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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "Transcription/DNA"

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Search Summary

This query matches 994 Structures.

Refinements

Structure Determination Methodology

experimental (994)

Scientific Name of Source Organism

	Homo sapiens (360)
	synthetic construct (241)
	Mus musculus (128)
	Escherichia coli (117)
	Escherichia coli K-12 (70)
	Saccharomyces cerevisiae (36)
	Bacillus subtilis (26)
	Rattus norvegicus (25)
	Drosophila melanogaster (24)
	Arabidopsis thaliana (23)

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Taxonomy

	Eukaryota (621)
	Bacteria (348)
	other sequences (241)
	Duplodnaviria (40)
	Archaea (8)
	Eukaryota (eukaryotes) (7)
	Monodnaviria (4)
	unclassified sequences (3)
	Riboviria (2)

Experimental Method

	X-RAY DIFFRACTION (794)
	ELECTRON MICROSCOPY (146)
	SOLUTION NMR (54)

Polymer Entity Type

	Protein (994)
	DNA (976)
	RNA (119)
	NA-hybrid (1)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (23)
	1.5 - 2.0 (124)
	2.0 - 2.5 (221)
	2.5 - 3.0 (264)
	3.0 - 3.5 (162)
	3.5 - 4.0 (74)
	4.0 - 4.5 (42)
	> 4.5 (28)

Release Date

	1990 - 1994 (23)
	1995 - 1999 (96)
	2000 - 2004 (126)
	2005 - 2009 (112)
	2010 - 2014 (166)
	2015 - 2019 (256)
	2020 - 2024 (214)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (246)
	Lyases (28)
	Hydrolases (20)
	Isomerases (3)

Symmetry Type

	Asymmetric (643)
	Cyclic (358)
	Dihedral (3)
	Helical (2)

SCOP Classification

	All alpha proteins (211)
	All beta proteins (66)
	Small proteins (78)
	Alpha and beta proteins (a+b) (54)
	Artifacts (61)
	Coiled coil proteins (26)
	Low resolution protein structures (7)
	Alpha and beta proteins (a/b) (32)
	Multi-domain proteins (alpha and beta) (7)
	Designed proteins (2)

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AllSelected

1 to 25 of 994 Structures

Page 1 of 40

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1A02 \| pdb_00001a02	Download File View File

STRUCTURE OF THE DNA BINDING DOMAINS OF NFAT, FOS AND JUN BOUND TO DNA

Chen, L., Glover, J.N.M., Hogan, P.G., Rao, A., Harrison, S.C.

(1998) Nature 392: 42-48

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	AP-1 FRAGMENT FOS (protein) AP-1 FRAGMENT JUN (protein) NUCLEAR FACTOR OF ACTIVATED T CELLS (protein) DNA (5'-D(DAPDAPDCPDTPDAPDTPDGPDAPDAPDAPDCPDAPDAPDAPDTPDTPDTPDTPDCPDC)-3') (nucleic acid) DNA (5'-D(DTPDTPDGPDGPDAPDAPDAPDAPDTPDTPDTPDGPDTPDTPDTPDCPDAPDTPDAPDG)-3') (nucleic acid)

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1A0A \| pdb_00001a0a	Download File View File

PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4/DNA COMPLEX

Shimizu, T., Toumoto, A., Ihara, K., Shimizu, M., Kyogoku, Y., Ogawa, N., Oshima, Y., Hakoshima, T.

(1997) EMBO J 16: 4689-4697

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4) (protein) DNA (5'-D(CPTPAPGPTPCPCPCPAPCPGPTPGPTPGPAPG )-3') (nucleic acid) DNA (5'-D(CPTPCPAPCPAPCPGPTPGPGPGPAPCPTPAPG )-3') (nucleic acid)

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1A1F \| pdb_00001a1f	Download File View File

DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	THREE-FINGER ZIF268 PEPTIDE (protein) DNA (5'-D(APGPCPGPTPGPGPGPAPCPC)-3') (nucleic acid) DNA (5'-D(TPGPGPTPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1G \| pdb_00001a1g	Download File View File

DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	DSNR ZINC FINGER PEPTIDE (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPGPT)-3') (nucleic acid) DNA (5'-D(TPAPCPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1H \| pdb_00001a1h	Download File View File

QGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	QGSR ZINC FINGER PEPTIDE (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPAPC)-3') (nucleic acid) DNA (5'-D(TPGPTPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1I \| pdb_00001a1i	Download File View File

RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	RADR ZIF268 ZINC FINGER PEPTIDE (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPAPC)-3') (nucleic acid) DNA (5'-D(TPGPTPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1J \| pdb_00001a1j	Download File View File

RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (RADR ZIF268 ZINC FINGER PEPTIDE) (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPGPT)-3') (nucleic acid) DNA (5'-D(TPAPCPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1K \| pdb_00001a1k	Download File View File

RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	RADR ZIF268 VARIANT (protein) DNA (5'-D(APGPCPGPTPGPGPGPAPCPC)-3') (nucleic acid) DNA (5'-D(TPGPGPTPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1L \| pdb_00001a1l	Download File View File

ZIF268 ZINC FINGER-DNA COMPLEX (GCAC SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (ZIF268 ZINC FINGER PEPTIDE) (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPAPC)-3') (nucleic acid) DNA (5'-D(TPGPTPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A3Q \| pdb_00001a3q	Download File View File

HUMAN NF-KAPPA-B P52 BOUND TO DNA

Cramer, P., Larson, C.J., Verdine, G.L., Muller, C.W.

(1997) EMBO J 16: 7078-7090

Released	1998-06-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (NUCLEAR FACTOR KAPPA-B P52) (protein) DNA (5'-D(GPGPGPGPAPAPTPCPCPCPC)-3') (nucleic acid) DNA (5'-D(GPGPGPGPAPTPTPCPCPCPC)-3') (nucleic acid)

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1A66 \| pdb_00001a66	Download File View File

SOLUTION NMR STRUCTURE OF THE CORE NFATC1/DNA COMPLEX, 18 STRUCTURES

Zhou, P., Sun, L.J., Doetsch, V., Wagner, G., Verdine, G.L.

(1998) Cell 92: 687-696

Released	1998-06-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CORE NFATC1 (protein) DNA (5'-D(CPAPAPTPTPTPTPCPCPTPCPG)-3') (nucleic acid) DNA (5'-D(CPGPAPGPGPAPAPAPAPTPTPG)-3') (nucleic acid)

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1A6Y \| pdb_00001a6y	Download File View File

REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX

Zhao, Q., Khorasanizadeh, S., Rastinejad, F.

(1998) Mol Cell 1: 849-861

Released	1998-10-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	ORPHAN NUCLEAR RECEPTOR NR1D1 (protein) DNA (5'-D(CPAPAPCPTPAPGPGPTPCPAPCP(5IT)PAPGPGPTPCPAPG)-3') (nucleic acid) DNA (5'-D(CPTPGPAPCPCPTPAPGPTPGPAPCPCPTPAPGPTPTPG)-3') (nucleic acid)
Unique Ligands	ZN

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1AAY \| pdb_00001aay	Download File View File

ZIF268 ZINC FINGER-DNA COMPLEX

Elrod-Erickson, M., Rould, M.A., Pabo, C.O.

(1996) Structure 4: 1171-1180

Released	1997-04-21
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (ZIF268 ZINC FINGER PEPTIDE) (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPGPT)-3') (nucleic acid) DNA (5'-D(TPAPCPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1AIS \| pdb_00001ais	Download File View File

TATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/TATA-BOX COMPLEX FROM PYROCOCCUS WOESEI

Kosa, P.F., Ghosh, G., Dedecker, B.S., Sigler, P.B.

