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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "TRANSPORT PROTEIN, SIGNALING PROTEIN"

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Homo sapiens (11)
	Escherichia coli (2)
	Rattus norvegicus (2)
	Escherichia coli K-12 (1)
	Monosiga brevicollis (1)
	Saccharomyces cerevisiae S288C (1)

Taxonomy

	Eukaryota (12)
	Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (12)
	ELECTRON MICROSCOPY (1)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (14)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (3)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (5)
	2015 - 2019 (4)
	2020 - 2024 (1)

Enzyme Classification Name

Hydrolases (1)

Membrane Protein Annotation

	PDBTM (3)
	mpstruc (3)
	MemProtMD (2)
	OPM (2)

Symmetry Type

	Asymmetric (8)
	Cyclic (8)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (3)
	Artifacts (2)
	Membrane and cell surface proteins and peptides (2)
	Small proteins (1)
	All alpha proteins (1)
	All beta proteins (1)

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1 to 14 of 14 Structures

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2DH2 \| pdb_00002dh2	Download File View File

Crystal Structure of human ED-4F2hc

Fort, J., Fita, I., Palacin, M.

(2007) J Biological Chem 282: 31444-31452

Released	2007-03-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	4F2 cell-surface antigen heavy chain (protein)
Unique Ligands	ACT

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2DH3 \| pdb_00002dh3	Download File View File

Crystal Structure of human ED-4F2hc

Fort, J., Fita, I., Palacin, M.

(2007) J Biological Chem 282: 31444-31452

Released	2007-03-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	4F2 cell-surface antigen heavy chain (protein)
Unique Ligands	ZN

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2MRO \| pdb_00002mro	Download File View File

Structure of the complex of ubiquitin and the UBA domain from DNA-damage-inducible 1 protein (Ddi1)

Zhang, D., Fushman, D.

(2015) Structure 23: 542-557

Released	2015-02-04
Method	SOLUTION NMR
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	DNA damage-inducible protein 1 (protein) Polyubiquitin-B (protein)

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2NS1 \| pdb_00002ns1	Download File View File

Crystal structure of the e. coli ammonia channel AMTB complexed with the signal transduction protein GLNK

Gruswitz, F., O'Connell III, J., Stroud, R.M., Center for Structures of Membrane Proteins (CSMP)

(2007) Proc Natl Acad Sci U S A 104: 42-47

Released	2006-12-26
Method	X-RAY DIFFRACTION 1.962 Å
Organisms	Escherichia coli K-12
Macromolecule	Ammonia channel (protein) Nitrogen regulatory protein P-II 2 (protein)
Unique Ligands	ADP, BOG, TRS

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2NUU \| pdb_00002nuu	Download File View File

Regulating the Escherichia coli ammonia channel: the crystal structure of the AmtB-GlnK complex

Conroy, M.J., Durand, A., Lupo, D., Li, X.-D., Bullough, P.A., Winkler, F.K., Merrick, M.

(2007) Proc Natl Acad Sci U S A 104: 1213-1218

Released	2006-11-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Ammonia channel (protein) Nitrogen regulatory protein P-II 2 (protein)
Unique Ligands	ADP

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3O3U \| pdb_00003o3u	Download File View File

Crystal Structure of Human Receptor for Advanced Glycation Endproducts (RAGE)

Park, H., Boyington, J.C.

(2010) J Biological Chem 285: 40762-40770

Released	2010-10-13
Method	X-RAY DIFFRACTION 1.497 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Maltose-binding periplasmic protein, Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GLC

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3TMH \| pdb_00003tmh	Download File View File

Crystal structure of dual-specific A-kinase anchoring protein 2 in complex with cAMP-dependent protein kinase A type II alpha and PDZK1

Sarma, G.N., Phan, R.H., Sankaran, B., Taylor, S.S.

To be published

Released	2012-09-05
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	A-kinase anchor protein 10, mitochondrial (protein) Na(+)/H(+) exchange regulatory cofactor NHE-RF3 (protein) cAMP-dependent protein kinase type II-alpha regulatory subunit (protein)

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4DCK \| pdb_00004dck	Download File View File

Crystal structure of the C-terminus of voltage-gated sodium channel in complex with FGF13 and CaM

Chung, B.C., Wang, C., Yan, H., Pitt, G.S., Lee, S.Y.

(2012) Structure 20: 1167-1176

Released	2012-06-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Calmodulin (protein) Fibroblast growth factor 13 (protein) Sodium channel protein type 5 subunit alpha (protein)
Unique Ligands	MG

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4QAE \| pdb_00004qae	Download File View File

Crystal structure of an engineered lipocalin (Anticalin) in complex with human hepcidin

Giese, T., Skerra, A.

