moorena producens 3L (2)
	Streptomyces atroolivaceus (2)

More...

Taxonomy

	Eukaryota (113)
	other sequences (41)
	Bacteria (12)
	Archaea (4)

Experimental Method

	X-RAY DIFFRACTION (128)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (129)
	DNA (100)
	NA-hybrid (3)

Refinement Resolution (Å)

	1.5 - 2.0 (37)
	2.0 - 2.5 (66)
	2.5 - 3.0 (22)
	3.0 - 3.5 (3)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (7)
	2005 - 2009 (20)
	2010 - 2014 (68)
	2015 - 2019 (33)
	2020 - 2024 (1)

Enzyme Classification Name

	Lyases (120)
	Transferases (124)
	Hydrolases (8)

Symmetry Type

	Asymmetric (109)
	Cyclic (14)
	Dihedral (7)

SCOP Classification

	All alpha proteins (47)
	Alpha and beta proteins (a/b) (17)
	Alpha and beta proteins (a+b) (47)
	Artifacts (4)

AllSelected

1 to 25 of 129 Structures

Page 1 of 6

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1KXZ \| pdb_00001kxz	Download File View File

MT0146, the Precorrin-6y methyltransferase (CbiT) homolog from M. Thermoautotrophicum, P1 spacegroup

Keller, J.P., Smith, P.M., Benach, J., Christendat, D., DeTitta, G., Hunt, J.F.

(2002) Structure 10: 1475-1487

Released	2002-11-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	Precorrin-6y methyltransferase/putative decarboxylase (protein)

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1L3B \| pdb_00001l3b	Download File View File

MT0146, THE PRECORRIN-6Y METHYLTRANSFERASE (CBIT) HOMOLOG FROM M. THERMOAUTOTROPHICUM, C2 SPACEGROUP W/ LONG CELL

Keller, J.P., Smith, P.M., Benach, J., Christendat, D., deTitta, G., Hunt, J.F.

(2002) Structure 10: 1475-1487

Released	2002-11-27
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	Precorrin-6y methyltransferase/putative decarboxylase (protein)

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1L3C \| pdb_00001l3c	Download File View File

MT0146, THE PRECORRIN-6Y METHYLTRANSFERASE (CBIT) HOMOLOG FROM M. THERMOAUTOTROPHICUM, C2 SPACEGROUP WITH SHORT CELL

Keller, J.P., Smith, P.M., Benach, J., Christendat, D., deTitta, G., Hunt, J.F.

(2002) Structure 10: 1475-1487

Released	2002-11-27
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	Precorrin-6y methyltransferase/putative decarboxylase (protein)

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1L3I \| pdb_00001l3i	Download File View File

MT0146, THE PRECORRIN-6Y METHYLTRANSFERASE (CBIT) HOMOLOG FROM M. THERMOAUTOTROPHICUM, ADOHCY BINARY COMPLEX

Keller, J.P., Smith, P.M., Benach, J., Christendat, D., deTitta, G., Hunt, J.F.

(2002) Structure 10: 1475-1487

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	Precorrin-6y methyltransferase/putative decarboxylase (protein)
Unique Ligands	SAH

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1OX4 \| pdb_00001ox4	Download File View File

TOWARDS UNDERSTANDING THE MECHANISM OF THE COMPLEX CYCLIZATION REACTION CATALYZED BY IMIDAZOLE GLYCEROPHOSPHATE SYNTHASE

Chaudhuri, B.N., Smith, J.L.

(2003) Biochemistry 42: 7003-7012

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Imidazole glycerol phosphate synthase hisHF (protein)
Unique Ligands	NI, POP, SO4

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1OX5 \| pdb_00001ox5	Download File View File

TOWARDS UNDERSTANDING THE MECHANISM OF THE COMPLEX CYCLIZATION REACTION CATALYZED BY IMIDAZOLE GLYCEROPHOSPHATE SYNTHASE

Chaudhuri, B.N., Smith, J.L.

(2003) Biochemistry 42: 7003-7012

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Imidazole glycerol phosphate synthase hisHF (protein)
Unique Ligands	1PR, NI

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1OX6 \| pdb_00001ox6	Download File View File

TOWARDS UNDERSTANDING THE MECHANISM OF THE COMPLEX CYCLIZATION REACTION CATALYZED BY IMIDAZOLE GLYCEROPHOSPHATE SYNTHASE

Chaudhuri, B.N., Smith, J.L.

(2003) Biochemistry 42: 7003-7012

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Imidazole glycerol phosphate synthase hisHF (protein)
Unique Ligands	NI, POP, SO4

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1TT9 \| pdb_00001tt9	Download File View File

Structure of the bifunctional and Golgi associated formiminotransferase cyclodeaminase octamer

Mao, Y., Vyas, N.K., Vyas, M.N., Chen, D.H., Ludtke, S.J., Chiu, W., Quiocho, F.A.

(2004) EMBO J 23: 2963-2971

Released	2005-06-28
Method	X-RAY DIFFRACTION 3.42 Å
Organisms	Rattus norvegicus
Macromolecule	Formimidoyltransferase-cyclodeaminase (Formiminotransferase- cyclodeaminase) (FTCD) (58 kDa microtubule-binding protein) (protein)

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2PFD \| pdb_00002pfd	Download File View File

Anisotropically refined structure of FTCD

Poon, B.K., Chen, X., Lu, M., Quiocho, F.A., Wang, Q., Ma, J.