(1997) Proc Natl Acad Sci U S A 94: 6042-6047

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus woesei
Macromolecule	PROTEIN (TATA-BINDING PROTEIN) (protein) PROTEIN (TRANSCRIPTION INITIATION FACTOR IIB) (protein) DNA (5'-D(APAPCPTPTPAPCPTPTPTP(5IU)P(5IU)PAPAPAPGPC)-3') (nucleic acid) DNA (5'-D(GPCPTPTPTPAPAPAPAPAPGPTPAPAPGPTPT )-3') (nucleic acid)

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1AM9 \| pdb_00001am9	Download File View File

HUMAN SREBP-1A BOUND TO LDL RECEPTOR PROMOTER

Parraga, A., Burley, S.K.

(1998) Structure 6: 661-672

Released	1998-07-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (STEROL REGULATORY ELEMENT BINDING PROTEIN 1A) (protein) DNA (5'-D(CPAPTPGPAPGPAPTPCPAPCPCPCPCPAPCPT PGPCPAPA)-3') (nucleic acid) DNA (5'-D(TPTPGPCPAPGPTPGPGPGPGPTPGPAPTPCPT )-3') (nucleic acid)
Unique Ligands	MG

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1AN2 \| pdb_00001an2	Download File View File

RECOGNITION BY MAX OF ITS COGNATE DNA THROUGH A DIMERIC B/HLH/Z DOMAIN

Ferre-D'Amare, A.R., Prendergast, G.C., Ziff, E.B., Burley, S.K.

(1993) Nature 363: 38-45

Released	1997-09-17
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	PROTEIN (TRANSCRIPTION FACTOR MAX (TF MAX)) (protein) DNA (5'-D(GPTPGPTPAPGPGPTPCPAPCPGPTPGPAPCPC PTPAPCPAPC)- 3') (nucleic acid)

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1AN4 \| pdb_00001an4	Download File View File

STRUCTURE AND FUNCTION OF THE B/HLH/Z DOMAIN OF USF

Ferre-D'Amare, A.R., Pognonec, P., Roeder, R.G., Burley, S.K.

(1994) EMBO J 13: 180-189

Released	1997-09-17
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (UPSTREAM STIMULATORY FACTOR) (protein) DNA (5'-D(CPAPCPCPCPGPGPTPCPAPCPGPTPGPGPCPC PTPAPCPA)-3') (nucleic acid) DNA (5'-D(GPTPGPTPAPGPGPCPCPAPCPGPTPGPAPCPC PGPGPGPT)-3') (nucleic acid)

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1AU7 \| pdb_00001au7	Download File View File

PIT-1 MUTANT/DNA COMPLEX

Jacobson, E.M., Li, P., Leon-Del-Rio, A., Rosenfeld, M.G., Aggarwal, A.K.

(1997) Genes Dev 11: 198-212

Released	1998-01-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	PROTEIN PIT-1 (protein) CONSENSUS DNA 25-MER (nucleic acid) DNA (5'-D(CPTPTPCPCPTPCPAPTPGPTPAPTPAPTPAPC PAPTPGPAPGP* GP*A)-3') (nucleic acid)

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1AWC \| pdb_00001awc	Download File View File

MOUSE GABP ALPHA/BETA DOMAIN BOUND TO DNA

Batchelor, A.H., Wolberger, C.

(1998) Science 279: 1037-1041

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (GA BINDING PROTEIN ALPHA) (protein) PROTEIN (GA BINDING PROTEIN BETA 1) (protein) DNA (5'-D(APAP(BRU)PGPAPCPCPGPGPAPAPGPTPAP(CBR)PAPCP(CBR)PGPGPA)-3') (nucleic acid) DNA (5'-D(TPTPCPCPGPGP(BRU)PGP(BRU)PAPCPTPTPCPCPGPGPTPCPAPT)-3') (nucleic acid)

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1B8I \| pdb_00001b8i	Download File View File

STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX

Passner, J.M., Ryoo, H.-D., Shen, L., Mann, R.S., Aggarwal, A.K.