To be published

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Hepcidin (protein) Neutrophil gelatinase-associated lipocalin (protein)
Unique Ligands	CL, MPD

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4QAF \| pdb_00004qaf	Download File View File

Crystal structure of an engineered lipocalin (Anticalin) in complex with VEGF(8-109)

Giese, T., Skerra, A.

To be published

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Lipocalin-1 (protein) Vascular endothelial growth factor A (protein)
Unique Ligands	ACT, OMA, SO4

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6OKD \| pdb_00006okd	Download File View File

Crystal Structure of human transferrin receptor in complex with a cystine-dense peptide

Finton, K.A.K., Rupert, P.B., Strong, R.K.

(2020) J Mol Biology 432: 3989-4009

Released	2020-04-15
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens Monosiga brevicollis
Macromolecule	Transferrin receptor protein 1 (protein) transferrin receptor binding cystine-dense peptide (protein)
Unique Ligands	GOL, MES, NAG

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4OI7 \| pdb_00004oi7	Download File View File

RAGE recognizes nucleic acids and promotes inflammatory responses to DNA

Jin, T., Jiang, J., Xiao, T.

(2013) J Exp Medicine 210: 2447-2463

Released	2014-04-30
Method	X-RAY DIFFRACTION 3.104 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein) 5'-D(CPAPCPGPTPTPCPGPTPAPGPCPAPTPCPGPTPTPGPCPAPG)-3' (nucleic acid) 5'-D(CPTPGPCPAPAPCPGPAPTPGPCPTPAPCPGPAPAPCPGPTPG)-3' (nucleic acid)
Unique Ligands	EDO

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4OI8 \| pdb_00004oi8	Download File View File

RAGE is a nucleic acid receptor that promotes inflammatory responses to DNA.

Jin, T., Jiang, J., Xiao, T.

(2013) J Exp Medicine 210: 2447-2463

Released	2014-04-30
Method	X-RAY DIFFRACTION 3.101 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein) 5'-D(CPCPAPTPGPAPCPTPGPTPAPGPGPAPAPAPCPTPCPTPAPGPA)-3' (nucleic acid) 5'-D(CPTPCPTPAPGPAPGPTPTPTPCPCPTPAPCPAPGPTPCPAPTPG)-3' (nucleic acid)

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5KK2 \| pdb_00005kk2	Download File View File

Architecture of fully occupied GluA2 AMPA receptor - TARP complex elucidated by single particle cryo-electron microscopy

Zhao, Y., Chen, S., Yoshioka, C., Baconguis, I., Gouaux, E.

(2016) Nature 536: 108-111

Released	2016-07-06
Method	ELECTRON MICROSCOPY 7.3 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2DH2 | pdb_00002dh2

Crystal Structure of human ED-4F2hc

2DH3 | pdb_00002dh3

Crystal Structure of human ED-4F2hc

2MRO | pdb_00002mro

Structure of the complex of ubiquitin and the UBA domain from DNA-damage-inducible 1 protein (Ddi1)

2NS1 | pdb_00002ns1

Crystal structure of the e. coli ammonia channel AMTB complexed with the signal transduction protein GLNK

2NUU | pdb_00002nuu

Regulating the Escherichia coli ammonia channel: the crystal structure of the AmtB-GlnK complex

3O3U | pdb_00003o3u

Crystal Structure of Human Receptor for Advanced Glycation Endproducts (RAGE)

3TMH | pdb_00003tmh

Crystal structure of dual-specific A-kinase anchoring protein 2 in complex with cAMP-dependent protein kinase A type II alpha and PDZK1

4DCK | pdb_00004dck

Crystal structure of the C-terminus of voltage-gated sodium channel in complex with FGF13 and CaM

4QAE | pdb_00004qae

Crystal structure of an engineered lipocalin (Anticalin) in complex with human hepcidin

4QAF | pdb_00004qaf

Crystal structure of an engineered lipocalin (Anticalin) in complex with VEGF(8-109)

6OKD | pdb_00006okd

Crystal Structure of human transferrin receptor in complex with a cystine-dense peptide

4OI7 | pdb_00004oi7

RAGE recognizes nucleic acids and promotes inflammatory responses to DNA

4OI8 | pdb_00004oi8

RAGE is a nucleic acid receptor that promotes inflammatory responses to DNA.

5KK2 | pdb_00005kk2

Architecture of fully occupied GluA2 AMPA receptor - TARP complex elucidated by single particle cryo-electron microscopy

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2DH2 | pdb_00002dh2

2DH3 | pdb_00002dh3

2MRO | pdb_00002mro

2NS1 | pdb_00002ns1

2NUU | pdb_00002nuu

3O3U | pdb_00003o3u

3TMH | pdb_00003tmh

4DCK | pdb_00004dck

4QAE | pdb_00004qae

4QAF | pdb_00004qaf

6OKD | pdb_00006okd

4OI7 | pdb_00004oi7

4OI8 | pdb_00004oi8

5KK2 | pdb_00005kk2