To be published

Released	2007-04-24
Method	X-RAY DIFFRACTION 3.42 Å
Organisms	Rattus norvegicus
Macromolecule	Formimidoyltransferase-cyclodeaminase (protein)

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2REE \| pdb_00002ree	Download File View File

Crystal structure of the loading GNATL domain of CurA from Lyngbya majuscula

Geders, T.W., Smith, J.L.

(2007) Science 318: 970-974

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Moorena producens 19L
Macromolecule	CurA (protein)
Unique Ligands	CL, GOL, SO4

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2REF \| pdb_00002ref	Download File View File

Crystal structure of the loading GNATL domain of CurA from Lyngbya majuscula soaked with malonyl-CoA

Geders, T.W., Smith, J.L.

(2007) Science 318: 970-974

Released	2007-11-20
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Moorena producens 19L
Macromolecule	CurA (protein)
Unique Ligands	ACO

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3E2F \| pdb_00003e2f	Download File View File

Crystal structure of mouse kynurenine aminotransferase III, PLP-bound form

Han, Q., Robinson, R., Cai, T., Tagle, D.A., Li, J.

(2018) Mol Cell Biol 38:

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Mus musculus
Macromolecule	Kynurenine-oxoglutarate transaminase 3 (protein)
Unique Ligands	GOL

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3E2Y \| pdb_00003e2y	Download File View File

Crystal structure of mouse kynurenine aminotransferase III in complex with glutamine

Han, Q., Robinson, R., Cai, T., Tagle, D.A., Li, J.

(2018) Mol Cell Biol 38:

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Mus musculus
Macromolecule	Kynurenine-oxoglutarate transaminase 3 (protein)
Unique Ligands	GLN, GOL, PMP

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3E2Z \| pdb_00003e2z	Download File View File

Crystal structure of mouse kynurenine aminotransferase III in complex with kynurenine

Han, Q., Robinson, R., Cai, T., Tagle, D.A., Li, J.

(2018) Mol Cell Biol 38:

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Mus musculus
Macromolecule	Kynurenine-oxoglutarate transaminase 3 (protein)
Unique Ligands	GOL, KYN, PMP

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3FVX \| pdb_00003fvx	Download File View File

Human kynurenine aminotransferase I in complex with tris

Han, Q., Robinson, H., Cai, T., Tagle, D.A., Li, J.

(2009) J Med Chem 52: 2786-2793

Released	2009-05-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Kynurenine--oxoglutarate transaminase 1 (protein)
Unique Ligands	NA, TRS

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3QW3 \| pdb_00003qw3	Download File View File

Structure of Leishmania donovani OMP decarboxylase

French, J.B., Ealick, S.E.

(2011) J Biological Chem 286: 20930-20941

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Leishmania infantum
Macromolecule	Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (Ompdcase-oprtase, putative) (protein)
Unique Ligands	SO4

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3QW4 \| pdb_00003qw4	Download File View File

Structure of Leishmania donovani UMP synthase

French, J.B., Ealick, S.E.

(2011) J Biological Chem 286: 20930-20941

Released	2011-04-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Leishmania donovani
Macromolecule	UMP synthase (protein)
Unique Ligands	CL, U5P

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3UXO \| pdb_00003uxo	Download File View File

Crystal Structure of Rat DNA Polymerase Beta Mutator I260Q Apoenzyme

Gridley, C.L., Jaeger, J.

(2013) Biochemistry 52: 4422-4432

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rattus norvegicus
Macromolecule	DNA polymerase beta (protein)

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3V7I \| pdb_00003v7i	Download File View File

Germicidin synthase (Gcs) from Streptomyces coelicolor, a type III polyketide synthase

Akey, D.L., Smith, J.L., Geders, T.W.

(2012) J Am Chem Soc 134: 7359-7366

Released	2012-04-18
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Streptomyces coelicolor
Macromolecule	Putative polyketide synthase (protein)

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4HZO \| pdb_00004hzo	Download File View File

The Structure of the Bifunctional Acetyltransferase/Decarboxylase LnmK from the Leinamycin Biosynthetic Pathway Revealing Novel Activity for a Double Hot Dog Fold

Lohman, J.R., Bingman, C.A., Phillips Jr., G.N., Shen, B., Enzyme Discovery for Natural Product Biosynthesis (NatPro)

(2013) Biochemistry 52: 902-911

Released	2013-01-30
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Streptomyces atroolivaceus
Macromolecule	Bifunctional methylmalonyl-CoA:ACP acyltransferase/decarboxylase (protein)
Unique Ligands	CL, COA

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4HZP \| pdb_00004hzp	Download File View File

The Structure of the Bifunctional Acetyltransferase/Decarboxylase LnmK from the Leinamycin Biosynthetic Pathway Revealing Novel Activity for a Double Hot Dog Fold

Lohman, J.R., Bingman, C.A., Phillips Jr., G.N., Shen, B., Enzyme Discovery for Natural Product Biosynthesis (NatPro)

(2013) Biochemistry 52: 902-911

Released	2013-01-30
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Streptomyces atroolivaceus
Macromolecule	Bifunctional methylmalonyl-CoA:ACP Acyltransferase/Decarboxylase (protein)
Unique Ligands	CL, COA, SO4

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5DB5 \| pdb_00005db5	Download File View File

Crystal structure of PLP-bound E. coli SufS (cysteine persulfide intermediate) in space group P21

Arbing, M.A., Shin, A., Koo, C.W., Medrano-Soto, A., Eisenberg, D.

To be published

Released	2016-08-24
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Escherichia coli DH5[alpha]
Macromolecule	Cysteine desulfurase (protein)
Unique Ligands	CIT, CYS, EDO, PLP