(1999) Nature 397: 714-719

Released	1999-04-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Drosophila melanogaster
Macromolecule	PROTEIN (HOMEOBOX PROTEIN EXTRADENTICLE) (protein) PROTEIN (ULTRABITHORAX HOMEOTIC PROTEIN IV) (protein) DNA (5'-D(APCPGPTPGPAPTPTPTPAPTPGPGPCPG)-3') (nucleic acid) DNA (5'-D(GPTPCPGPCPCPAPTPAPAPAPTPCPAPC)-3') (nucleic acid)

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1BC7 \| pdb_00001bc7	Download File View File

SERUM RESPONSE FACTOR ACCESSORY PROTEIN 1A (SAP-1)/DNA COMPLEX

Mo, Y., Vaessen, B., Johnston, K., Marmorstein, R.

(1998) Mol Cell 2: 201-212

Released	1999-01-21
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (ETS-DOMAIN PROTEIN) (protein) DNA (5'-D(CPAPCPAPTPCPCPTPGPTPC)-3') (nucleic acid) DNA (5'-D(GPAPCPAPGPGPAPTPGPTPG)-3') (nucleic acid)

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1BC8 \| pdb_00001bc8	Download File View File

STRUCTURES OF SAP-1 BOUND TO DNA SEQUENCES FROM THE E74 AND C-FOS PROMOTERS PROVIDE INSIGHTS INTO HOW ETS PROTEINS DISCRIMINATE BETWEEN RELATED DNA TARGETS

Mo, Y., Vaessen, B., Johnston, K., Marmorstein, R.

(1998) Mol Cell 2: 201-212

Released	1998-12-01
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (SAP-1 ETS DOMAIN) (protein) DNA (5'-D(APAPCPTPTPCPCPGPGPT)-3') (nucleic acid) DNA (5'-D(TPAPCPCPGPGPAPAPGPT)-3') (nucleic acid)
Unique Ligands	ZN

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1BDH \| pdb_00001bdh	Download File View File

PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX

Glasfeld, A., Schumacher, M.A., Choi, K.Y., Zalkin, H., Brennan, R.G.

(1996) J Am Chem Soc 118: 13073-13074

Released	1997-04-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (PURINE REPRESSOR) (protein) DNA (5'-D(TPAPCPGPCPAPAPAPCPGPTPTPTPGPCPGP*T )-3') (nucleic acid)
Unique Ligands	HPA

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1BDI \| pdb_00001bdi	Download File View File

PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX

Glasfeld, A., Schumacher, M.A., Choi, K.Y., Zalkin, H., Brennan, R.G.

(1996) J Am Chem Soc 118: 13073-13074

Released	1997-04-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (PURINE REPRESSOR) (protein) DNA (5'-D(TPAPCPGPCPAPAPAPCPGPTPTPTPGPCPGP*T )-3') (nucleic acid)
Unique Ligands	HPA

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1BG1 \| pdb_00001bg1	Download File View File

TRANSCRIPTION FACTOR STAT3B/DNA COMPLEX

Becker, S., Groner, B., Muller, C.W.

(1998) Nature 394: 145-151

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (TRANSCRIPTION FACTOR STAT3B) (protein) DNA (5'-D(TPGPCPAPTPTPTPCPCPCPGPTPAPAPAPTPCPT)-3') (nucleic acid)

1 to 25 of 994 Structures

Page 1 of 40

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A02 | pdb_00001a02

1A0A | pdb_00001a0a

1A1F | pdb_00001a1f

1A1G | pdb_00001a1g

1A1H | pdb_00001a1h

1A1I | pdb_00001a1i

1A1J | pdb_00001a1j

1A1K | pdb_00001a1k

1A1L | pdb_00001a1l

1A3Q | pdb_00001a3q

1A66 | pdb_00001a66

1A6Y | pdb_00001a6y

1AAY | pdb_00001aay

1AIS | pdb_00001ais

1AM9 | pdb_00001am9

1AN2 | pdb_00001an2

1AN4 | pdb_00001an4

1AU7 | pdb_00001au7

1AWC | pdb_00001awc

1B8I | pdb_00001b8i

1BC7 | pdb_00001bc7

1BC8 | pdb_00001bc8

1BDH | pdb_00001bdh

1BDI | pdb_00001bdi

1BG1 | pdb_00001bg1